HEADER PLASMINOGEN ACTIVATOR 16-SEP-91 1PK2 TITLE SOLUTION STRUCTURE OF THE TISSUE-TYPE PLASMINOGEN ACTIVATOR TITLE 2 KRINGLE 2 DOMAIN COMPLEXED TO 6-AMINOHEXANOIC ACID AN TITLE 3 ANTIFIBRINOLYTIC DRUG COMPND MOL_ID: 1; COMPND 2 MOLECULE: TISSUE-TYPE PLASMINOGEN ACTIVATOR; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.21.68; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS PLASMINOGEN ACTIVATOR EXPDTA SOLUTION NMR AUTHOR M.LLINAS,I.-J.L.BYEON REVDAT 3 24-FEB-09 1PK2 1 VERSN REVDAT 2 01-APR-03 1PK2 1 JRNL REVDAT 1 31-JAN-94 1PK2 0 JRNL AUTH I.J.BYEON,M.LLINAS JRNL TITL SOLUTION STRUCTURE OF THE TISSUE-TYPE PLASMINOGEN JRNL TITL 2 ACTIVATOR KRINGLE 2 DOMAIN COMPLEXED TO JRNL TITL 3 6-AMINOHEXANOIC ACID AN ANTIFIBRINOLYTIC DRUG. JRNL REF J.MOL.BIOL. V. 222 1035 1991 JRNL REFN ISSN 0022-2836 JRNL PMID 1762144 JRNL DOI 10.1016/0022-2836(91)90592-T REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH I.-J.L.BYEON,R.F.KELLEY,M.LLINAS REMARK 1 TITL KRINGLE-2 DOMAIN OF THE TISSUE-TYPE PLASMINOGEN REMARK 1 TITL 2 ACTIVATOR H-NMR ASSIGNMENTS AND SECONDARY STRUCTURE REMARK 1 REF EUR.J.BIOCHEM. V. 197 155 1991 REMARK 1 REFN ISSN 0014-2956 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PK2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 19 CG HIS A 19 ND1 -0.115 REMARK 500 HIS A 56 CG HIS A 56 ND1 -0.114 REMARK 500 TRP A 69 CG TRP A 69 CD2 -0.105 REMARK 500 HIS A 71 CG HIS A 71 ND1 -0.128 REMARK 500 TRP A 80 CG TRP A 80 CD2 -0.117 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP A 31 CG - CD1 - NE1 ANGL. DEV. = -6.1 DEGREES REMARK 500 TRP A 31 NE1 - CE2 - CZ2 ANGL. DEV. = 8.2 DEGREES REMARK 500 TRP A 31 NE1 - CE2 - CD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 TRP A 69 CD1 - CG - CD2 ANGL. DEV. = 4.9 DEGREES REMARK 500 TRP A 69 CG - CD1 - NE1 ANGL. DEV. = -6.9 DEGREES REMARK 500 TRP A 69 CD1 - NE1 - CE2 ANGL. DEV. = 5.6 DEGREES REMARK 500 TRP A 69 NE1 - CE2 - CZ2 ANGL. DEV. = 8.6 DEGREES REMARK 500 TRP A 69 NE1 - CE2 - CD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 TRP A 80 CG - CD1 - NE1 ANGL. DEV. = -6.8 DEGREES REMARK 500 TRP A 80 NE1 - CE2 - CZ2 ANGL. DEV. = 7.8 DEGREES REMARK 500 TRP A 80 NE1 - CE2 - CD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 2 -128.74 45.36 REMARK 500 ASP A 6 105.88 -30.75 REMARK 500 ASN A 11 14.52 -142.66 REMARK 500 SER A 24 16.67 -163.22 REMARK 500 ALA A 26 -168.33 162.30 REMARK 500 VAL A 40 -79.67 -20.27 REMARK 500 HIS A 56 -169.87 -166.67 REMARK 500 ASN A 61 60.26 -119.80 REMARK 500 ASP A 65 -167.94 -70.56 REMARK 500 ALA A 66 -100.55 -69.38 REMARK 500 TRP A 69 -165.62 -103.77 REMARK 500 ASN A 75 94.63 -53.06 REMARK 500 ARG A 76 16.87 54.99 REMARK 500 TRP A 80 128.33 -175.01 REMARK 500 PRO A 86 105.90 -57.41 REMARK 500 SER A 89 -78.83 61.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 16 0.31 SIDE_CHAIN REMARK 500 ARG A 60 0.30 SIDE_CHAIN REMARK 500 ARG A 76 0.32 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACA A 91 DBREF 1PK2 A 1 90 UNP P00750 TPA_HUMAN 209 298 SEQRES 1 A 90 SER GLU GLY ASN SER ASP CYS TYR PHE GLY ASN GLY SER SEQRES 2 A 90 ALA TYR ARG GLY THR HIS SER LEU THR GLU SER GLY ALA SEQRES 3 A 90 SER CYS LEU PRO TRP ASN SER MET ILE LEU ILE GLY LYS SEQRES 4 A 90 VAL TYR THR ALA GLN ASN PRO SER ALA GLN ALA LEU GLY SEQRES 5 A 90 LEU GLY LYS HIS ASN TYR CYS ARG ASN PRO ASP GLY ASP SEQRES 6 A 90 ALA LYS PRO TRP CYS HIS VAL LEU LYS ASN ARG ARG LEU SEQRES 7 A 90 THR TRP GLU TYR CYS ASP VAL PRO SER CYS SER THR HET ACA A 91 22 HETNAM ACA 6-AMINOHEXANOIC ACID HETSYN ACA AMINOCAPROIC ACID FORMUL 2 ACA C6 H13 N O2 HELIX 1 1 SER A 33 ILE A 37 5 5 HELIX 2 2 SER A 47 GLY A 52 1 6 SHEET 1 A 2 TRP A 69 LYS A 74 0 SHEET 2 A 2 ARG A 77 TYR A 82 -1 O ARG A 77 N LYS A 74 SSBOND 1 CYS A 7 CYS A 88 1555 1555 2.02 SSBOND 2 CYS A 28 CYS A 70 1555 1555 2.01 SSBOND 3 CYS A 59 CYS A 83 1555 1555 2.01 SITE 1 AC1 6 ASP A 63 TRP A 69 HIS A 71 LEU A 78 SITE 2 AC1 6 THR A 79 TRP A 80 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 158 0 1 2 2 0 2 6 0 0 0 7 END