HEADER HYDROLASE 11-AUG-03 1Q5U TITLE HUMAN DUTP PYROPHOSPHATASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUTP PYROPHOSPHATASE; COMPND 3 CHAIN: X, Y, Z; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HDUT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PEM409 KEYWDS DNA REPAIR, ENZYME-DNA INTERACTIONS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.D.MOL,J.M.HARRIS,E.M.MCINTOSH,J.A.TAINER REVDAT 3 13-JUL-11 1Q5U 1 VERSN REVDAT 2 24-FEB-09 1Q5U 1 VERSN REVDAT 1 19-AUG-03 1Q5U 0 JRNL AUTH C.D.MOL,J.M.HARRIS,E.M.MCINTOSH,J.A.TAINER JRNL TITL HUMAN DUTP PYROPHOSPHATASE: URACIL RECOGNITION BY A BETA JRNL TITL 2 HAIRPIN AND ACTIVE SITES FORMED BY THREE SEPARATE SUBUNITS JRNL REF STRUCTURE V. 4 1077 1996 JRNL REFN ISSN 0969-2126 JRNL PMID 8805593 JRNL DOI 10.1016/S0969-2126(96)00114-1 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 27503 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1467 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2040 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3057 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 304 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 20.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.84000 REMARK 3 B22 (A**2) : -0.67000 REMARK 3 B33 (A**2) : 1.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.188 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.162 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.617 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3127 ; 0.007 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4224 ; 0.987 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 387 ; 5.821 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 449 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2425 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1050 ; 0.168 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 246 ; 0.126 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 51 ; 0.149 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.128 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1932 ; 0.374 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3087 ; 0.746 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1195 ; 1.210 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1137 ; 2.061 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X -2 X 128 REMARK 3 ORIGIN FOR THE GROUP (A): 6.5480 36.9850 8.3170 REMARK 3 T TENSOR REMARK 3 T11: 0.1006 T22: 0.0834 REMARK 3 T33: 0.0620 T12: 0.0102 REMARK 3 T13: -0.0282 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 0.7187 L22: 1.1590 REMARK 3 L33: 3.2333 L12: 0.2101 REMARK 3 L13: 0.4316 L23: 0.3785 REMARK 3 S TENSOR REMARK 3 S11: -0.0170 S12: 0.0904 S13: -0.0317 REMARK 3 S21: -0.2032 S22: -0.0639 S23: 0.1547 REMARK 3 S31: -0.0059 S32: -0.2253 S33: 0.0809 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Y 0 Y 126 REMARK 3 ORIGIN FOR THE GROUP (A): 15.4820 24.2260 19.5560 REMARK 3 T TENSOR REMARK 3 T11: 0.0233 T22: 0.0484 REMARK 3 T33: 0.0056 T12: -0.0020 REMARK 3 T13: 0.0019 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 2.0099 L22: 1.9710 REMARK 3 L33: 0.9869 L12: -0.9885 REMARK 3 L13: -0.1024 L23: 0.0358 REMARK 3 S TENSOR REMARK 3 S11: -0.0217 S12: -0.0057 S13: -0.0949 REMARK 3 S21: 0.0079 S22: -0.0034 S23: 0.0723 REMARK 3 S31: 0.0005 S32: -0.0530 S33: 0.0252 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Z -5 Z 126 REMARK 3 ORIGIN FOR THE GROUP (A): 14.0460 43.1010 24.8330 REMARK 3 T TENSOR REMARK 3 T11: 0.0458 T22: 0.0525 REMARK 3 T33: 0.0307 T12: 0.0069 REMARK 3 T13: -0.0009 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 1.3294 L22: 1.5149 REMARK 3 L33: 0.9930 L12: 0.1206 REMARK 3 L13: 0.0506 L23: 0.3388 REMARK 3 S TENSOR REMARK 3 S11: 0.0107 S12: 0.0267 S13: 0.1078 REMARK 3 S21: -0.1210 S22: 0.0091 S23: 0.0349 REMARK 3 S31: -0.1143 S32: -0.0327 S33: -0.0197 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Q5U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-03. REMARK 100 THE RCSB ID CODE IS RCSB019953. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-95 REMARK 200 TEMPERATURE (KELVIN) : 295 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29007 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : 0.09100 REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.45300 REMARK 200 R SYM FOR SHELL (I) : 0.45300 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1DUP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1M SODIUM CITRATE, PH 8.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 36.49550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.33300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.49550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.33300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS THE BIOLOGICALLY-RELEVANT REMARK 300 TRIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X, Y, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS X -5 REMARK 465 HIS X -4 REMARK 465 HIS X -3 REMARK 465 GLU X 129 REMARK 465 ARG X 130 REMARK 465 GLY X 131 REMARK 465 SER X 132 REMARK 465 GLY X 133 REMARK 465 GLY X 134 REMARK 465 PHE X 135 REMARK 465 GLY X 136 REMARK 465 SER X 137 REMARK 465 THR X 138 REMARK 465 GLY X 139 REMARK 465 LYS X 140 REMARK 465 ASN X 141 REMARK 465 HIS Y -5 REMARK 465 HIS Y -4 REMARK 465 HIS Y -3 REMARK 465 HIS Y -2 REMARK 465 HIS Y -1 REMARK 465 ASP Y 127 REMARK 465 THR Y 128 REMARK 465 GLU Y 129 REMARK 465 ARG Y 130 REMARK 465 GLY Y 131 REMARK 465 SER Y 132 REMARK 465 GLY Y 133 REMARK 465 GLY Y 134 REMARK 465 PHE Y 135 REMARK 465 GLY Y 136 REMARK 465 SER Y 137 REMARK 465 THR Y 138 REMARK 465 GLY Y 139 REMARK 465 LYS Y 140 REMARK 465 ASN Y 141 REMARK 465 ASP Z 127 REMARK 465 THR Z 128 REMARK 465 GLU Z 129 REMARK 465 ARG Z 130 REMARK 465 GLY Z 131 REMARK 465 SER Z 132 REMARK 465 GLY Z 133 REMARK 465 GLY Z 134 REMARK 465 PHE Z 135 REMARK 465 GLY Z 136 REMARK 465 SER Z 137 REMARK 465 THR Z 138 REMARK 465 GLY Z 139 REMARK 465 LYS Z 140 REMARK 465 ASN Z 141 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL Y 122 CG1 CG2 REMARK 470 VAL Z 122 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP X 72 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP X 79 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP X 127 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP Y 32 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP Y 72 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP Z 32 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP Z 72 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP Z 79 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA X 75 -124.64 44.84 REMARK 500 TYR X 116 75.03 -118.52 REMARK 500 ALA Y 75 -124.46 51.14 REMARK 500 ALA Z 75 -120.20 47.41 REMARK 500 TYR Z 116 69.65 -117.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH X 228 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH Y 217 DISTANCE = 5.75 ANGSTROMS REMARK 525 HOH Y 220 DISTANCE = 5.38 ANGSTROMS REMARK 525 HOH Y 248 DISTANCE = 7.53 ANGSTROMS REMARK 525 HOH Y 249 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH Y 250 DISTANCE = 5.58 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Q5H RELATED DB: PDB REMARK 900 HUMAN DUTP PYROPHOSPHATASE COMPLEXED WITH DUDP DBREF 1Q5U X 1 141 UNP P33316 DUT_HUMAN 24 164 DBREF 1Q5U Y 1 141 UNP P33316 DUT_HUMAN 24 164 DBREF 1Q5U Z 1 141 UNP P33316 DUT_HUMAN 24 164 SEQADV 1Q5U HIS X -5 UNP P33316 EXPRESSION TAG SEQADV 1Q5U HIS X -4 UNP P33316 EXPRESSION TAG SEQADV 1Q5U HIS X -3 UNP P33316 EXPRESSION TAG SEQADV 1Q5U HIS X -2 UNP P33316 EXPRESSION TAG SEQADV 1Q5U HIS X -1 UNP P33316 EXPRESSION TAG SEQADV 1Q5U HIS X 0 UNP P33316 EXPRESSION TAG SEQADV 1Q5U HIS Y -5 UNP P33316 EXPRESSION TAG SEQADV 1Q5U HIS Y -4 UNP P33316 EXPRESSION TAG SEQADV 1Q5U HIS Y -3 UNP P33316 EXPRESSION TAG SEQADV 1Q5U HIS Y -2 UNP P33316 EXPRESSION TAG SEQADV 1Q5U HIS Y -1 UNP P33316 EXPRESSION TAG SEQADV 1Q5U HIS Y 0 UNP P33316 EXPRESSION TAG SEQADV 1Q5U HIS Z -5 UNP P33316 EXPRESSION TAG SEQADV 1Q5U HIS Z -4 UNP P33316 EXPRESSION TAG SEQADV 1Q5U HIS Z -3 UNP P33316 EXPRESSION TAG SEQADV 1Q5U HIS Z -2 UNP P33316 EXPRESSION TAG SEQADV 1Q5U HIS Z -1 UNP P33316 EXPRESSION TAG SEQADV 1Q5U HIS Z 0 UNP P33316 EXPRESSION TAG SEQRES 1 X 147 HIS HIS HIS HIS HIS HIS MET GLN LEU ARG PHE ALA ARG SEQRES 2 X 147 LEU SER GLU HIS ALA THR ALA PRO THR ARG GLY SER ALA SEQRES 3 X 147 ARG ALA ALA GLY TYR ASP LEU TYR SER ALA TYR ASP TYR SEQRES 4 X 147 THR ILE PRO PRO MET GLU LYS ALA VAL VAL LYS THR ASP SEQRES 5 X 147 ILE GLN ILE ALA LEU PRO SER GLY CYS TYR GLY ARG VAL SEQRES 6 X 147 ALA PRO ARG SER GLY LEU ALA ALA LYS HIS PHE ILE ASP SEQRES 7 X 147 VAL GLY ALA GLY VAL ILE ASP GLU ASP TYR ARG GLY ASN SEQRES 8 X 147 VAL GLY VAL VAL LEU PHE ASN PHE GLY LYS GLU LYS PHE SEQRES 9 X 147 GLU VAL LYS LYS GLY ASP ARG ILE ALA GLN LEU ILE CYS SEQRES 10 X 147 GLU ARG ILE PHE TYR PRO GLU ILE GLU GLU VAL GLN ALA SEQRES 11 X 147 LEU ASP ASP THR GLU ARG GLY SER GLY GLY PHE GLY SER SEQRES 12 X 147 THR GLY LYS ASN SEQRES 1 Y 147 HIS HIS HIS HIS HIS HIS MET GLN LEU ARG PHE ALA ARG SEQRES 2 Y 147 LEU SER GLU HIS ALA THR ALA PRO THR ARG GLY SER ALA SEQRES 3 Y 147 ARG ALA ALA GLY TYR ASP LEU TYR SER ALA TYR ASP TYR SEQRES 4 Y 147 THR ILE PRO PRO MET GLU LYS ALA VAL VAL LYS THR ASP SEQRES 5 Y 147 ILE GLN ILE ALA LEU PRO SER GLY CYS TYR GLY ARG VAL SEQRES 6 Y 147 ALA PRO ARG SER GLY LEU ALA ALA LYS HIS PHE ILE ASP SEQRES 7 Y 147 VAL GLY ALA GLY VAL ILE ASP GLU ASP TYR ARG GLY ASN SEQRES 8 Y 147 VAL GLY VAL VAL LEU PHE ASN PHE GLY LYS GLU LYS PHE SEQRES 9 Y 147 GLU VAL LYS LYS GLY ASP ARG ILE ALA GLN LEU ILE CYS SEQRES 10 Y 147 GLU ARG ILE PHE TYR PRO GLU ILE GLU GLU VAL GLN ALA SEQRES 11 Y 147 LEU ASP ASP THR GLU ARG GLY SER GLY GLY PHE GLY SER SEQRES 12 Y 147 THR GLY LYS ASN SEQRES 1 Z 147 HIS HIS HIS HIS HIS HIS MET GLN LEU ARG PHE ALA ARG SEQRES 2 Z 147 LEU SER GLU HIS ALA THR ALA PRO THR ARG GLY SER ALA SEQRES 3 Z 147 ARG ALA ALA GLY TYR ASP LEU TYR SER ALA TYR ASP TYR SEQRES 4 Z 147 THR ILE PRO PRO MET GLU LYS ALA VAL VAL LYS THR ASP SEQRES 5 Z 147 ILE GLN ILE ALA LEU PRO SER GLY CYS TYR GLY ARG VAL SEQRES 6 Z 147 ALA PRO ARG SER GLY LEU ALA ALA LYS HIS PHE ILE ASP SEQRES 7 Z 147 VAL GLY ALA GLY VAL ILE ASP GLU ASP TYR ARG GLY ASN SEQRES 8 Z 147 VAL GLY VAL VAL LEU PHE ASN PHE GLY LYS GLU LYS PHE SEQRES 9 Z 147 GLU VAL LYS LYS GLY ASP ARG ILE ALA GLN LEU ILE CYS SEQRES 10 Z 147 GLU ARG ILE PHE TYR PRO GLU ILE GLU GLU VAL GLN ALA SEQRES 11 Z 147 LEU ASP ASP THR GLU ARG GLY SER GLY GLY PHE GLY SER SEQRES 12 Z 147 THR GLY LYS ASN FORMUL 4 HOH *304(H2 O) HELIX 1 1 ARG X 62 PHE X 70 1 9 HELIX 2 2 ARG Y 62 PHE Y 70 1 9 HELIX 3 3 ARG Z 62 PHE Z 70 1 9 SHEET 1 A 3 ILE X 47 ALA X 50 0 SHEET 2 A 3 GLN X 2 ARG X 7 -1 N ARG X 4 O ALA X 50 SHEET 3 A 3 GLU Y 118 GLU Y 121 1 O GLU Y 118 N LEU X 3 SHEET 1 B 4 TYR X 25 TYR X 28 0 SHEET 2 B 4 ARG X 105 ARG X 113 -1 O LEU X 109 N TYR X 25 SHEET 3 B 4 CYS X 55 ALA X 60 -1 N ALA X 60 O GLN X 108 SHEET 4 B 4 VAL X 77 ILE X 78 -1 O ILE X 78 N GLY X 57 SHEET 1 C 2 TYR X 33 ILE X 35 0 SHEET 2 C 2 PHE X 98 VAL X 100 -1 O VAL X 100 N TYR X 33 SHEET 1 D 3 GLU X 39 LYS X 44 0 SHEET 2 D 3 GLY X 87 ASN X 92 -1 O VAL X 88 N VAL X 43 SHEET 3 D 3 ILE X 71 GLY X 74 -1 N ASP X 72 O PHE X 91 SHEET 1 E 3 ILE X 119 GLU X 121 0 SHEET 2 E 3 LEU Z 3 ARG Z 7 1 O LEU Z 3 N GLU X 120 SHEET 3 E 3 ILE Z 47 ALA Z 50 -1 O ALA Z 50 N ARG Z 4 SHEET 1 F 3 ILE Y 47 ALA Y 50 0 SHEET 2 F 3 LEU Y 3 ARG Y 7 -1 N ARG Y 4 O ALA Y 50 SHEET 3 F 3 ILE Z 119 GLU Z 121 1 O GLU Z 120 N LEU Y 3 SHEET 1 G 4 GLY Y 24 TYR Y 28 0 SHEET 2 G 4 ARG Y 105 ARG Y 113 -1 O LEU Y 109 N TYR Y 25 SHEET 3 G 4 CYS Y 55 ALA Y 60 -1 N ALA Y 60 O GLN Y 108 SHEET 4 G 4 VAL Y 77 ILE Y 78 -1 O ILE Y 78 N GLY Y 57 SHEET 1 H 2 TYR Y 33 ILE Y 35 0 SHEET 2 H 2 PHE Y 98 VAL Y 100 -1 O VAL Y 100 N TYR Y 33 SHEET 1 I 3 GLU Y 39 LYS Y 44 0 SHEET 2 I 3 GLY Y 87 ASN Y 92 -1 O VAL Y 88 N VAL Y 43 SHEET 3 I 3 ILE Y 71 GLY Y 74 -1 N ASP Y 72 O PHE Y 91 SHEET 1 J 4 TYR Z 25 TYR Z 28 0 SHEET 2 J 4 ARG Z 105 ARG Z 113 -1 O LEU Z 109 N TYR Z 25 SHEET 3 J 4 CYS Z 55 ALA Z 60 -1 N ALA Z 60 O GLN Z 108 SHEET 4 J 4 VAL Z 77 ILE Z 78 -1 O ILE Z 78 N GLY Z 57 SHEET 1 K 2 TYR Z 33 ILE Z 35 0 SHEET 2 K 2 PHE Z 98 VAL Z 100 -1 O VAL Z 100 N TYR Z 33 SHEET 1 L 3 GLU Z 39 LYS Z 44 0 SHEET 2 L 3 GLY Z 87 ASN Z 92 -1 O VAL Z 88 N VAL Z 43 SHEET 3 L 3 ILE Z 71 GLY Z 74 -1 N ASP Z 72 O PHE Z 91 CRYST1 72.991 110.666 52.954 90.00 90.00 90.00 P 21 21 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013700 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009036 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018884 0.00000 MASTER 425 0 0 3 36 0 0 6 0 0 0 36 END