HEADER SUGAR BINDING PROTEIN 24-MAY-99 1QDO TITLE MAN(APLHA1-3)MAN(ALPHA1-O)METHYL CONCANAVALIN A COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (CONCANAVALIN A); COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: CON A; COMPND 5 OTHER_DETAILS: CO-CRYSTALS OF CONCANAVALIN A WITH METHYL-3-O-(ALPHA- COMPND 6 D-MANNOPYRANOSYL)-ALPHA-D- MANNOPYRANOSIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANAVALIA ENSIFORMIS; SOURCE 3 ORGANISM_COMMON: JACK BEAN; SOURCE 4 ORGANISM_TAXID: 3823; SOURCE 5 OTHER_DETAILS: CANAVALIA ENSIFORMIS BEANS KEYWDS PLANT LECTIN, CARBOHYDRATE BINDING, DIMANNOSE, CONCANAVALIN A, SUGAR KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.BOUCKAERT,R.LORIS,L.WYNS REVDAT 4 29-JUL-20 1QDO 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 24-FEB-09 1QDO 1 VERSN REVDAT 2 01-APR-03 1QDO 1 JRNL REVDAT 1 14-OCT-99 1QDO 0 JRNL AUTH J.BOUCKAERT,T.W.HAMELRYCK,L.WYNS,R.LORIS JRNL TITL THE CRYSTAL STRUCTURES OF MAN(ALPHA1-3)MAN(ALPHA1-O)ME AND JRNL TITL 2 MAN(ALPHA1-6)MAN(ALPHA1-O)ME IN COMPLEX WITH CONCANAVALIN A. JRNL REF J.BIOL.CHEM. V. 274 29188 1999 JRNL REFN ISSN 0021-9258 JRNL PMID 10506175 JRNL DOI 10.1074/JBC.274.41.29188 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.LORIS,D.MAES,F.POORTMANS,L.WYNS,J.BOUCKAERT REMARK 1 TITL CONCANAVALIN A CRYSTALLIZED IN COMPLEX WITH THE REMARK 1 TITL 2 TRISACCHARIDE REMARK 1 TITL 3 3,6-DI-O-(ALPHA-D-MANNOPYRANOSYL)-ALPHA-D-MANNOPYRANOSIDE REMARK 1 REF J.BIOL.CHEM. V. 271 30614 1996 REMARK 1 REFN ISSN 0021-9258 REMARK 1 DOI 10.1074/JBC.271.48.30614 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.H.NAISMITH,R.A.FIELD REMARK 1 TITL STRUCTURAL BASIS OF TRIMANNOSIDE RECOGNITION BY CONCANAVALIN REMARK 1 TITL 2 A REMARK 1 REF J.BIOL.CHEM. V. 271 972 1996 REMARK 1 REFN ISSN 0021-9258 REMARK 1 DOI 10.1074/JBC.271.2.972 REMARK 1 REFERENCE 3 REMARK 1 AUTH D.K.MANDAL,N.KISHORE,C.F.BREWER REMARK 1 TITL THERMODYNAMICS OF LECTIN-CARBOHYDRATE INTERACTIONS. REMARK 1 TITL 2 TITRATION MICROCALORIMETRY MEASUREMENTS OF THE BINDING OF REMARK 1 TITL 3 N-LINKED CARBOHYDRATES AND OVALBUMIN TO CONCANAVALIN A REMARK 1 REF BIOCHEMISTRY V. 33 1149 1994 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 24262 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2169 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.93 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2701 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE : 0.4160 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7236 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 33 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.826 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.39 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.699 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : RESTRAINTS WEIGHT-NCS=602 SIGB=2.5 REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : 2.5 ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NCS RESTRAINTS GROUPED B-FACTOR REMARK 3 REFINEMENT REMARK 4 REMARK 4 1QDO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAY-99. REMARK 100 THE DEPOSITION ID IS D_1000009109. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-99 REMARK 200 TEMPERATURE (KELVIN) : 291.0 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : COLLIMATOR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24411 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.16800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 0.60300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1ENQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DROP: 5 MICROLITER 5 MG/ML CON A, 5 MM REMARK 280 SUGAR + 5 MICROLITER 14% PEG 8000, 35 MM POTASSIUM PHOSPHATE; REMARK 280 500 MICROLITER BOTTOM SOLUTION, PH 8.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.26500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS A TETRAMER, COMPOSED OF REMARK 300 IDENTICAL MONOMERS OF 237 AMINO ACIDS. REMARK 300 THE FOLLOWING RESIDUES ARE IN WEAK ELECTRON DENSITY: REMARK 300 FROM 118 TO 121 AND 205. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 9 65.51 -116.57 REMARK 500 SER A 21 23.58 -44.66 REMARK 500 VAL A 57 -62.16 -90.40 REMARK 500 ASN A 69 71.70 66.86 REMARK 500 SER A 168 72.60 40.52 REMARK 500 ASP A 203 -158.76 -87.55 REMARK 500 SER A 225 46.68 -83.66 REMARK 500 ARG A 228 -4.16 -53.75 REMARK 500 ASP A 235 -155.67 -114.28 REMARK 500 SER B 21 36.01 -68.36 REMARK 500 ASN B 69 33.89 75.86 REMARK 500 SER B 117 146.91 -30.91 REMARK 500 THR B 150 98.85 -60.62 REMARK 500 SER B 160 -178.88 -67.00 REMARK 500 SER B 168 49.78 33.79 REMARK 500 ASP B 203 -145.98 -79.00 REMARK 500 SER B 225 42.23 -99.62 REMARK 500 SER C 21 26.99 -57.25 REMARK 500 LYS C 30 16.62 59.12 REMARK 500 ASN C 69 60.92 62.74 REMARK 500 ASN C 104 61.41 -118.55 REMARK 500 ASP C 151 -24.76 75.81 REMARK 500 ASP C 203 -144.97 -103.48 REMARK 500 SER C 225 40.94 -69.52 REMARK 500 ARG C 228 -18.91 -45.44 REMARK 500 ASP C 235 -168.74 -129.04 REMARK 500 SER D 21 32.69 -80.40 REMARK 500 LYS D 30 8.36 57.03 REMARK 500 SER D 56 2.65 -65.13 REMARK 500 SER D 117 147.74 -33.77 REMARK 500 ASP D 203 -151.57 -101.99 REMARK 500 ARG D 228 -12.08 -48.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 54 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 240 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 8 OE2 REMARK 620 2 ASP A 10 OD2 77.6 REMARK 620 3 ASP A 19 OD1 156.0 79.8 REMARK 620 4 HIS A 24 NE2 100.6 73.3 80.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 241 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD1 REMARK 620 2 ASP A 10 OD2 40.6 REMARK 620 3 TYR A 12 O 70.9 94.8 REMARK 620 4 ASN A 14 OD1 157.8 141.7 87.4 REMARK 620 5 ASP A 19 OD2 77.8 51.7 75.8 92.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 242 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 8 OE2 REMARK 620 2 ASP B 10 OD2 93.8 REMARK 620 3 ASP B 19 OD1 171.8 91.0 REMARK 620 4 HIS B 24 NE2 103.5 82.9 83.6 REMARK 620 5 HOH B1242 O 91.8 166.8 84.9 84.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 243 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 10 OD1 REMARK 620 2 ASP B 10 OD2 49.6 REMARK 620 3 TYR B 12 O 73.0 102.5 REMARK 620 4 ASP B 19 OD2 89.9 62.8 71.5 REMARK 620 5 HOH B1240 O 108.4 65.7 156.5 85.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 244 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 8 OE2 REMARK 620 2 ASP C 10 OD2 80.2 REMARK 620 3 ASP C 19 OD1 163.8 84.0 REMARK 620 4 HIS C 24 NE2 86.7 76.5 85.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 245 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 10 OD2 REMARK 620 2 ASP C 10 OD1 43.3 REMARK 620 3 TYR C 12 O 107.5 87.7 REMARK 620 4 ASN C 14 OD1 152.2 164.1 82.4 REMARK 620 5 ASP C 19 OD2 59.6 94.4 84.1 96.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 246 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 8 OE2 REMARK 620 2 ASP D 10 OD2 89.2 REMARK 620 3 ASP D 19 OD1 164.2 102.0 REMARK 620 4 HIS D 24 NE2 112.2 91.5 78.9 REMARK 620 5 HOH D3243 O 88.2 173.0 79.3 95.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 247 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 10 OD1 REMARK 620 2 ASP D 10 OD2 48.9 REMARK 620 3 TYR D 12 O 76.9 108.8 REMARK 620 4 ASP D 19 OD2 99.4 66.4 85.5 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QDC RELATED DB: PDB REMARK 900 MAN(APLHA1-6)MAN(ALPHA1-O)METHYL CONCANAVALIN A COMPLEX DBREF 1QDO A 1 237 UNP P55915 CONA_CANBR 1 237 DBREF 1QDO B 1 237 UNP P55915 CONA_CANBR 1 237 DBREF 1QDO C 1 237 UNP P55915 CONA_CANBR 1 237 DBREF 1QDO D 1 237 UNP P55915 CONA_CANBR 1 237 SEQRES 1 A 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP THR TYR PRO SEQRES 2 A 237 ASN THR ASP ILE GLY ASP PRO SER TYR PRO HIS ILE GLY SEQRES 3 A 237 ILE ASP ILE LYS SER VAL ARG SER LYS LYS THR ALA LYS SEQRES 4 A 237 TRP ASN MET GLN ASN GLY LYS VAL GLY THR ALA HIS ILE SEQRES 5 A 237 ILE TYR ASN SER VAL ASP LYS ARG LEU SER ALA VAL VAL SEQRES 6 A 237 SER TYR PRO ASN ALA ASP SER ALA THR VAL SER TYR ASP SEQRES 7 A 237 VAL ASP LEU ASP ASN VAL LEU PRO GLU TRP VAL ARG VAL SEQRES 8 A 237 GLY LEU SER ALA SER THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 A 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS SER SEQRES 10 A 237 ASN SER THR HIS GLU THR ASN ALA LEU HIS PHE MET PHE SEQRES 11 A 237 ASN GLN PHE SER LYS ASP GLN LYS ASP LEU ILE LEU GLN SEQRES 12 A 237 GLY ASP ALA THR THR GLY THR ASP GLY ASN LEU GLU LEU SEQRES 13 A 237 THR ARG VAL SER SER ASN GLY SER PRO GLN GLY SER SER SEQRES 14 A 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 A 237 GLU SER SER ALA VAL VAL ALA SER PHE GLU ALA THR PHE SEQRES 16 A 237 THR PHE LEU ILE LYS SER PRO ASP SER HIS PRO ALA ASP SEQRES 17 A 237 GLY ILE ALA PHE PHE ILE SER ASN ILE ASP SER SER ILE SEQRES 18 A 237 PRO SER GLY SER THR GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 A 237 ASP ALA ASN SEQRES 1 B 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP THR TYR PRO SEQRES 2 B 237 ASN THR ASP ILE GLY ASP PRO SER TYR PRO HIS ILE GLY SEQRES 3 B 237 ILE ASP ILE LYS SER VAL ARG SER LYS LYS THR ALA LYS SEQRES 4 B 237 TRP ASN MET GLN ASN GLY LYS VAL GLY THR ALA HIS ILE SEQRES 5 B 237 ILE TYR ASN SER VAL ASP LYS ARG LEU SER ALA VAL VAL SEQRES 6 B 237 SER TYR PRO ASN ALA ASP SER ALA THR VAL SER TYR ASP SEQRES 7 B 237 VAL ASP LEU ASP ASN VAL LEU PRO GLU TRP VAL ARG VAL SEQRES 8 B 237 GLY LEU SER ALA SER THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 B 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS SER SEQRES 10 B 237 ASN SER THR HIS GLU THR ASN ALA LEU HIS PHE MET PHE SEQRES 11 B 237 ASN GLN PHE SER LYS ASP GLN LYS ASP LEU ILE LEU GLN SEQRES 12 B 237 GLY ASP ALA THR THR GLY THR ASP GLY ASN LEU GLU LEU SEQRES 13 B 237 THR ARG VAL SER SER ASN GLY SER PRO GLN GLY SER SER SEQRES 14 B 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 B 237 GLU SER SER ALA VAL VAL ALA SER PHE GLU ALA THR PHE SEQRES 16 B 237 THR PHE LEU ILE LYS SER PRO ASP SER HIS PRO ALA ASP SEQRES 17 B 237 GLY ILE ALA PHE PHE ILE SER ASN ILE ASP SER SER ILE SEQRES 18 B 237 PRO SER GLY SER THR GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 B 237 ASP ALA ASN SEQRES 1 C 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP THR TYR PRO SEQRES 2 C 237 ASN THR ASP ILE GLY ASP PRO SER TYR PRO HIS ILE GLY SEQRES 3 C 237 ILE ASP ILE LYS SER VAL ARG SER LYS LYS THR ALA LYS SEQRES 4 C 237 TRP ASN MET GLN ASN GLY LYS VAL GLY THR ALA HIS ILE SEQRES 5 C 237 ILE TYR ASN SER VAL ASP LYS ARG LEU SER ALA VAL VAL SEQRES 6 C 237 SER TYR PRO ASN ALA ASP SER ALA THR VAL SER TYR ASP SEQRES 7 C 237 VAL ASP LEU ASP ASN VAL LEU PRO GLU TRP VAL ARG VAL SEQRES 8 C 237 GLY LEU SER ALA SER THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 C 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS SER SEQRES 10 C 237 ASN SER THR HIS GLU THR ASN ALA LEU HIS PHE MET PHE SEQRES 11 C 237 ASN GLN PHE SER LYS ASP GLN LYS ASP LEU ILE LEU GLN SEQRES 12 C 237 GLY ASP ALA THR THR GLY THR ASP GLY ASN LEU GLU LEU SEQRES 13 C 237 THR ARG VAL SER SER ASN GLY SER PRO GLN GLY SER SER SEQRES 14 C 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 C 237 GLU SER SER ALA VAL VAL ALA SER PHE GLU ALA THR PHE SEQRES 16 C 237 THR PHE LEU ILE LYS SER PRO ASP SER HIS PRO ALA ASP SEQRES 17 C 237 GLY ILE ALA PHE PHE ILE SER ASN ILE ASP SER SER ILE SEQRES 18 C 237 PRO SER GLY SER THR GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 C 237 ASP ALA ASN SEQRES 1 D 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP THR TYR PRO SEQRES 2 D 237 ASN THR ASP ILE GLY ASP PRO SER TYR PRO HIS ILE GLY SEQRES 3 D 237 ILE ASP ILE LYS SER VAL ARG SER LYS LYS THR ALA LYS SEQRES 4 D 237 TRP ASN MET GLN ASN GLY LYS VAL GLY THR ALA HIS ILE SEQRES 5 D 237 ILE TYR ASN SER VAL ASP LYS ARG LEU SER ALA VAL VAL SEQRES 6 D 237 SER TYR PRO ASN ALA ASP SER ALA THR VAL SER TYR ASP SEQRES 7 D 237 VAL ASP LEU ASP ASN VAL LEU PRO GLU TRP VAL ARG VAL SEQRES 8 D 237 GLY LEU SER ALA SER THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 D 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS SER SEQRES 10 D 237 ASN SER THR HIS GLU THR ASN ALA LEU HIS PHE MET PHE SEQRES 11 D 237 ASN GLN PHE SER LYS ASP GLN LYS ASP LEU ILE LEU GLN SEQRES 12 D 237 GLY ASP ALA THR THR GLY THR ASP GLY ASN LEU GLU LEU SEQRES 13 D 237 THR ARG VAL SER SER ASN GLY SER PRO GLN GLY SER SER SEQRES 14 D 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 D 237 GLU SER SER ALA VAL VAL ALA SER PHE GLU ALA THR PHE SEQRES 16 D 237 THR PHE LEU ILE LYS SER PRO ASP SER HIS PRO ALA ASP SEQRES 17 D 237 GLY ILE ALA PHE PHE ILE SER ASN ILE ASP SER SER ILE SEQRES 18 D 237 PRO SER GLY SER THR GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 D 237 ASP ALA ASN HET MMA E 1 13 HET MAN E 2 11 HET MMA F 1 13 HET MAN F 2 11 HET MMA G 1 13 HET MAN G 2 11 HET MMA H 1 13 HET MAN H 2 11 HET MN A 240 1 HET CA A 241 1 HET MN B 242 1 HET CA B 243 1 HET MN C 244 1 HET CA C 245 1 HET MN D 246 1 HET CA D 247 1 HETNAM MMA METHYL ALPHA-D-MANNOPYRANOSIDE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM MN MANGANESE (II) ION HETNAM CA CALCIUM ION FORMUL 5 MMA 4(C7 H14 O6) FORMUL 5 MAN 4(C6 H12 O6) FORMUL 9 MN 4(MN 2+) FORMUL 10 CA 4(CA 2+) FORMUL 17 HOH *33(H2 O) HELIX 1 1 THR A 15 ILE A 17 5 3 HELIX 2 2 LEU A 81 ASN A 83 5 3 HELIX 3 3 THR A 150 GLY A 152 5 3 HELIX 4 4 GLY A 227 LEU A 229 5 3 HELIX 5 5 THR B 15 ILE B 17 5 3 HELIX 6 6 LEU B 81 ASN B 83 5 3 HELIX 7 7 THR B 150 GLY B 152 5 3 HELIX 8 8 GLY B 227 LEU B 229 5 3 HELIX 9 9 THR C 15 ILE C 17 5 3 HELIX 10 10 LEU C 81 ASN C 83 5 3 HELIX 11 11 THR C 150 GLY C 152 5 3 HELIX 12 12 GLY C 227 LEU C 229 5 3 HELIX 13 13 THR D 15 ILE D 17 5 3 HELIX 14 14 LEU D 81 ASN D 83 5 3 HELIX 15 15 THR D 150 GLY D 152 5 3 HELIX 16 16 GLY D 227 LEU D 229 5 3 SHEET 1 A 7 LYS A 36 LYS A 39 0 SHEET 2 A 7 HIS A 24 ILE A 29 -1 N ILE A 27 O LYS A 36 SHEET 3 A 7 ILE A 4 ASP A 10 -1 N ASP A 10 O HIS A 24 SHEET 4 A 7 GLY A 209 ASN A 216 -1 N ILE A 214 O VAL A 5 SHEET 5 A 7 VAL A 89 SER A 96 -1 N SER A 96 O GLY A 209 SHEET 6 A 7 VAL A 170 PHE A 175 -1 N ALA A 173 O LEU A 93 SHEET 7 A 7 LEU A 140 GLY A 144 -1 N GLN A 143 O ARG A 172 SHEET 1 B 6 ALA A 73 ASP A 78 0 SHEET 2 B 6 ARG A 60 TYR A 67 -1 N VAL A 65 O ALA A 73 SHEET 3 B 6 VAL A 47 ASN A 55 -1 N ILE A 53 O SER A 62 SHEET 4 B 6 VAL A 188 LEU A 198 -1 N PHE A 197 O GLY A 48 SHEET 5 B 6 THR A 105 LYS A 116 -1 N LYS A 116 O VAL A 188 SHEET 6 B 6 THR A 123 PHE A 130 -1 N PHE A 130 O TRP A 109 SHEET 1 C 7 LYS B 36 LYS B 39 0 SHEET 2 C 7 HIS B 24 ILE B 29 -1 N ILE B 27 O LYS B 36 SHEET 3 C 7 ILE B 4 ASP B 10 -1 N ASP B 10 O HIS B 24 SHEET 4 C 7 GLY B 209 ASN B 216 -1 N ILE B 214 O VAL B 5 SHEET 5 C 7 VAL B 89 SER B 96 -1 N SER B 96 O GLY B 209 SHEET 6 C 7 VAL B 170 PHE B 175 -1 N ALA B 173 O LEU B 93 SHEET 7 C 7 LEU B 140 GLY B 144 -1 N GLN B 143 O ARG B 172 SHEET 1 D 6 ALA B 73 ASP B 78 0 SHEET 2 D 6 ARG B 60 TYR B 67 -1 N VAL B 65 O ALA B 73 SHEET 3 D 6 VAL B 47 ASN B 55 -1 N ILE B 53 O SER B 62 SHEET 4 D 6 VAL B 188 LEU B 198 -1 N PHE B 197 O GLY B 48 SHEET 5 D 6 THR B 105 LYS B 116 -1 N LYS B 116 O VAL B 188 SHEET 6 D 6 THR B 123 PHE B 130 -1 N PHE B 130 O TRP B 109 SHEET 1 E 7 LYS C 36 LYS C 39 0 SHEET 2 E 7 HIS C 24 ILE C 29 -1 N ILE C 27 O LYS C 36 SHEET 3 E 7 ILE C 4 ASP C 10 -1 N ASP C 10 O HIS C 24 SHEET 4 E 7 GLY C 209 ASN C 216 -1 N ILE C 214 O VAL C 5 SHEET 5 E 7 VAL C 89 SER C 96 -1 N SER C 96 O GLY C 209 SHEET 6 E 7 VAL C 170 PHE C 175 -1 N ALA C 173 O LEU C 93 SHEET 7 E 7 LEU C 140 GLY C 144 -1 N GLN C 143 O ARG C 172 SHEET 1 F 6 ALA C 73 ASP C 78 0 SHEET 2 F 6 ARG C 60 TYR C 67 -1 N VAL C 65 O ALA C 73 SHEET 3 F 6 VAL C 47 ASN C 55 -1 N ILE C 53 O SER C 62 SHEET 4 F 6 VAL C 188 LEU C 198 -1 N PHE C 197 O GLY C 48 SHEET 5 F 6 THR C 105 LYS C 116 -1 N LYS C 116 O VAL C 188 SHEET 6 F 6 THR C 123 PHE C 130 -1 N PHE C 130 O TRP C 109 SHEET 1 G 7 LYS D 36 LYS D 39 0 SHEET 2 G 7 HIS D 24 ILE D 29 -1 N ILE D 27 O LYS D 36 SHEET 3 G 7 ILE D 4 ASP D 10 -1 N ASP D 10 O HIS D 24 SHEET 4 G 7 GLY D 209 ASN D 216 -1 N ILE D 214 O VAL D 5 SHEET 5 G 7 VAL D 89 SER D 96 -1 N SER D 96 O GLY D 209 SHEET 6 G 7 VAL D 170 PHE D 175 -1 N ALA D 173 O LEU D 93 SHEET 7 G 7 LEU D 140 GLY D 144 -1 N GLN D 143 O ARG D 172 SHEET 1 H 6 ALA D 73 ASP D 78 0 SHEET 2 H 6 ARG D 60 TYR D 67 -1 N VAL D 65 O ALA D 73 SHEET 3 H 6 VAL D 47 ASN D 55 -1 N ILE D 53 O SER D 62 SHEET 4 H 6 VAL D 188 LEU D 198 -1 N PHE D 197 O GLY D 48 SHEET 5 H 6 THR D 105 LYS D 116 -1 N LYS D 116 O VAL D 188 SHEET 6 H 6 THR D 123 PHE D 130 -1 N PHE D 130 O TRP D 109 LINK O3 MMA E 1 C1 MAN E 2 1555 1555 1.42 LINK O3 MMA F 1 C1 MAN F 2 1555 1555 1.42 LINK O3 MMA G 1 C1 MAN G 2 1555 1555 1.41 LINK O3 MMA H 1 C1 MAN H 2 1555 1555 1.41 LINK OE2 GLU A 8 MN MN A 240 1555 1555 1.95 LINK OD2 ASP A 10 MN MN A 240 1555 1555 2.15 LINK OD1 ASP A 10 CA CA A 241 1555 1555 2.54 LINK OD2 ASP A 10 CA CA A 241 1555 1555 3.40 LINK O TYR A 12 CA CA A 241 1555 1555 2.20 LINK OD1 ASN A 14 CA CA A 241 1555 1555 2.96 LINK OD1 ASP A 19 MN MN A 240 1555 1555 2.16 LINK OD2 ASP A 19 CA CA A 241 1555 1555 2.66 LINK NE2 HIS A 24 MN MN A 240 1555 1555 2.63 LINK OE2 GLU B 8 MN MN B 242 1555 1555 2.03 LINK OD2 ASP B 10 MN MN B 242 1555 1555 2.05 LINK OD1 ASP B 10 CA CA B 243 1555 1555 2.43 LINK OD2 ASP B 10 CA CA B 243 1555 1555 2.80 LINK O TYR B 12 CA CA B 243 1555 1555 2.30 LINK OD1 ASP B 19 MN MN B 242 1555 1555 2.21 LINK OD2 ASP B 19 CA CA B 243 1555 1555 2.64 LINK NE2 HIS B 24 MN MN B 242 1555 1555 2.50 LINK MN MN B 242 O HOH B1242 1555 1555 2.12 LINK CA CA B 243 O HOH B1240 1555 1555 2.35 LINK OE2 GLU C 8 MN MN C 244 1555 1555 1.84 LINK OD2 ASP C 10 MN MN C 244 1555 1555 2.04 LINK OD2 ASP C 10 CA CA C 245 1555 1555 3.26 LINK OD1 ASP C 10 CA CA C 245 1555 1555 2.16 LINK O TYR C 12 CA CA C 245 1555 1555 2.22 LINK OD1 ASN C 14 CA CA C 245 1555 1555 2.91 LINK OD1 ASP C 19 MN MN C 244 1555 1555 2.05 LINK OD2 ASP C 19 CA CA C 245 1555 1555 2.41 LINK NE2 HIS C 24 MN MN C 244 1555 1555 2.52 LINK OE2 GLU D 8 MN MN D 246 1555 1555 2.09 LINK OD2 ASP D 10 MN MN D 246 1555 1555 1.87 LINK OD1 ASP D 10 CA CA D 247 1555 1555 2.06 LINK OD2 ASP D 10 CA CA D 247 1555 1555 2.95 LINK O TYR D 12 CA CA D 247 1555 1555 2.40 LINK OD1 ASP D 19 MN MN D 246 1555 1555 2.06 LINK OD2 ASP D 19 CA CA D 247 1555 1555 2.68 LINK NE2 HIS D 24 MN MN D 246 1555 1555 2.62 LINK MN MN D 246 O HOH D3243 1555 1555 1.75 CISPEP 1 ALA A 207 ASP A 208 0 0.41 CISPEP 2 ALA B 207 ASP B 208 0 0.47 CISPEP 3 ALA C 207 ASP C 208 0 0.24 CISPEP 4 ALA D 207 ASP D 208 0 0.17 CRYST1 60.410 64.530 126.960 90.00 93.21 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016554 0.000000 0.000928 0.00000 SCALE2 0.000000 0.015497 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007889 0.00000 MASTER 378 0 16 16 52 0 0 6 0 0 0 76 END