HEADER TRANSFERASE 16-JUL-03 1Q0J TITLE ROTATIONAL-ECHO DOUBLE-RESONANCE NMR-RESTRAINED REFINEMENT TITLE 2 OF THE X-RAY DETERMINED MODEL (1G6S) OF THE TERNARY TITLE 3 COMPLEX OF 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE SYNTHASE, EPSP COMPND 5 SYNTHASE, EPSPS; COMPND 6 EC: 2.5.1.19; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_COMMON: BACTERIA; SOURCE 4 GENE: AROA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_COMMON: BACTERIA; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: W3110, W3110TRP A33, OR SOURCE 8 AB3608(ATTC #23790); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMIDS FEATURING A RECA SOURCE 10 PROMOTER WITH G10-L VIRAL RIBOSOME BINDING SITE; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMON5537, AND DERIVATIVES SOURCE 12 THEREOF CREATED BY SITE-DIRECTED MUTAGENESIS: PEPSPSW289Q SOURCE 13 AND PEPSPSF172W_W289Q KEYWDS REDOR, SOLID-STATE NMR STRUCTURE, MOLECULAR MODELING EXPDTA THEORETICAL MODEL AUTHOR L.M.MCDOWELL,B.POLIKS,D.R.STUDELSKA,R.D.O'CONNOR,D.D.BEUSEN REVDAT 2 13-APR-04 1Q0J 1 REMARK REVDAT 1 09-MAR-04 1Q0J 0 JRNL AUTH L.M.MCDOWELL,B.POLIKS,D.R.STUDELSKA,R.D.O'CONNOR, JRNL AUTH 2 D.D.BEUSEN,J.SCHAEFER JRNL TITL ROTATIONAL-ECHO DOUBLE-RESONANCE NMR-RESTRAINED JRNL TITL 2 MODEL OF THE TERNARY COMPLEX OF JRNL TITL 3 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE SYNTHASE. JRNL REF J.BIOMOL.NMR V. 28 11 2004 JRNL REFN ASTM JBNME9 NE ISSN 0925-2738 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.SCHONBRUNN,S.ESCHENBURG,W.A.SHUTTLEWORTH, REMARK 1 AUTH 2 J.V.SCHLOSS,N.ARMHEIN,J.N.EVANS,W.KABSCH REMARK 1 TITL INTERACTION OF THE HERBICIDE GLYPHOSATE WITH ITS REMARK 1 TITL 2 TARGET ENZYME 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE REMARK 1 TITL 3 SYNTHASE IN ATOMIC DETAIL REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 98 1376 2001 REMARK 1 REFN ASTM PNASA6 US ISSN 0027-8424 REMARK 1 REFERENCE 2 REMARK 1 AUTH L.M.MCDOWELL,C.A.KLUG,D.D.BEUSEN,J.SCHAEFER REMARK 1 TITL LIGAND GEOMETRY OF THE TERNARY COMPLEX OF REMARK 1 TITL 2 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE SYNTHASE FROM REMARK 1 TITL 3 ROTATIONAL-ECHO DOUBLE-RESONANCE NMR REMARK 1 REF BIOCHEMISTRY V. 35 5395 1996 REMARK 1 REFN ASTM BICHAW US ISSN 0006-2960 REMARK 1 REFERENCE 3 REMARK 1 AUTH L.M.MCDOWELL,A.SCHMIDT,E.R.COHEN,D.R.STUDELSKA, REMARK 1 AUTH 2 J.SCHAEFER REMARK 1 TITL STRUCTURAL CONSTRAINTS ON THE TERNARY COMPLEX OF REMARK 1 TITL 2 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE SYNTHASE FROM REMARK 1 TITL 3 ROTATIONAL-ECHO DOUBLE-RESONANCE NMR REMARK 1 REF J.MOL.BIOL. V. 256 160 1996 REMARK 1 REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REFERENCE 4 REMARK 1 AUTH D.R.STUDELSKA,C.A.KLUG,D.D.BEUSEN,L.M.MCDOWELL, REMARK 1 AUTH 2 J.SCHAEFER REMARK 1 TITL LONG-RANGE DISTANCE MEASUREMENTS OF PROTEIN REMARK 1 TITL 2 BINDING SITES BY ROTATIONAL-ECHO DOUBLE-RESONANCE REMARK 1 TITL 3 NMR REMARK 1 REF J.AM.CHEM.SOC. V. 118 5476 1996 REMARK 1 REFN ASTM JACSAT US ISSN 0002-7863 REMARK 1 REFERENCE 5 REMARK 1 AUTH W.C.STALLINGS,S.S.ABDEL-MEGUID,L.W.LIM,H.S.SHIEH, REMARK 1 AUTH 2 H.E.DAYRINGER,N.K.LEIMGRUBER,R.A.STEGEMAN, REMARK 1 AUTH 3 K.S.ANDERSON,J.A.SIKORSKI,S.R.PADGETTE,G.M.KISHORE REMARK 1 TITL STRUCTURE AND TOPOLOGICAL SYMMETRY OF THE REMARK 1 TITL 2 GLYPHOSATE TARGET REMARK 1 TITL 3 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE SYNTHASE: A REMARK 1 TITL 4 DISTINCTIVE PROTEIN FOLD REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 88 5046 1991 REMARK 1 REFN ASTM PNASA6 US ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DISCOVER 3 REMARK 3 AUTHORS : ACCELRYS INC. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Q0J COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-2003. REMARK 100 THE RCSB ID CODE IS RCSB019763. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: MODEL OF THE TERNARY COMPLEX OF EPSPS-SYNTHASE WITH S3P REMARK 220 AND GPJ WAS BUILT USING REDOR DETERMINED DISTANCE REMARK 220 RESTRAINTS BETWEEN LABELED NUCLEI (31P, 15N AND 13C) OF REMARK 220 THE LIGANDS AND 15N/2H OF PROTEIN (ARGININES AND REMARK 220 LYSINES)/HISTIDINES. THE X-RAY STRUCTURE, 1G6S (WITH PHE REMARK 220 172 REPLACED BY TRP 172, F172W), WAS THE STARTING REMARK 220 STRUCTURE FOR REFINING THE MODEL OF THE TERNARY COMPLEX. REMARK 220 USING THE SOFTWARE OF ACCELRYS INC., SAN DIEGO, THE 1G6S REMARK 220 STRUCTURE WAS MINIMIZED WITH REDOR RESTRAINTS. CVFF WAS REMARK 220 THEAPPLIED FORCEFIELD. THE DETAILS OF THE MODELING AND REMARK 220 COMPARISONS OF THIS MODEL WITH THE ONE BUILT STARTING REMARK 220 FROM THE OPEN ENZYME COORDINATES (OBTAINED FROM REMARK 220 MONSANTO) CAN BE FOUND IN THE PRIMARY LITERATURE REMARK 220 CITATION OF THE DEPOSITED COORDINATES. REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Q0I RELATED DB: PDB REMARK 900 ROTATIONAL-ECHO DOUBLE-RESONANCE NMR-RESTRAINED MODEL OF REMARK 900 THE SAME COMPLEX WITH OPEN STRUCTURE COORDINATES OBTAINED REMARK 900 FROM MONSANTO USED TO START MODEL BUILDING REMARK 900 RELATED ID: 1G6S RELATED DB: PDB REMARK 900 X-RAY DIFFRACTION STRUCTURE WITH 1.5 A RESOLUTION OF THE REMARK 900 SAME PROTEIN COMPLEXED WITH GPJ AND S3P REMARK 900 RELATED ID: 1G6T RELATED DB: PDB REMARK 900 X-RAY DIFFRACTION STRUCTURE WITH 1.6 A RESOLUTION OF THE REMARK 900 SAME PROTEIN COMPLEXED WITH PO4 AND S3P REMARK 900 RELATED ID: 1EPS RELATED DB: PDB REMARK 900 X-RAY DIFFRACTION STRUCTURE WITH 3 A RESOLUTION OF THE SAME REMARK 900 PROTEIN - CA ATOMS ONLY DBREF 1Q0J A 1 427 UNP P07638 AROA_ECOLI 1 427 SEQADV 1Q0J TRP A 172 UNP P07638 PHE 172 ENGINEERED SEQRES 1 A 427 MET GLU SER LEU THR LEU GLN PRO ILE ALA ARG VAL ASP SEQRES 2 A 427 GLY THR ILE ASN LEU PRO GLY SER LYS SER VAL SER ASN SEQRES 3 A 427 ARG ALA LEU LEU LEU ALA ALA LEU ALA HIS GLY LYS THR SEQRES 4 A 427 VAL LEU THR ASN LEU LEU ASP SER ASP ASP VAL ARG HIS SEQRES 5 A 427 MET LEU ASN ALA LEU THR ALA LEU GLY VAL SER TYR THR SEQRES 6 A 427 LEU SER ALA ASP ARG THR ARG CYS GLU ILE ILE GLY ASN SEQRES 7 A 427 GLY GLY PRO LEU HIS ALA GLU GLY ALA LEU GLU LEU PHE SEQRES 8 A 427 LEU GLY ASN ALA GLY THR ALA MET ARG PRO LEU ALA ALA SEQRES 9 A 427 ALA LEU CYS LEU GLY SER ASN ASP ILE VAL LEU THR GLY SEQRES 10 A 427 GLU PRO ARG MET LYS GLU ARG PRO ILE GLY HIS LEU VAL SEQRES 11 A 427 ASP ALA LEU ARG LEU GLY GLY ALA LYS ILE THR TYR LEU SEQRES 12 A 427 GLU GLN GLU ASN TYR PRO PRO LEU ARG LEU GLN GLY GLY SEQRES 13 A 427 PHE THR GLY GLY ASN VAL ASP VAL ASP GLY SER VAL SER SEQRES 14 A 427 SER GLN TRP LEU THR ALA LEU LEU MET THR ALA PRO LEU SEQRES 15 A 427 ALA PRO GLU ASP THR VAL ILE ARG ILE LYS GLY ASP LEU SEQRES 16 A 427 VAL SER LYS PRO TYR ILE ASP ILE THR LEU ASN LEU MET SEQRES 17 A 427 LYS THR PHE GLY VAL GLU ILE GLU ASN GLN HIS TYR GLN SEQRES 18 A 427 GLN PHE VAL VAL LYS GLY GLY GLN SER TYR GLN SER PRO SEQRES 19 A 427 GLY THR TYR LEU VAL GLU GLY ASP ALA SER SER ALA SER SEQRES 20 A 427 TYR PHE LEU ALA ALA ALA ALA ILE LYS GLY GLY THR VAL SEQRES 21 A 427 LYS VAL THR GLY ILE GLY ARG ASN SER MET GLN GLY ASP SEQRES 22 A 427 ILE ARG PHE ALA ASP VAL LEU GLU LYS MET GLY ALA THR SEQRES 23 A 427 ILE CYS TRP GLY ASP ASP TYR ILE SER CYS THR ARG GLY SEQRES 24 A 427 GLU LEU ASN ALA ILE ASP MET ASP MET ASN HIS ILE PRO SEQRES 25 A 427 ASP ALA ALA MET THR ILE ALA THR ALA ALA LEU PHE ALA SEQRES 26 A 427 LYS GLY THR THR THR LEU ARG ASN ILE TYR ASN TRP ARG SEQRES 27 A 427 VAL LYS GLU THR ASP ARG LEU PHE ALA MET ALA THR GLU SEQRES 28 A 427 LEU ARG LYS VAL GLY ALA GLU VAL GLU GLU GLY HIS ASP SEQRES 29 A 427 TYR ILE ARG ILE THR PRO PRO GLU LYS LEU ASN PHE ALA SEQRES 30 A 427 GLU ILE ALA THR TYR ASN ASP HIS ARG MET ALA MET CYS SEQRES 31 A 427 PHE SER LEU VAL ALA LEU SER ASP THR PRO VAL THR ILE SEQRES 32 A 427 LEU ASP PRO LYS CYS THR ALA LYS THR PHE PRO ASP TYR SEQRES 33 A 427 PHE GLU GLN LEU ALA ARG ILE SER GLN ALA ALA HET S3P 601 25 HET GPJ 701 16 HET FMT 801 5 HET FMT 802 5 HET FMT 803 5 HET FMT 804 5 HET FMT 805 5 HET FMT 806 5 HET FMT 807 5 HET FMT 808 5 HET FMT 809 5 HET FMT 810 5 HETNAM S3P SHIKIMATE-3-PHOSPHATE HETNAM GPJ GLYPHOSATE HETNAM FMT FORMIC ACID FORMUL 2 S3P C7 H11 O8 P FORMUL 3 GPJ C3 H9 N O5 P 1+ FORMUL 4 FMT 10(C H2 O2) FORMUL 14 HOH *599(H2 O1) HELIX 1 1 SER A 21 ALA A 35 1 15 HELIX 2 2 SER A 47 LEU A 60 1 14 HELIX 3 3 ALA A 95 LEU A 106 1 12 HELIX 4 4 GLU A 118 ARG A 124 1 7 HELIX 5 5 ILE A 126 GLY A 136 1 11 HELIX 6 6 SER A 169 ALA A 180 1 12 HELIX 7 7 PRO A 181 ALA A 183 5 3 HELIX 8 8 SER A 197 PHE A 211 1 15 HELIX 9 9 ASP A 242 GLY A 257 1 16 HELIX 10 10 GLY A 272 ILE A 274 5 3 HELIX 11 11 ARG A 275 GLY A 284 1 10 HELIX 12 12 ILE A 311 ALA A 325 1 15 HELIX 13 13 ASP A 343 GLY A 356 1 14 HELIX 14 14 ASP A 384 LEU A 393 1 10 HELIX 15 15 PRO A 406 THR A 412 5 7 HELIX 16 16 ASP A 415 ILE A 423 1 9 SHEET 1 A 3 SER A 3 LEU A 6 0 SHEET 2 A 3 VAL A 401 LEU A 404 -1 O ILE A 403 N LEU A 4 SHEET 3 A 3 GLU A 378 ILE A 379 1 N ILE A 379 O THR A 402 SHEET 1 B 2 ARG A 11 VAL A 12 0 SHEET 2 B 2 SER A 424 GLN A 425 -1 O GLN A 425 N ARG A 11 SHEET 1 C 4 GLY A 14 ILE A 16 0 SHEET 2 C 4 THR A 259 THR A 263 1 O LYS A 261 N ILE A 16 SHEET 3 C 4 TYR A 293 THR A 297 -1 O ILE A 294 N VAL A 262 SHEET 4 C 4 THR A 286 TRP A 289 -1 N THR A 286 O THR A 297 SHEET 1 D 4 TYR A 64 LEU A 66 0 SHEET 2 D 4 CYS A 73 ILE A 76 -1 O GLU A 74 N THR A 65 SHEET 3 D 4 LYS A 38 THR A 42 -1 N LEU A 41 O CYS A 73 SHEET 4 D 4 THR A 236 LEU A 238 1 O TYR A 237 N VAL A 40 SHEET 1 E 4 LEU A 88 PHE A 91 0 SHEET 2 E 4 ILE A 113 THR A 116 1 O VAL A 114 N LEU A 90 SHEET 3 E 4 LEU A 151 LEU A 153 -1 O LEU A 153 N ILE A 113 SHEET 4 E 4 ILE A 140 TYR A 142 -1 N THR A 141 O ARG A 152 SHEET 1 F 4 GLY A 160 VAL A 164 0 SHEET 2 F 4 THR A 187 ILE A 191 1 O VAL A 188 N GLY A 160 SHEET 3 F 4 GLN A 222 VAL A 225 -1 O PHE A 223 N ILE A 189 SHEET 4 F 4 GLU A 216 GLN A 218 -1 N GLN A 218 O GLN A 222 SHEET 1 G 4 ASP A 305 ASP A 307 0 SHEET 2 G 4 THR A 329 ARG A 332 1 O ARG A 332 N MET A 306 SHEET 3 G 4 ILE A 366 THR A 369 -1 O ILE A 368 N THR A 329 SHEET 4 G 4 GLU A 358 GLU A 361 -1 N GLU A 358 O THR A 369 CISPEP 1 PRO A 149 PRO A 150 0 11.69 CISPEP 2 GLY A 257 GLY A 258 0 -4.81 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 94 0 12 16 25 0 0 6 0 0 0 33 END