HEADER HYDROLASE 27-JUN-03 1PV9 TITLE PROLIDASE FROM PYROCOCCUS FURIOSUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: XAA-PRO DIPEPTIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: X-PRO DIPEPTIDASE, PROLINE DIPEPTIDASE, PROLIDASE, COMPND 5 IMIDODIPEPTIDASE; COMPND 6 EC: 3.4.13.9; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 GENE: PEPQ OR PF1343; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET-21B; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-PROL KEYWDS PROLIDASE, PEPTIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.J.MAHER,M.GHOSH,A.M.GRUNDEN,A.L.MENON,M.W.ADAMS,H.C.FREEMAN, AUTHOR 2 J.M.GUSS REVDAT 3 13-JUL-11 1PV9 1 VERSN REVDAT 2 24-FEB-09 1PV9 1 VERSN REVDAT 1 23-MAR-04 1PV9 0 JRNL AUTH M.J.MAHER,M.GHOSH,A.M.GRUNDEN,A.L.MENON,M.W.ADAMS, JRNL AUTH 2 H.C.FREEMAN,J.M.GUSS JRNL TITL STRUCTURE OF THE PROLIDASE FROM PYROCOCCUS FURIOSUS. JRNL REF BIOCHEMISTRY V. 43 2771 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15005612 JRNL DOI 10.1021/BI0356451 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.WILLINGHAM,M.J.MAHER,A.M.GRUNDEN,M.GHOSH,M.W.W.ADAMS, REMARK 1 AUTH 2 H.C.FREEMAN,J.M.GUSS REMARK 1 TITL CRYSTALLIZATION AND CHARACTERIZATION OF THE PROLIDASE FROM REMARK 1 TITL 2 PYROCOCCUS FURIOSUS. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 57 428 2001 REMARK 1 REFN ISSN 0907-4449 REMARK 1 DOI 10.1107/S0907444900020187 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.GHOSH,A.M.GRUNDEN,D.M.DUNN,R.WEISS,M.W.W.ADAMS REMARK 1 TITL CHARACTERIZATION OF NATIVE AND RECOMBINANT FORMS OF AN REMARK 1 TITL 2 UNUSUAL COBALT-DEPENDENT PROLINE DIPEPTIDASE (PROLIDASE) REMARK 1 TITL 3 FROM THE HYPERTHERMOPHILIC ARCHAEON PYROCOCCUS FURIOSUS. REMARK 1 REF J.BACTERIOL. V. 180 4781 1998 REMARK 1 REFN ISSN 0021-9193 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 45667 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2432 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3420 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 179 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5196 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 176 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.26000 REMARK 3 B22 (A**2) : -2.80000 REMARK 3 B33 (A**2) : 1.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.238 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.196 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.175 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.321 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5276 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7094 ; 0.848 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 648 ; 4.501 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 804 ; 0.056 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3848 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2455 ; 0.161 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 253 ; 0.094 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 16 ; 0.136 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.036 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3239 ; 0.469 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5241 ; 0.886 ; 5.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2037 ; 1.250 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1853 ; 1.920 ; 8.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 117 REMARK 3 RESIDUE RANGE : A 118 A 345 REMARK 3 ORIGIN FOR THE GROUP (A): 62.2123 35.7038 30.9133 REMARK 3 T TENSOR REMARK 3 T11: 0.0720 T22: 0.1469 REMARK 3 T33: 0.1386 T12: -0.0395 REMARK 3 T13: -0.0939 T23: 0.0377 REMARK 3 L TENSOR REMARK 3 L11: 1.9727 L22: 3.0361 REMARK 3 L33: 2.0748 L12: 0.0642 REMARK 3 L13: -0.8362 L23: 0.6155 REMARK 3 S TENSOR REMARK 3 S11: -0.0341 S12: -0.0440 S13: -0.2319 REMARK 3 S21: 0.3850 S22: -0.0776 S23: -0.2034 REMARK 3 S31: 0.0073 S32: 0.2293 S33: 0.1117 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 117 REMARK 3 RESIDUE RANGE : B 118 B 345 REMARK 3 ORIGIN FOR THE GROUP (A): 62.3032 44.3691 8.8716 REMARK 3 T TENSOR REMARK 3 T11: 0.3107 T22: 0.3296 REMARK 3 T33: 0.0719 T12: 0.1379 REMARK 3 T13: 0.0144 T23: 0.0844 REMARK 3 L TENSOR REMARK 3 L11: 2.6376 L22: 4.7821 REMARK 3 L33: 1.3233 L12: 0.8156 REMARK 3 L13: -0.6790 L23: -0.5177 REMARK 3 S TENSOR REMARK 3 S11: 0.3014 S12: 0.4837 S13: 0.0545 REMARK 3 S21: -0.7519 S22: -0.4553 S23: -0.3495 REMARK 3 S31: -0.1501 S32: -0.0092 S33: 0.1539 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PV9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUL-03. REMARK 100 THE RCSB ID CODE IS RCSB019600. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-00 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.282, 1.283, 1.240, 1.333 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51843 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.33400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.980 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, MAGNESIUM ACETATE, TRIS-HCL, REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 48.61350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HOMODIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -177.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 GLU A 3 REMARK 465 ARG A 4 REMARK 465 LEU A 5 REMARK 465 GLU A 6 REMARK 465 LYS A 7 REMARK 465 ASN A 107 REMARK 465 GLU A 346 REMARK 465 LEU A 347 REMARK 465 LEU A 348 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 GLU B 3 REMARK 465 VAL B 227 REMARK 465 GLY B 228 REMARK 465 SER B 229 REMARK 465 PRO B 230 REMARK 465 ASN B 231 REMARK 465 GLU B 232 REMARK 465 LYS B 233 REMARK 465 GLN B 234 REMARK 465 ARG B 235 REMARK 465 GLU B 236 REMARK 465 ILE B 237 REMARK 465 TYR B 238 REMARK 465 GLU B 239 REMARK 465 ILE B 240 REMARK 465 VAL B 241 REMARK 465 LEU B 242 REMARK 465 GLU B 243 REMARK 465 ASP B 276 REMARK 465 SER B 297 REMARK 465 GLN B 298 REMARK 465 ILE B 318 REMARK 465 PRO B 319 REMARK 465 LYS B 320 REMARK 465 LEU B 321 REMARK 465 GLU B 346 REMARK 465 LEU B 347 REMARK 465 LEU B 348 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 82 46.11 -96.68 REMARK 500 HIS A 192 44.14 -105.16 REMARK 500 HIS A 216 -11.72 80.30 REMARK 500 LYS A 320 -8.80 66.63 REMARK 500 THR A 333 -159.77 -99.15 REMARK 500 HIS B 192 49.76 -91.00 REMARK 500 HIS B 216 -3.26 76.53 REMARK 500 ALA B 252 79.80 -66.62 REMARK 500 LYS B 342 78.71 -119.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 327 OE2 REMARK 620 2 GLU A 313 OE2 78.8 REMARK 620 3 HIS A 284 NE2 125.2 88.0 REMARK 620 4 ASP A 220 OD2 90.1 163.4 88.5 REMARK 620 5 HOH A 502 O 104.0 97.5 130.6 97.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 220 OD1 REMARK 620 2 ASP A 209 OD1 107.2 REMARK 620 3 GLU A 327 OE1 92.4 105.5 REMARK 620 4 HOH A 502 O 112.0 128.4 104.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 327 OE2 REMARK 620 2 HIS B 284 NE2 134.1 REMARK 620 3 ASP B 220 OD2 85.7 98.7 REMARK 620 4 GLU B 313 OE2 83.7 92.5 168.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 220 OD1 REMARK 620 2 ASP B 209 OD1 110.7 REMARK 620 3 GLU B 327 OE1 81.8 100.2 REMARK 620 4 ASP B 209 OD2 161.1 53.9 110.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 402 DBREF 1PV9 A 1 348 UNP P81535 PEPQ_PYRFU 1 348 DBREF 1PV9 B 1 348 UNP P81535 PEPQ_PYRFU 1 348 SEQRES 1 A 348 MET LYS GLU ARG LEU GLU LYS LEU VAL LYS PHE MET ASP SEQRES 2 A 348 GLU ASN SER ILE ASP ARG VAL PHE ILE ALA LYS PRO VAL SEQRES 3 A 348 ASN VAL TYR TYR PHE SER GLY THR SER PRO LEU GLY GLY SEQRES 4 A 348 GLY TYR ILE ILE VAL ASP GLY ASP GLU ALA THR LEU TYR SEQRES 5 A 348 VAL PRO GLU LEU GLU TYR GLU MET ALA LYS GLU GLU SER SEQRES 6 A 348 LYS LEU PRO VAL VAL LYS PHE LYS LYS PHE ASP GLU ILE SEQRES 7 A 348 TYR GLU ILE LEU LYS ASN THR GLU THR LEU GLY ILE GLU SEQRES 8 A 348 GLY THR LEU SER TYR SER MET VAL GLU ASN PHE LYS GLU SEQRES 9 A 348 LYS SER ASN VAL LYS GLU PHE LYS LYS ILE ASP ASP VAL SEQRES 10 A 348 ILE LYS ASP LEU ARG ILE ILE LYS THR LYS GLU GLU ILE SEQRES 11 A 348 GLU ILE ILE GLU LYS ALA CYS GLU ILE ALA ASP LYS ALA SEQRES 12 A 348 VAL MET ALA ALA ILE GLU GLU ILE THR GLU GLY LYS ARG SEQRES 13 A 348 GLU ARG GLU VAL ALA ALA LYS VAL GLU TYR LEU MET LYS SEQRES 14 A 348 MET ASN GLY ALA GLU LYS PRO ALA PHE ASP THR ILE ILE SEQRES 15 A 348 ALA SER GLY HIS ARG SER ALA LEU PRO HIS GLY VAL ALA SEQRES 16 A 348 SER ASP LYS ARG ILE GLU ARG GLY ASP LEU VAL VAL ILE SEQRES 17 A 348 ASP LEU GLY ALA LEU TYR ASN HIS TYR ASN SER ASP ILE SEQRES 18 A 348 THR ARG THR ILE VAL VAL GLY SER PRO ASN GLU LYS GLN SEQRES 19 A 348 ARG GLU ILE TYR GLU ILE VAL LEU GLU ALA GLN LYS ARG SEQRES 20 A 348 ALA VAL GLU ALA ALA LYS PRO GLY MET THR ALA LYS GLU SEQRES 21 A 348 LEU ASP SER ILE ALA ARG GLU ILE ILE LYS GLU TYR GLY SEQRES 22 A 348 TYR GLY ASP TYR PHE ILE HIS SER LEU GLY HIS GLY VAL SEQRES 23 A 348 GLY LEU GLU ILE HIS GLU TRP PRO ARG ILE SER GLN TYR SEQRES 24 A 348 ASP GLU THR VAL LEU LYS GLU GLY MET VAL ILE THR ILE SEQRES 25 A 348 GLU PRO GLY ILE TYR ILE PRO LYS LEU GLY GLY VAL ARG SEQRES 26 A 348 ILE GLU ASP THR VAL LEU ILE THR GLU ASN GLY ALA LYS SEQRES 27 A 348 ARG LEU THR LYS THR GLU ARG GLU LEU LEU SEQRES 1 B 348 MET LYS GLU ARG LEU GLU LYS LEU VAL LYS PHE MET ASP SEQRES 2 B 348 GLU ASN SER ILE ASP ARG VAL PHE ILE ALA LYS PRO VAL SEQRES 3 B 348 ASN VAL TYR TYR PHE SER GLY THR SER PRO LEU GLY GLY SEQRES 4 B 348 GLY TYR ILE ILE VAL ASP GLY ASP GLU ALA THR LEU TYR SEQRES 5 B 348 VAL PRO GLU LEU GLU TYR GLU MET ALA LYS GLU GLU SER SEQRES 6 B 348 LYS LEU PRO VAL VAL LYS PHE LYS LYS PHE ASP GLU ILE SEQRES 7 B 348 TYR GLU ILE LEU LYS ASN THR GLU THR LEU GLY ILE GLU SEQRES 8 B 348 GLY THR LEU SER TYR SER MET VAL GLU ASN PHE LYS GLU SEQRES 9 B 348 LYS SER ASN VAL LYS GLU PHE LYS LYS ILE ASP ASP VAL SEQRES 10 B 348 ILE LYS ASP LEU ARG ILE ILE LYS THR LYS GLU GLU ILE SEQRES 11 B 348 GLU ILE ILE GLU LYS ALA CYS GLU ILE ALA ASP LYS ALA SEQRES 12 B 348 VAL MET ALA ALA ILE GLU GLU ILE THR GLU GLY LYS ARG SEQRES 13 B 348 GLU ARG GLU VAL ALA ALA LYS VAL GLU TYR LEU MET LYS SEQRES 14 B 348 MET ASN GLY ALA GLU LYS PRO ALA PHE ASP THR ILE ILE SEQRES 15 B 348 ALA SER GLY HIS ARG SER ALA LEU PRO HIS GLY VAL ALA SEQRES 16 B 348 SER ASP LYS ARG ILE GLU ARG GLY ASP LEU VAL VAL ILE SEQRES 17 B 348 ASP LEU GLY ALA LEU TYR ASN HIS TYR ASN SER ASP ILE SEQRES 18 B 348 THR ARG THR ILE VAL VAL GLY SER PRO ASN GLU LYS GLN SEQRES 19 B 348 ARG GLU ILE TYR GLU ILE VAL LEU GLU ALA GLN LYS ARG SEQRES 20 B 348 ALA VAL GLU ALA ALA LYS PRO GLY MET THR ALA LYS GLU SEQRES 21 B 348 LEU ASP SER ILE ALA ARG GLU ILE ILE LYS GLU TYR GLY SEQRES 22 B 348 TYR GLY ASP TYR PHE ILE HIS SER LEU GLY HIS GLY VAL SEQRES 23 B 348 GLY LEU GLU ILE HIS GLU TRP PRO ARG ILE SER GLN TYR SEQRES 24 B 348 ASP GLU THR VAL LEU LYS GLU GLY MET VAL ILE THR ILE SEQRES 25 B 348 GLU PRO GLY ILE TYR ILE PRO LYS LEU GLY GLY VAL ARG SEQRES 26 B 348 ILE GLU ASP THR VAL LEU ILE THR GLU ASN GLY ALA LYS SEQRES 27 B 348 ARG LEU THR LYS THR GLU ARG GLU LEU LEU HET ZN A 401 1 HET ZN A 402 1 HET ZN B 401 1 HET ZN B 402 1 HETNAM ZN ZINC ION FORMUL 3 ZN 4(ZN 2+) FORMUL 7 HOH *176(H2 O) HELIX 1 1 LEU A 8 ASN A 15 1 8 HELIX 2 2 VAL A 28 GLY A 33 1 6 HELIX 3 3 GLU A 57 SER A 65 1 9 HELIX 4 4 ASP A 76 LEU A 82 1 7 HELIX 5 5 SER A 95 LYS A 105 1 11 HELIX 6 6 ILE A 114 ILE A 123 1 10 HELIX 7 7 THR A 126 ILE A 151 1 26 HELIX 8 8 ARG A 156 ASN A 171 1 16 HELIX 9 9 HIS A 186 LEU A 190 5 5 HELIX 10 10 ASN A 231 ALA A 252 1 22 HELIX 11 11 THR A 257 TYR A 272 1 16 HELIX 12 12 TYR A 274 PHE A 278 5 5 HELIX 13 13 ARG B 4 ASN B 15 1 12 HELIX 14 14 VAL B 28 GLY B 33 1 6 HELIX 15 15 GLU B 57 GLU B 63 1 7 HELIX 16 16 LYS B 74 ASP B 76 5 3 HELIX 17 17 GLU B 77 LEU B 82 1 6 HELIX 18 18 SER B 95 SER B 106 1 12 HELIX 19 19 ILE B 114 ILE B 123 1 10 HELIX 20 20 THR B 126 ILE B 151 1 26 HELIX 21 21 ARG B 156 ASN B 171 1 16 HELIX 22 22 SER B 184 LEU B 190 5 7 HELIX 23 23 ALA B 244 ALA B 252 1 9 HELIX 24 24 THR B 257 GLY B 273 1 17 SHEET 1 A 6 VAL A 69 PHE A 72 0 SHEET 2 A 6 GLU A 48 PRO A 54 1 N LEU A 51 O VAL A 70 SHEET 3 A 6 TYR A 41 ASP A 45 -1 N TYR A 41 O TYR A 52 SHEET 4 A 6 ARG A 19 ILE A 22 -1 N ILE A 22 O ILE A 42 SHEET 5 A 6 THR A 87 ILE A 90 1 O GLY A 89 N ARG A 19 SHEET 6 A 6 GLU A 110 LYS A 113 1 O GLU A 110 N LEU A 88 SHEET 1 B 3 LYS A 175 PRO A 176 0 SHEET 2 B 3 ALA A 212 TYR A 214 -1 O LEU A 213 N LYS A 175 SHEET 3 B 3 TYR A 217 ASN A 218 -1 O TYR A 217 N TYR A 214 SHEET 1 C 3 ILE A 181 SER A 184 0 SHEET 2 C 3 LEU A 205 LEU A 210 -1 O ASP A 209 N ILE A 181 SHEET 3 C 3 ILE A 221 VAL A 226 -1 O ILE A 225 N VAL A 206 SHEET 1 D 2 GLY A 283 GLY A 285 0 SHEET 2 D 2 GLU A 292 ILE A 296 -1 O GLU A 292 N GLY A 285 SHEET 1 E 3 VAL A 309 ILE A 312 0 SHEET 2 E 3 ASP A 328 ILE A 332 -1 O VAL A 330 N ILE A 310 SHEET 3 E 3 ALA A 337 ARG A 339 -1 O LYS A 338 N LEU A 331 SHEET 1 F 2 GLY A 315 ILE A 318 0 SHEET 2 F 2 GLY A 322 ARG A 325 -1 O GLY A 322 N ILE A 318 SHEET 1 G 6 VAL B 69 PHE B 72 0 SHEET 2 G 6 GLU B 48 PRO B 54 1 N LEU B 51 O VAL B 70 SHEET 3 G 6 TYR B 41 ASP B 45 -1 N TYR B 41 O TYR B 52 SHEET 4 G 6 ARG B 19 ILE B 22 -1 N ILE B 22 O ILE B 42 SHEET 5 G 6 THR B 87 ILE B 90 1 O GLY B 89 N ARG B 19 SHEET 6 G 6 GLU B 110 LYS B 113 1 O GLU B 110 N LEU B 88 SHEET 1 H 3 LYS B 175 PRO B 176 0 SHEET 2 H 3 ALA B 212 TYR B 214 -1 O LEU B 213 N LYS B 175 SHEET 3 H 3 TYR B 217 ASN B 218 -1 O TYR B 217 N TYR B 214 SHEET 1 I 3 ILE B 181 ALA B 183 0 SHEET 2 I 3 VAL B 206 LEU B 210 -1 O ASP B 209 N ILE B 181 SHEET 3 I 3 ILE B 221 ILE B 225 -1 O ARG B 223 N ILE B 208 SHEET 1 J 2 GLY B 283 GLY B 285 0 SHEET 2 J 2 GLU B 292 ILE B 296 -1 O ILE B 296 N GLY B 283 SHEET 1 K 3 VAL B 309 ILE B 312 0 SHEET 2 K 3 ASP B 328 THR B 333 -1 O VAL B 330 N ILE B 310 SHEET 3 K 3 GLY B 336 ARG B 339 -1 O LYS B 338 N LEU B 331 SHEET 1 L 2 GLY B 315 ILE B 316 0 SHEET 2 L 2 VAL B 324 ARG B 325 -1 O VAL B 324 N ILE B 316 LINK ZN ZN A 401 OE2 GLU A 327 1555 1555 2.07 LINK ZN ZN A 401 OE2 GLU A 313 1555 1555 2.28 LINK ZN ZN A 401 NE2 HIS A 284 1555 1555 2.13 LINK ZN ZN A 401 OD2 ASP A 220 1555 1555 2.18 LINK ZN ZN A 402 OD1 ASP A 220 1555 1555 2.06 LINK ZN ZN A 402 OD1 ASP A 209 1555 1555 2.09 LINK ZN ZN A 402 OE1 GLU A 327 1555 1555 1.99 LINK ZN ZN B 401 OE2 GLU B 327 1555 1555 2.33 LINK ZN ZN B 401 NE2 HIS B 284 1555 1555 1.96 LINK ZN ZN B 401 OD2 ASP B 220 1555 1555 2.16 LINK ZN ZN B 402 OD1 ASP B 220 1555 1555 2.18 LINK ZN ZN B 402 OD1 ASP B 209 1555 1555 1.93 LINK ZN ZN B 402 OE1 GLU B 327 1555 1555 2.31 LINK ZN ZN A 401 O HOH A 502 1555 1555 2.01 LINK ZN ZN A 402 O HOH A 502 1555 1555 2.11 LINK ZN ZN B 401 OE2 GLU B 313 1555 1555 2.61 LINK ZN ZN B 402 OD2 ASP B 209 1555 1555 2.60 CISPEP 1 TRP A 293 PRO A 294 0 -7.18 CISPEP 2 TRP B 293 PRO B 294 0 -4.51 SITE 1 AC1 6 ASP A 220 HIS A 284 GLU A 313 GLU A 327 SITE 2 AC1 6 ZN A 402 HOH A 502 SITE 1 AC2 6 ASP A 209 ASP A 220 THR A 222 GLU A 327 SITE 2 AC2 6 ZN A 401 HOH A 502 SITE 1 AC3 6 ASP B 220 HIS B 284 THR B 311 GLU B 313 SITE 2 AC3 6 GLU B 327 ZN B 402 SITE 1 AC4 6 PHE B 178 ASP B 209 ASP B 220 THR B 222 SITE 2 AC4 6 GLU B 327 ZN B 401 CRYST1 56.476 97.227 69.882 90.00 97.09 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017707 0.000000 0.002202 0.00000 SCALE2 0.000000 0.010285 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014420 0.00000 MASTER 412 0 4 24 38 0 8 6 0 0 0 54 END