HEADER LYASE 02-JUL-03 1PWX TITLE CRYSTAL STRUCTURE OF THE HALOALCOHOL DEHALOGENASE HHEC COMPLEXED WITH TITLE 2 BROMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HALOHYDRIN DEHALOGENASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS; SOURCE 3 ORGANISM_TAXID: 358; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEF KEYWDS HALOALCOHOL DEHALOGENASE, HALOHYDRIN DEHALOGENASE, HALOHYDRIN KEYWDS 2 HYDROGEN-HALIDE LYASE, SDR FAMILY, SHORT-CHAIN KEYWDS 3 DEHYDROGENASE/REDUCTASE, ROSSMANN FOLD, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR R.M.DE JONG,J.J.W.TIESINGA,H.J.ROZEBOOM,K.H.KALK,L.TANG,D.B.JANSSEN, AUTHOR 2 B.W.DIJKSTRA REVDAT 3 16-FEB-11 1PWX 1 DBREF REVDAT 2 24-FEB-09 1PWX 1 VERSN REVDAT 1 07-OCT-03 1PWX 0 JRNL AUTH R.M.DE JONG,J.J.W.TIESINGA,H.J.ROZEBOOM,K.H.KALK,L.TANG, JRNL AUTH 2 D.B.JANSSEN,B.W.DIJKSTRA JRNL TITL STRUCTURE AND MECHANISM OF A BACTERIAL HALOALCOHOL JRNL TITL 2 DEHALOGENASE: A NEW VARIATION OF THE SHORT-CHAIN JRNL TITL 3 DEHYDROGENASE/REDUCTASE FOLD WITHOUT AN NAD(P)H BINDING SITE JRNL REF EMBO J. V. 22 4933 2003 JRNL REFN ISSN 0261-4189 JRNL PMID 14517233 JRNL DOI 10.1093/EMBOJ/CDG479 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNX, CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN,BRUNGER,ADAMS, REMARK 3 : CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG, REMARK 3 : KUSZEWSKI,NILGES,PANNU,READ,RICE, REMARK 3 : SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2198381.760 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 111143 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.313 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.800 REMARK 3 FREE R VALUE TEST SET COUNT : 8691 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 16863 REMARK 3 BIN R VALUE (WORKING SET) : 0.3290 REMARK 3 BIN FREE R VALUE : 0.4130 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 1371 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.013 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7668 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 525 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.18000 REMARK 3 B22 (A**2) : -0.18000 REMARK 3 B33 (A**2) : 0.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.33 REMARK 3 LOW RESOLUTION CUTOFF (A) : 6.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.41 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.50 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.12 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : GROUP REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 52.70 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CRYSTAL IS A PERFECT TWIN: R/R FREE ARE REMARK 3 TWINNED-R/R FREE REMARK 4 REMARK 4 1PWX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-03. REMARK 100 THE RCSB ID CODE IS RCSB019651. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : 0.06600 REMARK 200 FOR THE DATA SET : 23.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 1.05 REMARK 200 R MERGE FOR SHELL (I) : 0.15200 REMARK 200 R SYM FOR SHELL (I) : 0.16400 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: INITIAL MODEL FROM A LOW RESOLUTION MAD DATASET, REMARK 200 WHICH HAS NOT BEEN REFINED REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, BIS-TRIS BUFFER, PH REMARK 280 6.9, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.70650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.05975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.35325 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS ONE BIOLOGICAL FUNCTIONAL REMARK 300 TETRAMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -126.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 254 REMARK 465 MET B 1 REMARK 465 GLU B 254 REMARK 465 MET C 1 REMARK 465 GLU C 254 REMARK 465 MET D 1 REMARK 465 GLU D 254 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 23 CG CD OE1 OE2 REMARK 470 GLU A 33 CG CD OE1 OE2 REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 LYS A 38 CG CD CE NZ REMARK 470 ASP A 39 CG OD1 OD2 REMARK 470 GLU A 46 CG CD OE1 OE2 REMARK 470 GLU A 61 CG CD OE1 OE2 REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 GLU A 95 CG CD OE1 OE2 REMARK 470 LYS A 215 CG CD CE NZ REMARK 470 GLU B 33 CG CD OE1 OE2 REMARK 470 LYS B 38 CG CD CE NZ REMARK 470 ASP B 39 CG OD1 OD2 REMARK 470 GLU B 46 CG CD OE1 OE2 REMARK 470 GLU B 64 CG CD OE1 OE2 REMARK 470 GLU B 95 CG CD OE1 OE2 REMARK 470 LYS B 121 CG CD CE NZ REMARK 470 LYS B 203 CG CD CE NZ REMARK 470 LYS B 215 CG CD CE NZ REMARK 470 GLU C 33 CG CD OE1 OE2 REMARK 470 LYS C 36 CG CD CE NZ REMARK 470 LYS C 38 CG CD CE NZ REMARK 470 ASP C 39 CG OD1 OD2 REMARK 470 GLU C 46 CG CD OE1 OE2 REMARK 470 GLU C 64 CG CD OE1 OE2 REMARK 470 GLU C 95 CG CD OE1 OE2 REMARK 470 LYS C 121 CG CD CE NZ REMARK 470 GLU C 165 CG CD OE1 OE2 REMARK 470 LYS C 203 CG CD CE NZ REMARK 470 GLU D 23 CG CD OE1 OE2 REMARK 470 GLU D 33 CG CD OE1 OE2 REMARK 470 LYS D 38 CG CD CE NZ REMARK 470 ASP D 39 CG OD1 OD2 REMARK 470 GLU D 46 CG CD OE1 OE2 REMARK 470 GLU D 64 CG CD OE1 OE2 REMARK 470 GLU D 95 CG CD OE1 OE2 REMARK 470 GLU D 165 CG CD OE1 OE2 REMARK 470 LYS D 215 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 12 -114.37 40.58 REMARK 500 SER A 17 -71.44 -59.61 REMARK 500 PHE A 82 148.28 -173.02 REMARK 500 ALA A 83 75.87 -114.31 REMARK 500 PRO A 84 -125.01 -57.96 REMARK 500 GLU A 85 156.19 176.21 REMARK 500 ILE A 89 -52.33 -26.34 REMARK 500 ALA A 103 -89.37 -80.97 REMARK 500 THR A 131 -123.38 -104.59 REMARK 500 LEU A 142 44.90 -171.66 REMARK 500 THR A 144 -81.64 -79.17 REMARK 500 ASN A 176 119.06 -167.62 REMARK 500 TYR A 177 41.54 70.69 REMARK 500 GLU A 181 -129.49 69.45 REMARK 500 PRO A 184 34.09 -88.69 REMARK 500 CYS A 229 66.23 -169.16 REMARK 500 THR A 233 130.40 -36.86 REMARK 500 LEU A 239 45.58 -94.12 REMARK 500 PHE B 12 -106.69 49.08 REMARK 500 PHE B 35 19.87 -62.30 REMARK 500 GLU B 40 -75.41 -76.88 REMARK 500 LEU B 41 -37.88 -37.36 REMARK 500 ALA B 45 1.07 -66.08 REMARK 500 PRO B 59 -83.18 -44.80 REMARK 500 GLN B 72 -159.12 -164.39 REMARK 500 PHE B 82 129.24 -175.14 REMARK 500 ALA B 83 107.81 -53.18 REMARK 500 PHE B 86 156.75 -32.44 REMARK 500 GLN B 87 122.74 176.30 REMARK 500 TYR B 92 -154.87 -67.61 REMARK 500 ALA B 114 -76.31 -76.59 REMARK 500 THR B 131 -107.18 -88.15 REMARK 500 SER B 132 146.39 -177.78 REMARK 500 GLU B 141 11.80 94.58 REMARK 500 LEU B 159 -9.82 -58.79 REMARK 500 TYR B 166 23.38 -77.13 REMARK 500 ASN B 167 74.76 49.69 REMARK 500 GLU B 181 -116.15 51.31 REMARK 500 TRP B 192 -26.76 -25.22 REMARK 500 CYS B 229 68.40 -150.99 REMARK 500 TYR B 231 2.86 -67.61 REMARK 500 MET B 252 108.78 -54.65 REMARK 500 ASN C 8 45.01 31.55 REMARK 500 PHE C 12 -117.38 70.30 REMARK 500 ASP C 32 134.42 171.79 REMARK 500 PHE C 35 -18.27 -45.28 REMARK 500 SER C 68 -70.62 -78.78 REMARK 500 PHE C 82 114.72 167.99 REMARK 500 PHE C 86 161.59 -47.72 REMARK 500 GLN C 87 150.07 153.79 REMARK 500 REMARK 500 THIS ENTRY HAS 78 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR D 48 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLU C 141 24.1 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 660 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH B 693 DISTANCE = 5.23 ANGSTROMS REMARK 525 HOH A 702 DISTANCE = 5.53 ANGSTROMS REMARK 525 HOH A 712 DISTANCE = 5.77 ANGSTROMS REMARK 525 HOH B 715 DISTANCE = 5.49 ANGSTROMS REMARK 525 HOH D 714 DISTANCE = 5.49 ANGSTROMS REMARK 525 HOH A 721 DISTANCE = 5.26 ANGSTROMS REMARK 525 HOH D 722 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH D 726 DISTANCE = 7.70 ANGSTROMS REMARK 525 HOH D 728 DISTANCE = 5.67 ANGSTROMS REMARK 525 HOH D 730 DISTANCE = 5.73 ANGSTROMS REMARK 525 HOH D 734 DISTANCE = 7.34 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR C 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR D 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR B 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR C 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR B 608 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PWZ RELATED DB: PDB REMARK 900 HALOALCOHOL DEHALOGENASE HHEC COMPLEXED WITH (R)-STYRENE REMARK 900 OXIDE AND CHLORIDE REMARK 900 RELATED ID: 1PX0 RELATED DB: PDB REMARK 900 HALOALCOHOL DEHALOGENASE HHEC COMPLEXED WITH THE REMARK 900 HALOALCOHOL MIMIC (R)-1-PARA-NITRO-PHENYL-2-AZIDO-ETHANOL DBREF 1PWX A 1 254 UNP Q93D82 Q93D82_RHIRD 1 254 DBREF 1PWX B 1 254 UNP Q93D82 Q93D82_RHIRD 1 254 DBREF 1PWX C 1 254 UNP Q93D82 Q93D82_RHIRD 1 254 DBREF 1PWX D 1 254 UNP Q93D82 Q93D82_RHIRD 1 254 SEQRES 1 A 254 MET SER THR ALA ILE VAL THR ASN VAL LYS HIS PHE GLY SEQRES 2 A 254 GLY MET GLY SER ALA LEU ARG LEU SER GLU ALA GLY HIS SEQRES 3 A 254 THR VAL ALA CYS HIS ASP GLU SER PHE LYS GLN LYS ASP SEQRES 4 A 254 GLU LEU GLU ALA PHE ALA GLU THR TYR PRO GLN LEU LYS SEQRES 5 A 254 PRO MET SER GLU GLN GLU PRO ALA GLU LEU ILE GLU ALA SEQRES 6 A 254 VAL THR SER ALA TYR GLY GLN VAL ASP VAL LEU VAL SER SEQRES 7 A 254 ASN ASP ILE PHE ALA PRO GLU PHE GLN PRO ILE ASP LYS SEQRES 8 A 254 TYR ALA VAL GLU ASP TYR ARG GLY ALA VAL GLU ALA LEU SEQRES 9 A 254 GLN ILE ARG PRO PHE ALA LEU VAL ASN ALA VAL ALA SER SEQRES 10 A 254 GLN MET LYS LYS ARG LYS SER GLY HIS ILE ILE PHE ILE SEQRES 11 A 254 THR SER ALA THR PRO PHE GLY PRO TRP LYS GLU LEU SER SEQRES 12 A 254 THR TYR THR SER ALA ARG ALA GLY ALA CYS THR LEU ALA SEQRES 13 A 254 ASN ALA LEU SER LYS GLU LEU GLY GLU TYR ASN ILE PRO SEQRES 14 A 254 VAL PHE ALA ILE GLY PRO ASN TYR LEU HIS SER GLU ASP SEQRES 15 A 254 SER PRO TYR PHE TYR PRO THR GLU PRO TRP LYS THR ASN SEQRES 16 A 254 PRO GLU HIS VAL ALA HIS VAL LYS LYS VAL THR ALA LEU SEQRES 17 A 254 GLN ARG LEU GLY THR GLN LYS GLU LEU GLY GLU LEU VAL SEQRES 18 A 254 ALA PHE LEU ALA SER GLY SER CYS ASP TYR LEU THR GLY SEQRES 19 A 254 GLN VAL PHE TRP LEU ALA GLY GLY PHE PRO MET ILE GLU SEQRES 20 A 254 ARG TRP PRO GLY MET PRO GLU SEQRES 1 B 254 MET SER THR ALA ILE VAL THR ASN VAL LYS HIS PHE GLY SEQRES 2 B 254 GLY MET GLY SER ALA LEU ARG LEU SER GLU ALA GLY HIS SEQRES 3 B 254 THR VAL ALA CYS HIS ASP GLU SER PHE LYS GLN LYS ASP SEQRES 4 B 254 GLU LEU GLU ALA PHE ALA GLU THR TYR PRO GLN LEU LYS SEQRES 5 B 254 PRO MET SER GLU GLN GLU PRO ALA GLU LEU ILE GLU ALA SEQRES 6 B 254 VAL THR SER ALA TYR GLY GLN VAL ASP VAL LEU VAL SER SEQRES 7 B 254 ASN ASP ILE PHE ALA PRO GLU PHE GLN PRO ILE ASP LYS SEQRES 8 B 254 TYR ALA VAL GLU ASP TYR ARG GLY ALA VAL GLU ALA LEU SEQRES 9 B 254 GLN ILE ARG PRO PHE ALA LEU VAL ASN ALA VAL ALA SER SEQRES 10 B 254 GLN MET LYS LYS ARG LYS SER GLY HIS ILE ILE PHE ILE SEQRES 11 B 254 THR SER ALA THR PRO PHE GLY PRO TRP LYS GLU LEU SER SEQRES 12 B 254 THR TYR THR SER ALA ARG ALA GLY ALA CYS THR LEU ALA SEQRES 13 B 254 ASN ALA LEU SER LYS GLU LEU GLY GLU TYR ASN ILE PRO SEQRES 14 B 254 VAL PHE ALA ILE GLY PRO ASN TYR LEU HIS SER GLU ASP SEQRES 15 B 254 SER PRO TYR PHE TYR PRO THR GLU PRO TRP LYS THR ASN SEQRES 16 B 254 PRO GLU HIS VAL ALA HIS VAL LYS LYS VAL THR ALA LEU SEQRES 17 B 254 GLN ARG LEU GLY THR GLN LYS GLU LEU GLY GLU LEU VAL SEQRES 18 B 254 ALA PHE LEU ALA SER GLY SER CYS ASP TYR LEU THR GLY SEQRES 19 B 254 GLN VAL PHE TRP LEU ALA GLY GLY PHE PRO MET ILE GLU SEQRES 20 B 254 ARG TRP PRO GLY MET PRO GLU SEQRES 1 C 254 MET SER THR ALA ILE VAL THR ASN VAL LYS HIS PHE GLY SEQRES 2 C 254 GLY MET GLY SER ALA LEU ARG LEU SER GLU ALA GLY HIS SEQRES 3 C 254 THR VAL ALA CYS HIS ASP GLU SER PHE LYS GLN LYS ASP SEQRES 4 C 254 GLU LEU GLU ALA PHE ALA GLU THR TYR PRO GLN LEU LYS SEQRES 5 C 254 PRO MET SER GLU GLN GLU PRO ALA GLU LEU ILE GLU ALA SEQRES 6 C 254 VAL THR SER ALA TYR GLY GLN VAL ASP VAL LEU VAL SER SEQRES 7 C 254 ASN ASP ILE PHE ALA PRO GLU PHE GLN PRO ILE ASP LYS SEQRES 8 C 254 TYR ALA VAL GLU ASP TYR ARG GLY ALA VAL GLU ALA LEU SEQRES 9 C 254 GLN ILE ARG PRO PHE ALA LEU VAL ASN ALA VAL ALA SER SEQRES 10 C 254 GLN MET LYS LYS ARG LYS SER GLY HIS ILE ILE PHE ILE SEQRES 11 C 254 THR SER ALA THR PRO PHE GLY PRO TRP LYS GLU LEU SER SEQRES 12 C 254 THR TYR THR SER ALA ARG ALA GLY ALA CYS THR LEU ALA SEQRES 13 C 254 ASN ALA LEU SER LYS GLU LEU GLY GLU TYR ASN ILE PRO SEQRES 14 C 254 VAL PHE ALA ILE GLY PRO ASN TYR LEU HIS SER GLU ASP SEQRES 15 C 254 SER PRO TYR PHE TYR PRO THR GLU PRO TRP LYS THR ASN SEQRES 16 C 254 PRO GLU HIS VAL ALA HIS VAL LYS LYS VAL THR ALA LEU SEQRES 17 C 254 GLN ARG LEU GLY THR GLN LYS GLU LEU GLY GLU LEU VAL SEQRES 18 C 254 ALA PHE LEU ALA SER GLY SER CYS ASP TYR LEU THR GLY SEQRES 19 C 254 GLN VAL PHE TRP LEU ALA GLY GLY PHE PRO MET ILE GLU SEQRES 20 C 254 ARG TRP PRO GLY MET PRO GLU SEQRES 1 D 254 MET SER THR ALA ILE VAL THR ASN VAL LYS HIS PHE GLY SEQRES 2 D 254 GLY MET GLY SER ALA LEU ARG LEU SER GLU ALA GLY HIS SEQRES 3 D 254 THR VAL ALA CYS HIS ASP GLU SER PHE LYS GLN LYS ASP SEQRES 4 D 254 GLU LEU GLU ALA PHE ALA GLU THR TYR PRO GLN LEU LYS SEQRES 5 D 254 PRO MET SER GLU GLN GLU PRO ALA GLU LEU ILE GLU ALA SEQRES 6 D 254 VAL THR SER ALA TYR GLY GLN VAL ASP VAL LEU VAL SER SEQRES 7 D 254 ASN ASP ILE PHE ALA PRO GLU PHE GLN PRO ILE ASP LYS SEQRES 8 D 254 TYR ALA VAL GLU ASP TYR ARG GLY ALA VAL GLU ALA LEU SEQRES 9 D 254 GLN ILE ARG PRO PHE ALA LEU VAL ASN ALA VAL ALA SER SEQRES 10 D 254 GLN MET LYS LYS ARG LYS SER GLY HIS ILE ILE PHE ILE SEQRES 11 D 254 THR SER ALA THR PRO PHE GLY PRO TRP LYS GLU LEU SER SEQRES 12 D 254 THR TYR THR SER ALA ARG ALA GLY ALA CYS THR LEU ALA SEQRES 13 D 254 ASN ALA LEU SER LYS GLU LEU GLY GLU TYR ASN ILE PRO SEQRES 14 D 254 VAL PHE ALA ILE GLY PRO ASN TYR LEU HIS SER GLU ASP SEQRES 15 D 254 SER PRO TYR PHE TYR PRO THR GLU PRO TRP LYS THR ASN SEQRES 16 D 254 PRO GLU HIS VAL ALA HIS VAL LYS LYS VAL THR ALA LEU SEQRES 17 D 254 GLN ARG LEU GLY THR GLN LYS GLU LEU GLY GLU LEU VAL SEQRES 18 D 254 ALA PHE LEU ALA SER GLY SER CYS ASP TYR LEU THR GLY SEQRES 19 D 254 GLN VAL PHE TRP LEU ALA GLY GLY PHE PRO MET ILE GLU SEQRES 20 D 254 ARG TRP PRO GLY MET PRO GLU HET BR A 601 1 HET BR C 602 1 HET BR D 603 1 HET BR B 604 1 HET BR B 605 1 HET BR A 606 1 HET BR C 607 1 HET BR B 608 1 HETNAM BR BROMIDE ION FORMUL 5 BR 8(BR 1-) FORMUL 13 HOH *525(H2 O) HELIX 1 1 GLY A 13 ALA A 24 1 12 HELIX 2 2 ASP A 32 GLN A 37 5 6 HELIX 3 3 ASP A 39 TYR A 48 1 10 HELIX 4 4 GLU A 58 GLY A 71 1 14 HELIX 5 5 PRO A 88 TYR A 92 5 5 HELIX 6 6 ALA A 93 GLN A 105 1 13 HELIX 7 7 GLN A 105 LYS A 123 1 19 HELIX 8 8 LEU A 142 GLY A 164 1 23 HELIX 9 9 GLU A 165 ASN A 167 5 3 HELIX 10 10 PRO A 188 LYS A 193 1 6 HELIX 11 11 ASN A 195 THR A 206 1 12 HELIX 12 12 THR A 213 ALA A 225 1 13 HELIX 13 13 CYS A 229 THR A 233 5 5 HELIX 14 14 GLY B 14 ALA B 24 1 11 HELIX 15 15 GLU B 33 LYS B 36 5 4 HELIX 16 16 GLN B 37 TYR B 48 1 12 HELIX 17 17 GLU B 58 TYR B 70 1 13 HELIX 18 18 PRO B 88 TYR B 92 5 5 HELIX 19 19 ALA B 93 GLN B 105 1 13 HELIX 20 20 GLN B 105 LYS B 123 1 19 HELIX 21 21 ALA B 133 GLY B 137 5 5 HELIX 22 22 LEU B 142 GLY B 164 1 23 HELIX 23 23 ASN B 195 THR B 206 1 12 HELIX 24 24 THR B 213 ALA B 225 1 13 HELIX 25 25 CYS B 229 THR B 233 5 5 HELIX 26 26 GLY C 13 ALA C 24 1 12 HELIX 27 27 ASP C 32 LYS C 36 5 5 HELIX 28 28 GLN C 37 TYR C 48 1 12 HELIX 29 29 GLU C 58 TYR C 70 1 13 HELIX 30 30 VAL C 94 LYS C 123 1 30 HELIX 31 31 ALA C 133 GLY C 137 5 5 HELIX 32 32 LEU C 142 LEU C 163 1 22 HELIX 33 33 PRO C 188 LYS C 193 1 6 HELIX 34 34 ASN C 195 THR C 206 1 12 HELIX 35 35 THR C 213 ALA C 225 1 13 HELIX 36 36 CYS C 229 THR C 233 5 5 HELIX 37 37 GLY D 13 ALA D 24 1 12 HELIX 38 38 ASP D 32 LYS D 36 5 5 HELIX 39 39 GLN D 37 TYR D 48 1 12 HELIX 40 40 GLU D 58 GLY D 71 1 14 HELIX 41 41 ALA D 93 GLN D 105 1 13 HELIX 42 42 GLN D 105 ARG D 122 1 18 HELIX 43 43 ALA D 133 GLY D 137 5 5 HELIX 44 44 LEU D 142 LEU D 163 1 22 HELIX 45 45 PRO D 188 LYS D 193 1 6 HELIX 46 46 ASN D 195 LYS D 203 1 9 HELIX 47 47 THR D 213 GLY D 227 1 15 HELIX 48 48 CYS D 229 THR D 233 5 5 SHEET 1 A 7 LEU A 51 PRO A 53 0 SHEET 2 A 7 THR A 27 HIS A 31 1 N VAL A 28 O LYS A 52 SHEET 3 A 7 THR A 3 THR A 7 1 N ALA A 4 O ALA A 29 SHEET 4 A 7 VAL A 75 SER A 78 1 O VAL A 77 N ILE A 5 SHEET 5 A 7 HIS A 126 ILE A 130 1 O ILE A 128 N LEU A 76 SHEET 6 A 7 VAL A 170 PRO A 175 1 O PHE A 171 N ILE A 127 SHEET 7 A 7 VAL A 236 LEU A 239 1 O PHE A 237 N GLY A 174 SHEET 1 B 7 LYS B 52 MET B 54 0 SHEET 2 B 7 THR B 27 HIS B 31 1 N CYS B 30 O LYS B 52 SHEET 3 B 7 THR B 3 THR B 7 1 N ALA B 4 O THR B 27 SHEET 4 B 7 VAL B 75 ASN B 79 1 O VAL B 75 N ILE B 5 SHEET 5 B 7 HIS B 126 ILE B 130 1 O ILE B 128 N LEU B 76 SHEET 6 B 7 VAL B 170 PRO B 175 1 O ILE B 173 N PHE B 129 SHEET 7 B 7 VAL B 236 LEU B 239 1 O PHE B 237 N GLY B 174 SHEET 1 C 2 HIS B 179 GLU B 181 0 SHEET 2 C 2 TYR B 187 PRO B 188 1 O TYR B 187 N GLU B 181 SHEET 1 D 7 LYS C 52 PRO C 53 0 SHEET 2 D 7 THR C 27 CYS C 30 1 N CYS C 30 O LYS C 52 SHEET 3 D 7 THR C 3 VAL C 6 1 N ALA C 4 O ALA C 29 SHEET 4 D 7 VAL C 75 ASN C 79 1 O VAL C 75 N ILE C 5 SHEET 5 D 7 HIS C 126 ILE C 130 1 O HIS C 126 N LEU C 76 SHEET 6 D 7 VAL C 170 PRO C 175 1 O PHE C 171 N PHE C 129 SHEET 7 D 7 VAL C 236 LEU C 239 1 O PHE C 237 N ALA C 172 SHEET 1 E 7 LEU D 51 PRO D 53 0 SHEET 2 E 7 THR D 27 CYS D 30 1 N VAL D 28 O LYS D 52 SHEET 3 E 7 THR D 3 VAL D 6 1 N ALA D 4 O THR D 27 SHEET 4 E 7 VAL D 75 ASN D 79 1 O VAL D 77 N ILE D 5 SHEET 5 E 7 HIS D 126 ILE D 130 1 O ILE D 128 N LEU D 76 SHEET 6 E 7 VAL D 170 PRO D 175 1 O ILE D 173 N PHE D 129 SHEET 7 E 7 VAL D 236 LEU D 239 1 O PHE D 237 N ALA D 172 CISPEP 1 TYR A 185 PHE A 186 0 1.25 CISPEP 2 GLU A 190 PRO A 191 0 0.11 CISPEP 3 PHE A 243 PRO A 244 0 -0.15 CISPEP 4 TYR B 185 PHE B 186 0 0.83 CISPEP 5 GLU B 190 PRO B 191 0 -0.06 CISPEP 6 PHE B 243 PRO B 244 0 -0.04 CISPEP 7 TYR C 185 PHE C 186 0 -1.85 CISPEP 8 GLU C 190 PRO C 191 0 0.17 CISPEP 9 PHE C 243 PRO C 244 0 -0.02 CISPEP 10 TYR D 185 PHE D 186 0 0.66 CISPEP 11 GLU D 190 PRO D 191 0 0.19 CISPEP 12 PHE D 243 PRO D 244 0 -0.11 SITE 1 AC1 5 PHE A 12 PRO A 175 ASN A 176 LEU A 178 SITE 2 AC1 5 TYR A 187 SITE 1 AC2 2 ASN C 176 TYR C 187 SITE 1 AC3 2 PHE D 12 TYR D 187 SITE 1 AC4 5 PRO B 175 ASN B 176 TYR B 177 LEU B 178 SITE 2 AC4 5 TYR B 187 SITE 1 AC5 1 SER B 2 SITE 1 AC6 5 ALA A 158 GLU A 162 GLU B 141 SER B 143 SITE 2 AC6 5 HOH B 636 SITE 1 AC7 4 HIS C 11 PHE C 12 MET C 15 HOH C 716 SITE 1 AC8 4 MET B 245 ILE B 246 LYS C 161 PRO D 138 CRYST1 103.213 103.213 117.413 90.00 90.00 90.00 P 43 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009689 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009689 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008517 0.00000 MASTER 455 0 8 48 30 0 11 6 0 0 0 80 END