HEADER TRANSFERASE 18-AUG-03 1Q7E TITLE CRYSTAL STRUCTURE OF YFDW PROTEIN FROM E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN YFDW; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: YFDW; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS STRUCTURAL GENOMICS, INTERTWINED DIMER, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 NYSGXRC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.GOGOS,J.GORMAN,L.SHAPIRO,S.K.BURLEY,NEW YORK SGX RESEARCH CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 7 03-FEB-21 1Q7E 1 AUTHOR REMARK SEQADV LINK REVDAT 6 13-JUL-11 1Q7E 1 VERSN REVDAT 5 24-FEB-09 1Q7E 1 VERSN REVDAT 4 25-JAN-05 1Q7E 1 AUTHOR KEYWDS REMARK REVDAT 3 02-MAR-04 1Q7E 1 JRNL REVDAT 2 23-DEC-03 1Q7E 1 REMARK MASTER REVDAT 1 30-SEP-03 1Q7E 0 JRNL AUTH A.GOGOS,J.GORMAN,L.SHAPIRO JRNL TITL STRUCTURE OF ESCHERICHIA COLI YFDW, A TYPE III COA JRNL TITL 2 TRANSFERASE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 60 507 2004 JRNL REFN ISSN 0907-4449 JRNL PMID 14993676 JRNL DOI 10.1107/S0907444904000034 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 53302 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2723 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3156 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 362 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.012 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 1.400 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Q7E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-AUG-03. REMARK 100 THE DEPOSITION ID IS D_1000020009. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAY-03; 01-JAN-03; 01-JAN-03 REMARK 200 TEMPERATURE (KELVIN) : 100; 100; 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y; Y REMARK 200 RADIATION SOURCE : NSLS; APS; APS REMARK 200 BEAMLINE : X9A; 31-ID; 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793; 0.9793; 0.9793 REMARK 200 MONOCHROMATOR : NULL; NULL; NULL REMARK 200 OPTICS : NULL; NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; MARRESEARCH; REMARK 200 MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56025 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09800 REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.29500 REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 70% MPD, 0.1 M BIS-TRIS PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K. 70% MPD, 0.1 M BIS- REMARK 280 TRIS PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K. 70% REMARK 280 MPD, 0.1 M BIS-TRIS PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.18300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.80250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.18300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.80250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER GENERATED BY: REMARK 300 XYZ(1) = -1.0000*X+ 0.0000*Y+ 0.0000*Z+ 92.3658 REMARK 300 XYZ(2) = 0.0000*X+ 1.0000*Y+ 0.0000*Z+ -0.0016 REMARK 300 XYZ(3) = 0.0000*X+ 0.0000*Y+ -1.0000*Z+ 0.0004 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 16570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -247.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 92.36600 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 102 REMARK 465 ALA A 103 REMARK 465 ILE A 104 REMARK 465 ASP A 105 REMARK 465 HIS A 106 REMARK 465 MET A 107 REMARK 465 GLY A 108 REMARK 465 GLY A 420 REMARK 465 GLY A 421 REMARK 465 SER A 422 REMARK 465 HIS A 423 REMARK 465 HIS A 424 REMARK 465 HIS A 425 REMARK 465 HIS A 426 REMARK 465 HIS A 427 REMARK 465 HIS A 428 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 11 CE NZ REMARK 470 ARG A 40 CZ NH1 NH2 REMARK 470 LYS A 77 CG CD CE NZ REMARK 470 LYS A 82 CG CD CE NZ REMARK 470 GLU A 116 CG CD OE1 OE2 REMARK 470 GLU A 131 CG CD OE1 OE2 REMARK 470 LYS A 139 NZ REMARK 470 GLU A 190 CD OE1 OE2 REMARK 470 GLU A 419 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 64 SE MSE A 64 CE -0.355 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 18 -122.01 67.47 REMARK 500 VAL A 43 -60.79 -133.63 REMARK 500 ASN A 118 89.99 -153.17 REMARK 500 GLU A 142 -65.73 -23.47 REMARK 500 ASP A 171 -85.29 -104.89 REMARK 500 LEU A 365 -20.65 73.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MET A 500 REMARK 610 MET A 600 REMARK 610 MPD A 1100 REMARK 610 MPD A 1200 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MET A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MET A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PQY RELATED DB: PDB REMARK 900 RELATED ID: 1Q6Y RELATED DB: PDB REMARK 900 RELATED ID: NYSGXRC-T783 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES SER2 AND LEU3 ARISE FROM A CLONING ARTIFACT THAT REMARK 999 RESULTS IN A 2 AMINO ACID INSERTION. RESIDUE NUMBERS AFTER REMARK 999 THIS INSERTION ARE EQUAL TO 2 PLUS THE CORRECT RESIDUE REMARK 999 NUMBER DBREF 1Q7E A 1 418 UNP P69902 FCTA_ECOLI 1 416 SEQADV 1Q7E SER A 2 UNP P69902 INSERTION SEQADV 1Q7E LEU A 3 UNP P69902 INSERTION SEQADV 1Q7E MSE A 27 UNP P69902 MET 25 MODIFIED RESIDUE SEQADV 1Q7E MSE A 64 UNP P69902 MET 62 MODIFIED RESIDUE SEQADV 1Q7E MSE A 85 UNP P69902 MET 83 MODIFIED RESIDUE SEQADV 1Q7E MSE A 176 UNP P69902 MET 174 MODIFIED RESIDUE SEQADV 1Q7E MSE A 200 UNP P69902 MET 198 MODIFIED RESIDUE SEQADV 1Q7E MSE A 202 UNP P69902 MET 200 MODIFIED RESIDUE SEQADV 1Q7E MSE A 343 UNP P69902 MET 341 MODIFIED RESIDUE SEQADV 1Q7E MSE A 376 UNP P69902 MET 374 MODIFIED RESIDUE SEQADV 1Q7E MSE A 412 UNP P69902 MET 410 MODIFIED RESIDUE SEQADV 1Q7E GLU A 419 UNP P69902 EXPRESSION TAG SEQADV 1Q7E GLY A 420 UNP P69902 EXPRESSION TAG SEQADV 1Q7E GLY A 421 UNP P69902 EXPRESSION TAG SEQADV 1Q7E SER A 422 UNP P69902 EXPRESSION TAG SEQADV 1Q7E HIS A 423 UNP P69902 EXPRESSION TAG SEQADV 1Q7E HIS A 424 UNP P69902 EXPRESSION TAG SEQADV 1Q7E HIS A 425 UNP P69902 EXPRESSION TAG SEQADV 1Q7E HIS A 426 UNP P69902 EXPRESSION TAG SEQADV 1Q7E HIS A 427 UNP P69902 EXPRESSION TAG SEQADV 1Q7E HIS A 428 UNP P69902 EXPRESSION TAG SEQRES 1 A 428 MET SER LEU SER THR PRO LEU GLN GLY ILE LYS VAL LEU SEQRES 2 A 428 ASP PHE THR GLY VAL GLN SER GLY PRO SER CYS THR GLN SEQRES 3 A 428 MSE LEU ALA TRP PHE GLY ALA ASP VAL ILE LYS ILE GLU SEQRES 4 A 428 ARG PRO GLY VAL GLY ASP VAL THR ARG HIS GLN LEU ARG SEQRES 5 A 428 ASP ILE PRO ASP ILE ASP ALA LEU TYR PHE THR MSE LEU SEQRES 6 A 428 ASN SER ASN LYS ARG SER ILE GLU LEU ASN THR LYS THR SEQRES 7 A 428 ALA GLU GLY LYS GLU VAL MSE GLU LYS LEU ILE ARG GLU SEQRES 8 A 428 ALA ASP ILE LEU VAL GLU ASN PHE HIS PRO GLY ALA ILE SEQRES 9 A 428 ASP HIS MET GLY PHE THR TRP GLU HIS ILE GLN GLU ILE SEQRES 10 A 428 ASN PRO ARG LEU ILE PHE GLY SER ILE LYS GLY PHE ASP SEQRES 11 A 428 GLU CYS SER PRO TYR VAL ASN VAL LYS ALA TYR GLU ASN SEQRES 12 A 428 VAL ALA GLN ALA ALA GLY GLY ALA ALA SER THR THR GLY SEQRES 13 A 428 PHE TRP ASP GLY PRO PRO LEU VAL SER ALA ALA ALA LEU SEQRES 14 A 428 GLY ASP SER ASN THR GLY MSE HIS LEU LEU ILE GLY LEU SEQRES 15 A 428 LEU ALA ALA LEU LEU HIS ARG GLU LYS THR GLY ARG GLY SEQRES 16 A 428 GLN ARG VAL THR MSE SER MSE GLN ASP ALA VAL LEU ASN SEQRES 17 A 428 LEU CYS ARG VAL LYS LEU ARG ASP GLN GLN ARG LEU ASP SEQRES 18 A 428 LYS LEU GLY TYR LEU GLU GLU TYR PRO GLN TYR PRO ASN SEQRES 19 A 428 GLY THR PHE GLY ASP ALA VAL PRO ARG GLY GLY ASN ALA SEQRES 20 A 428 GLY GLY GLY GLY GLN PRO GLY TRP ILE LEU LYS CYS LYS SEQRES 21 A 428 GLY TRP GLU THR ASP PRO ASN ALA TYR ILE TYR PHE THR SEQRES 22 A 428 ILE GLN GLU GLN ASN TRP GLU ASN THR CYS LYS ALA ILE SEQRES 23 A 428 GLY LYS PRO GLU TRP ILE THR ASP PRO ALA TYR SER THR SEQRES 24 A 428 ALA HIS ALA ARG GLN PRO HIS ILE PHE ASP ILE PHE ALA SEQRES 25 A 428 GLU ILE GLU LYS TYR THR VAL THR ILE ASP LYS HIS GLU SEQRES 26 A 428 ALA VAL ALA TYR LEU THR GLN PHE ASP ILE PRO CYS ALA SEQRES 27 A 428 PRO VAL LEU SER MSE LYS GLU ILE SER LEU ASP PRO SER SEQRES 28 A 428 LEU ARG GLN SER GLY SER VAL VAL GLU VAL GLU GLN PRO SEQRES 29 A 428 LEU ARG GLY LYS TYR LEU THR VAL GLY CYS PRO MSE LYS SEQRES 30 A 428 PHE SER ALA PHE THR PRO ASP ILE LYS ALA ALA PRO LEU SEQRES 31 A 428 LEU GLY GLU HIS THR ALA ALA VAL LEU GLN GLU LEU GLY SEQRES 32 A 428 TYR SER ASP ASP GLU ILE ALA ALA MSE LYS GLN ASN HIS SEQRES 33 A 428 ALA ILE GLU GLY GLY SER HIS HIS HIS HIS HIS HIS MODRES 1Q7E MSE A 27 MET SELENOMETHIONINE MODRES 1Q7E MSE A 64 MET SELENOMETHIONINE MODRES 1Q7E MSE A 85 MET SELENOMETHIONINE MODRES 1Q7E MSE A 176 MET SELENOMETHIONINE MODRES 1Q7E MSE A 200 MET SELENOMETHIONINE MODRES 1Q7E MSE A 202 MET SELENOMETHIONINE MODRES 1Q7E MSE A 343 MET SELENOMETHIONINE MODRES 1Q7E MSE A 376 MET SELENOMETHIONINE MODRES 1Q7E MSE A 412 MET SELENOMETHIONINE HET MSE A 27 16 HET MSE A 64 8 HET MSE A 85 8 HET MSE A 176 8 HET MSE A 200 8 HET MSE A 202 8 HET MSE A 343 8 HET MSE A 376 8 HET MSE A 412 8 HET MET A 500 6 HET MET A 600 8 HET MPD A 700 8 HET MPD A 800 8 HET MPD A 900 8 HET MPD A1000 8 HET MPD A1100 5 HET MPD A1200 6 HET MPD A1300 8 HETNAM MSE SELENOMETHIONINE HETNAM MET METHIONINE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 MET 2(C5 H11 N O2 S) FORMUL 4 MPD 7(C6 H14 O2) FORMUL 11 HOH *362(H2 O) HELIX 1 1 GLN A 19 PHE A 31 1 13 HELIX 2 2 ASP A 45 HIS A 49 5 5 HELIX 3 3 ALA A 59 MSE A 64 1 6 HELIX 4 4 THR A 78 ALA A 92 1 15 HELIX 5 5 THR A 110 ASN A 118 1 9 HELIX 6 6 TYR A 141 GLY A 149 1 9 HELIX 7 7 GLY A 150 THR A 155 1 6 HELIX 8 8 ASP A 171 GLY A 193 1 23 HELIX 9 9 MSE A 202 CYS A 210 1 9 HELIX 10 10 CYS A 210 GLY A 224 1 15 HELIX 11 11 GLN A 275 GLN A 277 5 3 HELIX 12 12 ASN A 278 ILE A 286 1 9 HELIX 13 13 LYS A 288 THR A 293 5 6 HELIX 14 14 THR A 299 GLN A 304 1 6 HELIX 15 15 HIS A 306 VAL A 319 1 14 HELIX 16 16 ASP A 322 THR A 331 1 10 HELIX 17 17 GLN A 332 ASP A 334 5 3 HELIX 18 18 SER A 342 ASP A 349 1 8 HELIX 19 19 ASP A 349 SER A 355 1 7 HELIX 20 20 HIS A 394 LEU A 402 1 9 HELIX 21 21 SER A 405 GLU A 419 1 15 SHEET 1 A 6 ARG A 70 GLU A 73 0 SHEET 2 A 6 ASP A 34 GLU A 39 1 N LYS A 37 O ARG A 70 SHEET 3 A 6 LYS A 11 ASP A 14 1 N ASP A 14 O ILE A 36 SHEET 4 A 6 ILE A 94 GLU A 97 1 O ILE A 94 N LEU A 13 SHEET 5 A 6 ILE A 122 LYS A 127 1 O GLY A 124 N LEU A 95 SHEET 6 A 6 ARG A 197 SER A 201 1 O VAL A 198 N PHE A 123 SHEET 1 B 3 GLY A 254 LYS A 258 0 SHEET 2 B 3 TYR A 269 THR A 273 -1 O PHE A 272 N TRP A 255 SHEET 3 B 3 CYS A 337 PRO A 339 -1 O ALA A 338 N TYR A 271 SHEET 1 C 2 VAL A 358 GLN A 363 0 SHEET 2 C 2 GLY A 367 VAL A 372 -1 O GLY A 367 N GLN A 363 LINK C GLN A 26 N AMSE A 27 1555 1555 1.32 LINK C GLN A 26 N BMSE A 27 1555 1555 1.33 LINK C AMSE A 27 N LEU A 28 1555 1555 1.33 LINK C BMSE A 27 N LEU A 28 1555 1555 1.34 LINK C THR A 63 N MSE A 64 1555 1555 1.34 LINK C MSE A 64 N LEU A 65 1555 1555 1.33 LINK C VAL A 84 N MSE A 85 1555 1555 1.33 LINK C MSE A 85 N GLU A 86 1555 1555 1.33 LINK C GLY A 175 N MSE A 176 1555 1555 1.32 LINK C MSE A 176 N HIS A 177 1555 1555 1.34 LINK C THR A 199 N MSE A 200 1555 1555 1.33 LINK C MSE A 200 N SER A 201 1555 1555 1.33 LINK C SER A 201 N MSE A 202 1555 1555 1.33 LINK C MSE A 202 N GLN A 203 1555 1555 1.35 LINK C SER A 342 N MSE A 343 1555 1555 1.33 LINK C MSE A 343 N BLYS A 344 1555 1555 1.33 LINK C MSE A 343 N ALYS A 344 1555 1555 1.33 LINK C PRO A 375 N MSE A 376 1555 1555 1.32 LINK C MSE A 376 N LYS A 377 1555 1555 1.33 LINK C ALA A 411 N MSE A 412 1555 1555 1.33 LINK C MSE A 412 N LYS A 413 1555 1555 1.33 CISPEP 1 TYR A 232 PRO A 233 0 -2.03 SITE 1 AC1 11 ASN A 98 PHE A 99 HIS A 100 PRO A 101 SITE 2 AC1 11 ILE A 126 LYS A 127 GLY A 128 LYS A 139 SITE 3 AC1 11 ALA A 140 HOH A1625 HOH A1662 SITE 1 AC2 6 TRP A 255 PHE A 308 ALA A 312 GLU A 315 SITE 2 AC2 6 HOH A1395 HOH A1527 SITE 1 AC3 8 GLY A 160 ARG A 243 TRP A 262 GLU A 263 SITE 2 AC3 8 ASP A 265 PRO A 266 TYR A 269 HOH A1460 SITE 1 AC4 8 GLU A 73 LEU A 74 ASN A 75 THR A 395 SITE 2 AC4 8 MSE A 412 HIS A 416 HOH A1530 HOH A1536 SITE 1 AC5 6 TRP A 158 PRO A 230 GLN A 231 GLY A 235 SITE 2 AC5 6 HOH A1387 HOH A1425 SITE 1 AC6 2 ALA A 285 HOH A1634 SITE 1 AC7 4 PRO A 134 ALA A 328 THR A 331 HOH A1493 SITE 1 AC8 5 THR A 5 TRP A 30 GLY A 32 PRO A 383 SITE 2 AC8 5 ASP A 384 SITE 1 AC9 7 LYS A 11 LEU A 13 LEU A 88 GLU A 91 SITE 2 AC9 7 GLU A 401 HOH A1430 HOH A1558 CRYST1 92.366 69.605 73.219 90.00 108.63 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010826 0.000000 0.003650 0.00000 SCALE2 0.000000 0.014367 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014413 0.00000 MASTER 389 0 18 21 11 0 17 6 0 0 0 33 END