HEADER TRANSFERASE 12-JUL-99 1QE1 TITLE CRYSTAL STRUCTURE OF 3TC-RESISTANT M184I MUTANT OF HIV-1 TITLE 2 REVERSE TRANSCRIPTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: REVERSE TRANSCRIPTASE, SUBUNIT P66; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SUBUNIT A (P66), RESIDUES 168-725; COMPND 5 SYNONYM: RT; COMPND 6 EC: 2.7.7.49; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: REVERSE TRANSCRIPTASE, SUBUNIT P51; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: SUBUNIT B (P51), RESIDUES 168-594; COMPND 13 SYNONYM: RT; COMPND 14 EC: 2.7.7.49; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 SOURCE 3 BH10; SOURCE 4 ORGANISM_TAXID: 11678; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 SOURCE 9 BH10; SOURCE 10 ORGANISM_TAXID: 11678; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HIV, REVERSE TRANSCRIPTASE, 3TC, RESISTANCE, MUTANT, DNA KEYWDS 2 POLYMERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.G.SARAFIANOS,K.DAS,J.DING,S.H.HUGHES,E.ARNOLD REVDAT 4 24-FEB-09 1QE1 1 VERSN REVDAT 3 01-APR-03 1QE1 1 JRNL REVDAT 2 20-MAR-00 1QE1 1 SEQRES SEQADV REVDAT 1 30-AUG-99 1QE1 0 JRNL AUTH S.G.SARAFIANOS,K.DAS,A.D.CLARK JR.,J.DING, JRNL AUTH 2 P.L.BOYER,S.H.HUGHES,E.ARNOLD JRNL TITL LAMIVUDINE (3TC) RESISTANCE IN HIV-1 REVERSE JRNL TITL 2 TRANSCRIPTASE INVOLVES STERIC HINDRANCE WITH JRNL TITL 3 BETA-BRANCHED AMINO ACIDS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 96 10027 1999 JRNL REFN ISSN 0027-8424 JRNL PMID 10468556 JRNL DOI 10.1073/PNAS.96.18.10027 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.HSIOU,J.DING,K.DAS,A.D.CLARK JR.,S.H.HUGHES, REMARK 1 AUTH 2 E.ARNOLD REMARK 1 TITL STRUCTURE OF UNLIGANDED HIV-1 REVERSE REMARK 1 TITL 2 TRANSCRIPTASE AT 2.7 A RESOLUTION: IMPLICATIONS OF REMARK 1 TITL 3 CONFORMATIONAL CHANGES FOR POLYMERIZATION AND REMARK 1 TITL 4 INHIBITION MECHANISMS REMARK 1 REF STRUCTURE V. 4 853 1996 REMARK 1 REFN ISSN 0969-2126 REMARK 1 DOI 10.1016/S0969-2126(96)00091-3 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.DING,K.DAS,Y.HSIOU,S.G.SARAFIANOS,A.D.CLARK JR., REMARK 1 AUTH 2 A.JACOBO-MOLINA,C.TANTILLO,S.H.HUGHES,E.ARNOLD REMARK 1 TITL STRUCTURE AND FUNCTIONAL IMPLICATIONS OF THE REMARK 1 TITL 2 POLYMERASE ACTIVE SITE REGION IN A COMPLEX OF REMARK 1 TITL 3 HIV-1 RT WITH A DOUBLE-STRANDED DNA AND AN REMARK 1 TITL 4 ANTIBODY FAB FRAGMENT AT 2.8 ANGSTROMS RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 284 1095 1998 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1998.2208 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.843 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 31250 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.259 REMARK 3 FREE R VALUE : 0.346 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1426 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7699 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1QE1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-99. REMARK 100 THE RCSB ID CODE IS RCSB009329. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 108 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.928 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : PRINCETON 2K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35177 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, GLYCEROL, BIS-TRIS, REMARK 280 AMMONIUM SULFATE, PH 6.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 119.30000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.35000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 119.30000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.35000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: HETERODIMER, OF TWO SUBUNITS, P66 AND P51. P51 CONTAINS REMARK 300 THE N-TERMINAL 440 RESIDUES OF THE P66 SUBUNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 557 REMARK 465 LYS A 558 REMARK 465 LYS B 219 REMARK 465 LYS B 220 REMARK 465 HIS B 221 REMARK 465 GLN B 222 REMARK 465 LYS B 223 REMARK 465 GLU B 224 REMARK 465 PRO B 225 REMARK 465 PRO B 226 REMARK 465 PHE B 227 REMARK 465 LEU B 228 REMARK 465 TRP B 229 REMARK 465 MET B 230 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 GLU A 28 CG CD OE1 OE2 REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 LYS A 66 CG CD CE NZ REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 TRP A 71 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 71 CZ3 CH2 REMARK 470 SER A 134 OG REMARK 470 ILE A 135 CG1 CG2 CD1 REMARK 470 ASN A 136 CG OD1 ND2 REMARK 470 THR A 139 OG1 CG2 REMARK 470 GLU A 169 CG CD OE1 OE2 REMARK 470 ASP A 177 CG OD1 OD2 REMARK 470 ILE A 184 CG1 CG2 CD1 REMARK 470 GLU A 203 CG CD OE1 OE2 REMARK 470 LYS A 219 CG CD CE NZ REMARK 470 GLN A 242 CG CD OE1 NE2 REMARK 470 GLN A 278 CG CD OE1 NE2 REMARK 470 GLU A 291 CG CD OE1 OE2 REMARK 470 GLU A 297 CG CD OE1 OE2 REMARK 470 GLU A 305 CG CD OE1 OE2 REMARK 470 LYS A 311 CG CD CE NZ REMARK 470 GLU A 312 CG CD OE1 OE2 REMARK 470 GLN A 336 CG CD OE1 NE2 REMARK 470 ARG A 356 CG CD NE CZ NH1 NH2 REMARK 470 MET A 357 CG SD CE REMARK 470 ARG A 358 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 404 CG CD OE1 OE2 REMARK 470 GLU A 413 CG CD OE1 OE2 REMARK 470 LYS A 424 CG CD CE NZ REMARK 470 ARG A 448 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 451 CG CD CE NZ REMARK 470 LYS A 512 CG CD CE NZ REMARK 470 GLU A 514 CG CD OE1 OE2 REMARK 470 ASP A 549 CG OD1 OD2 REMARK 470 LYS A 550 CG CD CE NZ REMARK 470 ILE A 556 CG1 CG2 CD1 REMARK 470 GLU B 36 CG CD OE1 OE2 REMARK 470 ASP B 67 CG OD1 OD2 REMARK 470 THR B 69 OG1 CG2 REMARK 470 TRP B 88 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 88 CZ3 CH2 REMARK 470 GLU B 89 CG CD OE1 OE2 REMARK 470 LYS B 173 CG CD CE NZ REMARK 470 GLN B 197 CG CD OE1 NE2 REMARK 470 ASP B 218 CG OD1 OD2 REMARK 470 LYS B 238 CG CD CE NZ REMARK 470 LYS B 281 CG CD CE NZ REMARK 470 LEU B 295 CG CD1 CD2 REMARK 470 GLU B 297 CG CD OE1 OE2 REMARK 470 GLU B 305 CG CD OE1 OE2 REMARK 470 ASN B 306 CG OD1 ND2 REMARK 470 GLU B 308 CG CD OE1 OE2 REMARK 470 ARG B 356 CG CD NE CZ NH1 NH2 REMARK 470 MET B 357 CG SD CE REMARK 470 ARG B 358 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 361 CG ND1 CD2 CE1 NE2 REMARK 470 THR B 362 OG1 CG2 REMARK 470 GLN B 407 CG CD OE1 NE2 REMARK 470 LYS B 424 CG CD CE NZ REMARK 470 LEU B 425 CG CD1 CD2 REMARK 470 TYR B 427 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 4 40.40 -93.81 REMARK 500 LEU A 26 -146.98 -95.22 REMARK 500 ILE A 50 -166.65 -117.20 REMARK 500 PRO A 52 11.51 -62.93 REMARK 500 ARG A 78 -38.63 -36.82 REMARK 500 ASN A 81 -9.62 -57.18 REMARK 500 GLN A 85 157.09 -33.09 REMARK 500 LEU A 100 155.20 -47.45 REMARK 500 LYS A 104 -72.53 -11.15 REMARK 500 SER A 117 -70.80 -81.44 REMARK 500 PHE A 124 3.28 -56.46 REMARK 500 ASN A 137 11.88 -68.65 REMARK 500 TYR A 144 -166.25 -120.80 REMARK 500 SER A 156 -63.72 -19.98 REMARK 500 PRO A 176 7.26 -46.51 REMARK 500 ILE A 184 -124.96 47.76 REMARK 500 ASP A 185 53.13 -113.78 REMARK 500 ILE A 195 -56.71 -4.84 REMARK 500 LYS A 223 87.26 -15.40 REMARK 500 PRO A 225 -52.68 -15.22 REMARK 500 VAL A 276 -13.47 -141.54 REMARK 500 ALA A 288 104.31 53.66 REMARK 500 LEU A 310 6.73 -57.95 REMARK 500 GLN A 332 -116.70 -148.52 REMARK 500 GLN A 334 27.47 26.36 REMARK 500 GLN A 343 -52.23 -121.36 REMARK 500 PHE A 346 -10.31 76.56 REMARK 500 LYS A 366 4.31 -62.03 REMARK 500 THR A 369 -76.09 -39.13 REMARK 500 ILE A 393 122.18 -176.18 REMARK 500 PRO A 412 -172.27 -65.73 REMARK 500 PRO A 420 -100.21 -22.74 REMARK 500 PRO A 421 66.84 -51.72 REMARK 500 PHE A 440 96.29 -67.62 REMARK 500 ASP A 443 -176.37 -173.88 REMARK 500 ALA A 445 -161.83 -179.67 REMARK 500 ALA A 446 -162.04 -176.96 REMARK 500 ALA A 455 105.83 -176.19 REMARK 500 VAL A 458 63.33 -167.85 REMARK 500 THR A 459 173.40 -48.48 REMARK 500 LYS A 461 3.25 -68.71 REMARK 500 ARG A 463 166.45 -44.25 REMARK 500 LYS A 465 172.34 169.25 REMARK 500 ASN A 474 -16.98 -49.77 REMARK 500 LEU A 484 -71.58 -54.40 REMARK 500 ALA A 485 -26.30 -38.28 REMARK 500 LEU A 491 0.62 -62.66 REMARK 500 ILE A 495 158.31 -46.35 REMARK 500 LYS A 528 -171.42 -46.85 REMARK 500 GLU A 529 -37.33 -131.62 REMARK 500 TYR A 532 109.51 -166.57 REMARK 500 ILE A 542 -98.47 -78.24 REMARK 500 ALA A 554 -118.55 -58.51 REMARK 500 ILE B 2 123.76 -34.02 REMARK 500 VAL B 21 -177.35 -55.83 REMARK 500 GLU B 44 3.71 -52.97 REMARK 500 GLU B 53 3.59 -43.63 REMARK 500 ILE B 63 -143.80 -85.52 REMARK 500 LYS B 64 92.26 -175.58 REMARK 500 LYS B 65 -56.79 -24.95 REMARK 500 LYS B 66 -155.84 -142.49 REMARK 500 THR B 69 -129.37 -94.61 REMARK 500 GLN B 85 115.52 -35.94 REMARK 500 TRP B 88 -78.75 -13.15 REMARK 500 GLU B 89 -21.45 -153.76 REMARK 500 PRO B 95 97.55 -45.55 REMARK 500 HIS B 96 117.11 -29.73 REMARK 500 PRO B 97 83.56 -51.42 REMARK 500 ALA B 98 -31.03 -38.69 REMARK 500 ASP B 121 116.22 -38.50 REMARK 500 GLU B 122 -38.45 -39.78 REMARK 500 PRO B 140 33.22 -47.54 REMARK 500 TRP B 153 172.31 -25.43 REMARK 500 SER B 156 -81.08 -52.95 REMARK 500 PHE B 160 37.29 -69.94 REMARK 500 ILE B 184 -117.02 52.76 REMARK 500 ASP B 185 32.79 -85.12 REMARK 500 ASP B 192 44.12 -98.10 REMARK 500 THR B 200 -60.81 -94.16 REMARK 500 TRP B 212 19.18 -66.71 REMARK 500 PRO B 236 29.27 -68.17 REMARK 500 SER B 251 26.41 47.68 REMARK 500 TRP B 252 -113.67 -90.02 REMARK 500 ALA B 267 -8.51 -59.35 REMARK 500 ILE B 270 -85.10 -78.05 REMARK 500 ARG B 277 -76.94 -9.80 REMARK 500 GLN B 278 28.44 -65.06 REMARK 500 LEU B 279 -35.92 -144.59 REMARK 500 THR B 286 48.49 -168.75 REMARK 500 THR B 290 9.13 -60.66 REMARK 500 GLU B 297 7.69 -64.08 REMARK 500 VAL B 314 162.98 -49.95 REMARK 500 GLN B 332 46.43 -155.30 REMARK 500 PRO B 345 133.06 -37.61 REMARK 500 PHE B 346 -2.83 69.68 REMARK 500 LYS B 347 67.78 -103.30 REMARK 500 ARG B 356 64.30 -163.22 REMARK 500 ARG B 358 133.00 -172.68 REMARK 500 LYS B 385 149.61 -177.60 REMARK 500 PRO B 392 62.03 -68.18 REMARK 500 TRP B 401 -32.57 -148.20 REMARK 500 THR B 403 -14.95 -48.79 REMARK 500 PRO B 420 -140.15 -81.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 144 0.09 SIDE_CHAIN REMARK 500 TYR A 232 0.07 SIDE_CHAIN REMARK 500 PHE B 160 0.08 SIDE_CHAIN REMARK 500 TYR B 183 0.07 SIDE_CHAIN REMARK 500 TYR B 342 0.09 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1C9R RELATED DB: PDB REMARK 900 CONTAINS THE SAME PROTEIN IN COMPLEX WITH A DOUBLE STRANDED REMARK 900 DNA FRAGMENT AND A FAB MONOCLONAL ANTIBODY FRAGMENT REMARK 900 RELATED ID: 1DLO RELATED DB: PDB REMARK 900 STRUCTURE OF WILD-TYPE UNLIGANDED HIV-1 REVERSE REMARK 900 TRANSCRIPTASE REMARK 900 RELATED ID: 2HMI RELATED DB: PDB REMARK 900 STRUCTURE OF WILD-TYPE HIV-1 REVERSE TRANSCRIPTASE IN REMARK 900 COMPLEX WITH DNA AND A FAB MONOCLONAL ANTIBODY FRAGMENT DBREF 1QE1 A 1 558 UNP P03366 POL_HV1B1 168 725 DBREF 1QE1 B 1 427 UNP P03366 POL_HV1B1 168 594 SEQADV 1QE1 ILE A 184 UNP P03366 MET 351 ENGINEERED SEQADV 1QE1 SER A 280 UNP P03366 CYS 447 ENGINEERED SEQADV 1QE1 ILE B 184 UNP P03366 MET 351 ENGINEERED SEQADV 1QE1 SER B 280 UNP P03366 CYS 447 ENGINEERED SEQRES 1 A 558 PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU LYS SEQRES 2 A 558 PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO LEU SEQRES 3 A 558 THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS THR SEQRES 4 A 558 GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY PRO SEQRES 5 A 558 GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS LYS SEQRES 6 A 558 LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE ARG SEQRES 7 A 558 GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL GLN SEQRES 8 A 558 LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS LYS SEQRES 9 A 558 SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SER SEQRES 10 A 558 VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA PHE SEQRES 11 A 558 THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE ARG SEQRES 12 A 558 TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SER SEQRES 13 A 558 PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU GLU SEQRES 14 A 558 PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE TYR GLN SEQRES 15 A 558 TYR ILE ASP ASP LEU TYR VAL GLY SER ASP LEU GLU ILE SEQRES 16 A 558 GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN HIS SEQRES 17 A 558 LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS HIS SEQRES 18 A 558 GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU LEU SEQRES 19 A 558 HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU PRO SEQRES 20 A 558 GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN LYS LEU SEQRES 21 A 558 VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO GLY SEQRES 22 A 558 ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG GLY THR SEQRES 23 A 558 LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU ALA SEQRES 24 A 558 GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS GLU SEQRES 25 A 558 PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP LEU SEQRES 26 A 558 ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP THR SEQRES 27 A 558 TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS THR SEQRES 28 A 558 GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN ASP SEQRES 29 A 558 VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR THR SEQRES 30 A 558 GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE LYS SEQRES 31 A 558 LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP THR SEQRES 32 A 558 GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU PHE SEQRES 33 A 558 VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN LEU SEQRES 34 A 558 GLU LYS GLU PRO ILE VAL GLY ALA GLU THR PHE TYR VAL SEQRES 35 A 558 ASP GLY ALA ALA ASN ARG GLU THR LYS LEU GLY LYS ALA SEQRES 36 A 558 GLY TYR VAL THR ASN LYS GLY ARG GLN LYS VAL VAL PRO SEQRES 37 A 558 LEU THR ASN THR THR ASN GLN LYS THR GLU LEU GLN ALA SEQRES 38 A 558 ILE TYR LEU ALA LEU GLN ASP SER GLY LEU GLU VAL ASN SEQRES 39 A 558 ILE VAL THR ASP SER GLN TYR ALA LEU GLY ILE ILE GLN SEQRES 40 A 558 ALA GLN PRO ASP LYS SER GLU SER GLU LEU VAL ASN GLN SEQRES 41 A 558 ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS VAL TYR LEU SEQRES 42 A 558 ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY GLY ASN GLU SEQRES 43 A 558 GLN VAL ASP LYS LEU VAL SER ALA GLY ILE ARG LYS SEQRES 1 B 427 PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU LYS SEQRES 2 B 427 PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO LEU SEQRES 3 B 427 THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS THR SEQRES 4 B 427 GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY PRO SEQRES 5 B 427 GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS LYS SEQRES 6 B 427 LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE ARG SEQRES 7 B 427 GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL GLN SEQRES 8 B 427 LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS LYS SEQRES 9 B 427 SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SER SEQRES 10 B 427 VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA PHE SEQRES 11 B 427 THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE ARG SEQRES 12 B 427 TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SER SEQRES 13 B 427 PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU GLU SEQRES 14 B 427 PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE TYR GLN SEQRES 15 B 427 TYR ILE ASP ASP LEU TYR VAL GLY SER ASP LEU GLU ILE SEQRES 16 B 427 GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN HIS SEQRES 17 B 427 LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS HIS SEQRES 18 B 427 GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU LEU SEQRES 19 B 427 HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU PRO SEQRES 20 B 427 GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN LYS LEU SEQRES 21 B 427 VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO GLY SEQRES 22 B 427 ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG GLY THR SEQRES 23 B 427 LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU ALA SEQRES 24 B 427 GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS GLU SEQRES 25 B 427 PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP LEU SEQRES 26 B 427 ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP THR SEQRES 27 B 427 TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS THR SEQRES 28 B 427 GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN ASP SEQRES 29 B 427 VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR THR SEQRES 30 B 427 GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE LYS SEQRES 31 B 427 LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP THR SEQRES 32 B 427 GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU PHE SEQRES 33 B 427 VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR HELIX 1 1 THR A 27 GLU A 44 1 18 HELIX 2 2 GLU A 79 THR A 84 1 6 HELIX 3 3 HIS A 96 LEU A 100 5 5 HELIX 4 4 ASP A 113 VAL A 118 1 6 HELIX 5 5 ARG A 125 ALA A 129 5 5 HELIX 6 6 GLY A 155 ASN A 175 1 21 HELIX 7 7 GLU A 194 ARG A 211 1 18 HELIX 8 8 VAL A 254 TYR A 271 1 18 HELIX 9 9 VAL A 276 GLY A 285 1 10 HELIX 10 10 THR A 296 LEU A 310 1 15 HELIX 11 11 ASP A 364 TRP A 383 1 20 HELIX 12 12 GLN A 394 THR A 403 1 10 HELIX 13 13 GLN A 475 ASP A 488 1 14 HELIX 14 14 SER A 499 ALA A 508 1 10 HELIX 15 15 SER A 515 LYS A 528 1 14 HELIX 16 16 GLY A 543 SER A 553 1 11 HELIX 17 17 THR B 27 GLU B 44 1 18 HELIX 18 18 PHE B 77 THR B 84 1 8 HELIX 19 19 GLY B 99 LYS B 103 5 5 HELIX 20 20 GLY B 112 SER B 117 5 6 HELIX 21 21 GLU B 122 ALA B 129 5 8 HELIX 22 22 SER B 134 GLU B 138 5 5 HELIX 23 23 LYS B 154 PHE B 160 1 7 HELIX 24 24 PHE B 160 ASN B 175 1 16 HELIX 25 25 HIS B 198 TRP B 212 1 15 HELIX 26 26 THR B 253 TYR B 271 1 19 HELIX 27 27 VAL B 276 LYS B 281 1 6 HELIX 28 28 GLU B 298 LYS B 311 1 14 HELIX 29 29 ARG B 358 THR B 362 5 5 HELIX 30 30 ASN B 363 TRP B 383 1 21 HELIX 31 31 GLN B 394 THR B 400 1 7 HELIX 32 32 TRP B 401 TYR B 405 5 5 SHEET 1 A 2 VAL A 60 PHE A 61 0 SHEET 2 A 2 LEU A 74 VAL A 75 -1 O LEU A 74 N PHE A 61 SHEET 1 B 3 SER A 105 ASP A 110 0 SHEET 2 B 3 ASP A 186 SER A 191 -1 O LEU A 187 N LEU A 109 SHEET 3 B 3 VAL A 179 TYR A 183 -1 N VAL A 179 O GLY A 190 SHEET 1 C 2 THR A 131 ILE A 132 0 SHEET 2 C 2 ILE A 142 ARG A 143 -1 N ILE A 142 O ILE A 132 SHEET 1 D 4 PHE A 227 LEU A 228 0 SHEET 2 D 4 TYR A 232 LEU A 234 -1 N LEU A 234 O PHE A 227 SHEET 3 D 4 LYS A 238 VAL A 241 -1 O THR A 240 N GLU A 233 SHEET 4 D 4 HIS A 315 VAL A 317 -1 O GLY A 316 N TRP A 239 SHEET 1 E 2 TRP A 252 THR A 253 0 SHEET 2 E 2 VAL A 292 ILE A 293 -1 N ILE A 293 O TRP A 252 SHEET 1 F 5 ASN A 348 TYR A 354 0 SHEET 2 F 5 TRP A 337 TYR A 342 -1 O TRP A 337 N TYR A 354 SHEET 3 F 5 ILE A 326 LYS A 331 -1 O ILE A 326 N TYR A 342 SHEET 4 F 5 LYS A 388 LEU A 391 1 O LYS A 388 N ALA A 327 SHEET 5 F 5 TRP A 414 PHE A 416 1 N GLU A 415 O PHE A 389 SHEET 1 G 2 GLY A 453 LYS A 454 0 SHEET 2 G 2 PRO A 468 LEU A 469 -1 O LEU A 469 N GLY A 453 SHEET 1 H 2 VAL A 496 THR A 497 0 SHEET 2 H 2 ALA A 534 TRP A 535 1 O ALA A 534 N THR A 497 SHEET 1 I 3 ILE B 47 LYS B 49 0 SHEET 2 I 3 ILE B 142 TYR B 146 -1 N GLN B 145 O SER B 48 SHEET 3 I 3 PHE B 130 ILE B 132 -1 O PHE B 130 N TYR B 144 SHEET 1 J 2 VAL B 60 ALA B 62 0 SHEET 2 J 2 LYS B 73 VAL B 75 -1 N LEU B 74 O PHE B 61 SHEET 1 K 4 VAL B 179 GLN B 182 0 SHEET 2 K 4 ASP B 186 GLY B 190 -1 N TYR B 188 O TYR B 181 SHEET 3 K 4 VAL B 106 ASP B 110 -1 N THR B 107 O VAL B 189 SHEET 4 K 4 TYR B 232 LEU B 234 -1 O TYR B 232 N VAL B 108 SHEET 1 L 5 ASN B 348 GLY B 352 0 SHEET 2 L 5 TRP B 337 TYR B 342 -1 N TYR B 339 O GLY B 352 SHEET 3 L 5 ILE B 326 LYS B 331 -1 N ILE B 326 O TYR B 342 SHEET 4 L 5 LYS B 388 LEU B 391 1 O LYS B 388 N ALA B 327 SHEET 5 L 5 TRP B 414 PHE B 416 1 O GLU B 415 N LEU B 391 CRYST1 238.600 72.700 95.300 90.00 105.60 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004190 0.000000 0.001170 0.00000 SCALE2 0.000000 0.013760 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010890 0.00000 MASTER 468 0 0 32 36 0 0 6 0 0 0 76 END