HEADER VIRAL PROTEIN 04-JUN-03 1PJW TITLE SOLUTION STRUCTURE OF THE DOMAIN III OF THE JAPAN TITLE 2 ENCEPHALITIS VIRUS ENVELOPE PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DOMAIN III; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: JAPANESE ENCEPHALITIS VIRUS; SOURCE 3 ORGANISM_TAXID: 11072; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS FLAVIVIRUS, JEV, E PROTEIN, STRUCTURE, NMR, EPITOPE MAPPING, KEYWDS 2 VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR K.P.WU,C.W.WU,Y.P.TSAO,Y.C.LOU,C.W.LIN REVDAT 2 24-FEB-09 1PJW 1 VERSN REVDAT 1 25-NOV-03 1PJW 0 JRNL AUTH K.P.WU,C.W.WU,Y.P.TSAO,T.W.KUO,Y.C.LOU,C.W.LIN, JRNL AUTH 2 S.C.WU,J.W.CHENG JRNL TITL STRUCTURAL BASIS OF A FLAVIVIRUS RECOGNIZED BY ITS JRNL TITL 2 NEUTRALIZING ANTIBODY: SOLUTION STRUCTURE OF THE JRNL TITL 3 DOMAIN III OF THE JAPANESE ENCEPHALITIS VIRUS JRNL TITL 4 ENVELOPE PROTEIN. JRNL REF J.BIOL.CHEM. V. 278 46007 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12952958 JRNL DOI 10.1074/JBC.M307776200 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 957 RESTRAINTS, 717 ARE NOE-DERIVED DISTANCE CONSTRAINTS, REMARK 3 194 DIHEDRAL ANGLE RESTRAINTS,46 DISTANCE RESTRAINTS FROM REMARK 3 HYDROGEN BONDS. REMARK 4 REMARK 4 1PJW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JUN-03. REMARK 100 THE RCSB ID CODE IS RCSB019375. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2.3MM JEV DOMAIN III PROTEIN, REMARK 210 N15-C13 LABLED AND N15-LABLED, REMARK 210 136MM NACL, 2.68MM KCL, 10MM REMARK 210 NA2HPO4, 1.76MM KH2PO4 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, 3D_15N- REMARK 210 SEPARATED_NOESY, 3D_13C- REMARK 210 SEPARATED_NOESY, HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, AURELIA 2.1, REMARK 210 NMRPIPE, X-PLOR 3.851 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY, STRUCTURES REMARK 210 WITH FAVORABLE NON-BOND REMARK 210 ENERGY, STRUCTURES WITH THE REMARK 210 LEAST RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 9 109.43 -47.56 REMARK 500 1 THR A 14 41.96 -161.56 REMARK 500 1 LEU A 54 29.96 81.47 REMARK 500 1 VAL A 60 -49.08 -143.89 REMARK 500 1 VAL A 66 170.68 -44.65 REMARK 500 1 ASN A 67 157.70 -47.08 REMARK 500 1 LYS A 78 88.86 -62.87 REMARK 500 1 GLU A 84 62.87 -113.43 REMARK 500 1 MET A 96 -150.77 -108.38 REMARK 500 1 ASP A 98 -105.67 -74.98 REMARK 500 1 ALA A 108 152.36 179.76 REMARK 500 2 LYS A 6 -164.03 -106.66 REMARK 500 2 THR A 14 42.12 -160.84 REMARK 500 2 LEU A 54 29.55 81.17 REMARK 500 2 VAL A 60 -36.22 -139.20 REMARK 500 2 VAL A 66 173.30 -47.16 REMARK 500 2 LYS A 78 88.06 -63.21 REMARK 500 2 GLU A 84 68.56 -117.95 REMARK 500 2 ASP A 98 -108.41 -64.00 REMARK 500 2 ALA A 108 131.06 -172.69 REMARK 500 3 TYR A 10 174.47 -46.79 REMARK 500 3 THR A 14 44.04 -161.43 REMARK 500 3 LYS A 16 61.85 -111.48 REMARK 500 3 LEU A 54 30.51 79.53 REMARK 500 3 VAL A 60 -37.37 -148.24 REMARK 500 3 VAL A 66 -170.61 -55.07 REMARK 500 3 LYS A 78 89.56 -64.34 REMARK 500 3 GLU A 84 70.05 -118.07 REMARK 500 3 ASP A 98 -75.58 -71.14 REMARK 500 3 ALA A 108 141.14 179.73 REMARK 500 4 THR A 9 155.42 -46.67 REMARK 500 4 THR A 14 -76.55 -158.24 REMARK 500 4 LYS A 16 81.97 -56.04 REMARK 500 4 LEU A 54 30.76 77.21 REMARK 500 4 VAL A 60 -36.41 -143.86 REMARK 500 4 VAL A 66 -175.02 -57.92 REMARK 500 4 ASN A 67 156.91 -46.93 REMARK 500 4 ALA A 71 65.01 -66.09 REMARK 500 4 LYS A 78 88.33 -62.96 REMARK 500 4 GLU A 84 72.72 -106.57 REMARK 500 4 ASP A 98 -82.82 -65.97 REMARK 500 4 SER A 110 -150.47 -65.15 REMARK 500 5 LEU A 5 73.98 -103.71 REMARK 500 5 THR A 9 76.30 -114.26 REMARK 500 5 THR A 14 61.70 -160.54 REMARK 500 5 LEU A 54 30.39 80.07 REMARK 500 5 VAL A 60 -59.42 -133.83 REMARK 500 5 VAL A 66 171.25 -44.34 REMARK 500 5 ASN A 67 162.20 -46.86 REMARK 500 5 LYS A 78 89.11 -63.92 REMARK 500 5 GLU A 84 73.96 -106.13 REMARK 500 5 PHE A 87 103.49 -53.71 REMARK 500 5 TRP A 105 93.59 -58.06 REMARK 500 6 THR A 14 51.16 -161.32 REMARK 500 6 LYS A 16 61.29 -101.48 REMARK 500 6 PHE A 19 107.94 -59.02 REMARK 500 6 LEU A 54 30.49 79.72 REMARK 500 6 VAL A 60 -33.67 -148.07 REMARK 500 6 VAL A 66 176.16 -58.14 REMARK 500 6 LYS A 78 88.62 -63.19 REMARK 500 6 MET A 96 -71.41 -98.36 REMARK 500 6 ASP A 98 -46.96 -162.18 REMARK 500 6 SER A 110 43.30 -141.65 REMARK 500 7 LYS A 6 -165.12 -120.28 REMARK 500 7 THR A 14 35.84 -161.75 REMARK 500 7 SER A 40 31.08 -82.95 REMARK 500 7 LEU A 54 30.56 78.32 REMARK 500 7 VAL A 60 -46.87 -139.31 REMARK 500 7 VAL A 66 -172.74 -54.76 REMARK 500 7 VAL A 70 60.26 -103.69 REMARK 500 7 ALA A 71 57.86 -69.67 REMARK 500 7 LYS A 78 88.38 -63.70 REMARK 500 7 ASP A 98 -77.61 -82.38 REMARK 500 7 ALA A 108 111.94 -174.57 REMARK 500 8 THR A 14 31.80 -160.76 REMARK 500 8 LEU A 54 -61.67 170.68 REMARK 500 8 VAL A 60 -47.77 -135.02 REMARK 500 8 VAL A 66 179.99 -50.99 REMARK 500 8 LYS A 78 88.72 -62.91 REMARK 500 8 GLU A 84 57.05 -115.86 REMARK 500 8 ASP A 98 -50.91 -160.56 REMARK 500 9 THR A 14 53.95 -161.58 REMARK 500 9 PHE A 19 96.87 -60.97 REMARK 500 9 LEU A 54 29.27 87.18 REMARK 500 9 VAL A 60 -33.72 -131.45 REMARK 500 9 VAL A 66 -170.74 -59.15 REMARK 500 9 LYS A 78 87.94 -62.79 REMARK 500 9 GLU A 84 74.87 -106.93 REMARK 500 9 MET A 96 70.07 -115.74 REMARK 500 9 ASP A 98 -88.10 -149.36 REMARK 500 9 SER A 110 -33.79 -174.70 REMARK 500 10 LEU A 5 62.58 -110.95 REMARK 500 10 THR A 14 35.63 -161.98 REMARK 500 10 GLU A 15 3.51 -68.25 REMARK 500 10 LYS A 16 60.55 -105.18 REMARK 500 10 PHE A 19 97.10 -56.02 REMARK 500 10 LEU A 54 19.61 117.69 REMARK 500 10 VAL A 60 -42.32 -137.86 REMARK 500 10 VAL A 66 179.34 -53.40 REMARK 500 10 LYS A 78 90.48 -62.86 REMARK 500 10 GLU A 84 59.30 -114.46 REMARK 500 10 ASP A 98 -70.16 -81.39 REMARK 500 11 THR A 9 95.60 -45.44 REMARK 500 11 THR A 14 19.54 -162.93 REMARK 500 11 THR A 26 -45.55 -134.24 REMARK 500 11 LEU A 54 30.24 78.72 REMARK 500 11 VAL A 60 -43.66 -135.12 REMARK 500 11 VAL A 66 -170.48 -52.87 REMARK 500 11 LYS A 78 88.83 -63.44 REMARK 500 11 GLU A 84 75.55 -109.34 REMARK 500 11 ASP A 98 -85.26 -90.60 REMARK 500 11 TRP A 105 109.52 -59.78 REMARK 500 11 SER A 110 101.48 57.17 REMARK 500 12 THR A 9 156.37 -44.64 REMARK 500 12 THR A 14 50.37 -160.27 REMARK 500 12 GLU A 15 28.18 -77.88 REMARK 500 12 PHE A 19 98.38 -61.24 REMARK 500 12 LEU A 54 -71.62 173.19 REMARK 500 12 VAL A 66 159.78 -41.23 REMARK 500 12 ASN A 67 158.59 -46.58 REMARK 500 12 LYS A 78 88.65 -63.14 REMARK 500 12 GLU A 84 66.24 -115.33 REMARK 500 12 MET A 96 13.89 -153.54 REMARK 500 12 ASP A 98 -68.71 -99.44 REMARK 500 12 TRP A 105 93.89 -58.51 REMARK 500 13 THR A 14 28.90 -162.25 REMARK 500 13 SER A 53 99.90 -67.61 REMARK 500 13 LEU A 54 -67.15 172.06 REMARK 500 13 VAL A 60 10.41 -147.18 REMARK 500 13 VAL A 64 42.79 -100.07 REMARK 500 13 VAL A 66 -171.25 -52.72 REMARK 500 13 LYS A 78 89.03 -63.16 REMARK 500 13 GLU A 84 67.89 -110.79 REMARK 500 13 ASP A 98 -107.59 -63.75 REMARK 500 13 TRP A 105 99.38 -51.76 REMARK 500 14 TYR A 10 179.06 -48.07 REMARK 500 14 THR A 14 25.09 -162.22 REMARK 500 14 GLU A 15 -18.67 -49.78 REMARK 500 14 THR A 26 -80.84 -100.66 REMARK 500 14 LEU A 54 -64.12 171.00 REMARK 500 14 VAL A 60 -36.35 -142.30 REMARK 500 14 VAL A 66 168.93 -44.09 REMARK 500 14 LYS A 78 88.47 -62.98 REMARK 500 14 GLU A 84 76.62 -109.24 REMARK 500 14 HIS A 104 79.92 -119.34 REMARK 500 14 ALA A 108 154.72 -47.49 REMARK 500 14 SER A 110 -177.22 -66.46 REMARK 500 15 THR A 9 173.87 -51.17 REMARK 500 15 THR A 14 62.80 -161.50 REMARK 500 15 LEU A 54 30.55 78.58 REMARK 500 15 VAL A 60 -31.43 -142.31 REMARK 500 15 VAL A 66 -172.29 -52.23 REMARK 500 15 VAL A 70 60.43 -116.29 REMARK 500 15 LYS A 78 88.82 -63.35 REMARK 500 15 GLU A 84 66.38 -114.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 62 0.24 SIDE_CHAIN REMARK 500 3 ARG A 62 0.21 SIDE_CHAIN REMARK 500 4 ARG A 62 0.24 SIDE_CHAIN REMARK 500 5 ARG A 62 0.31 SIDE_CHAIN REMARK 500 6 ARG A 62 0.17 SIDE_CHAIN REMARK 500 7 ARG A 62 0.31 SIDE_CHAIN REMARK 500 8 ARG A 62 0.30 SIDE_CHAIN REMARK 500 9 ARG A 62 0.30 SIDE_CHAIN REMARK 500 10 ARG A 62 0.30 SIDE_CHAIN REMARK 500 11 ARG A 62 0.21 SIDE_CHAIN REMARK 500 13 ARG A 62 0.25 SIDE_CHAIN REMARK 500 14 ARG A 62 0.26 SIDE_CHAIN REMARK 500 15 ARG A 62 0.28 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1PJW A 1 111 UNP Q9J0X3 Q9J0X3_9FLAV 292 402 SEQRES 1 A 111 ASP LYS LEU ALA LEU LYS GLY THR THR TYR GLY MET CYS SEQRES 2 A 111 THR GLU LYS PHE SER PHE ALA LYS ASN PRO ALA ASP THR SEQRES 3 A 111 GLY HIS GLY THR VAL VAL ILE GLU LEU SER TYR SER GLY SEQRES 4 A 111 SER ASP GLY PRO CYS LYS ILE PRO ILE VAL SER VAL ALA SEQRES 5 A 111 SER LEU ASN ASP MET THR PRO VAL GLY ARG LEU VAL THR SEQRES 6 A 111 VAL ASN PRO PHE VAL ALA THR SER SER ALA ASN SER LYS SEQRES 7 A 111 VAL LEU VAL GLU MET GLU PRO PRO PHE GLY ASP SER TYR SEQRES 8 A 111 ILE VAL VAL GLY MET GLY ASP LYS GLN ILE ASN HIS HIS SEQRES 9 A 111 TRP HIS LYS ALA GLY SER THR SHEET 1 A 3 PHE A 17 ASP A 25 0 SHEET 2 A 3 VAL A 31 TYR A 37 -1 O VAL A 32 N ALA A 24 SHEET 3 A 3 LYS A 78 MET A 83 -1 O VAL A 81 N ILE A 33 SHEET 1 B 3 ILE A 48 ALA A 52 0 SHEET 2 B 3 SER A 90 GLY A 95 -1 O TYR A 91 N VAL A 51 SHEET 3 B 3 GLN A 100 TRP A 105 -1 O HIS A 103 N ILE A 92 SSBOND 1 CYS A 13 CYS A 44 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 261 0 0 0 6 0 0 6 0 0 0 9 END