HEADER TRANSFERASE 24-MAY-03 1PF6 TITLE IN SILICO STRUCTURE OF PROTEIN KINASE 9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DIVISION PROTEIN KINASE 9; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SERINE/THREONINE-PROTEIN KINASE PITALRE, C-2K; COMPND 5 EC: 2.7.1.- SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN KEYWDS TRANSFERASE, SERINE/THREONINE-PROTEIN KINASE, DR.MALLENA, KEYWDS 2 ATP-BINDING, NUCLEAR PROTEIN, POLYMORPHISM, INSIGHT II EXPDTA THEORETICAL MODEL AUTHOR S.C.MALLENA,J.A.R.P.SARMA,M.B.KANCHANA,G.RAMBABU REVDAT 1 03-JUN-03 1PF6 0 JRNL AUTH S.C.MALLENA,J.A.R.P.SARMA,M.B.KANCHANA,G.RAMBABU JRNL TITL IN SILICO STRUCTRUE OF PROTEIN KINASE 9 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH X.GRANA,A.DE LUCA,N.SANG,Y.FU,P.P.CLAUDIO, REMARK 1 AUTH 2 J.ROSENBLATT,D.O.MORGAN,A.GIORDANO REMARK 1 TITL PITALRE, A NUCLEAR CDC2-RELATED PROTEIN KINASE REMARK 1 TITL 2 THAT PHOSPHORYLATES THE RETINOBLASTOMA PROTEIN IN REMARK 1 TITL 3 VITRO REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 91 3834 1994 REMARK 1 REFN ASTM PNASA6 US ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : MODELER INSIGHT II REMARK 3 AUTHORS : SALI, A. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MODELER IS AN AUTOMATED HOMOLOGY REMARK 3 MODELING SCHEME DESIGNED TO FIND THE MOST PROBABLE THREE REMARK 3 DIMENSIONAL STRUCTURE OF A PROTEIN, GIVEN ITS AMINO ACID REMARK 3 SEQUENCE AND ITS ALIGNMENT WITH RELATED STRUCTURES. IT DERIVES REMARK 3 3D PROTEIN MODELS WITHOUT THE TIME CONSUMING SEPARATE STAGES REMARK 3 OF CORE REGION IDENTIFICATION AND LOOP REGION BUILDING OR REMARK 3 SEARCHING THAT ARE INHERENT TO MANUAL HOMOLOGY MODELING SCHEMES REMARK 4 REMARK 4 1PF6 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAY-2003. REMARK 100 THE RCSB ID CODE IS RCSB019286. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: THEORETICAL MODEL DEVELPOED USING IN-SILICO TOOLS REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR A 330 CA THR A 330 C 0.210 REMARK 500 HIS A 331 CA HIS A 331 C 0.169 REMARK 500 LEU A 332 N LEU A 332 CA 0.196 REMARK 500 LEU A 332 CA LEU A 332 C 0.349 REMARK 500 HIS A 331 C LEU A 332 N 0.179 REMARK 500 THR A 333 N THR A 333 CA 0.300 REMARK 500 THR A 333 CA THR A 333 C 0.317 REMARK 500 LEU A 332 C THR A 333 N 0.373 REMARK 500 SER A 334 N SER A 334 CA 0.206 REMARK 500 THR A 333 C SER A 334 N 0.220 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 80 CB - CG - OD1 ANGL. DEV. =-76.7 DEGREES REMARK 500 ASN A 80 CB - CG - ND2 ANGL. DEV. =-22.7 DEGREES REMARK 500 ALA A 153 C - N - CA ANGL. DEV. = 21.2 DEGREES REMARK 500 GLY A 207 CA - C - N ANGL. DEV. =-22.6 DEGREES REMARK 500 THR A 330 N - CA - CB ANGL. DEV. =-35.8 DEGREES REMARK 500 HIS A 331 N - CA - C ANGL. DEV. = 20.8 DEGREES REMARK 500 LEU A 332 N - CA - C ANGL. DEV. = 23.8 DEGREES REMARK 500 LEU A 332 CA - C - O ANGL. DEV. =-22.3 DEGREES REMARK 500 THR A 333 N - CA - C ANGL. DEV. = 27.5 DEGREES REMARK 500 LEU A 332 CA - C - N ANGL. DEV. = 21.9 DEGREES REMARK 500 THR A 333 C - N - CA ANGL. DEV. = 25.2 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 14 130.78 99.39 REMARK 500 THR A 29 -48.68 71.57 REMARK 500 ARG A 37 -169.83 149.17 REMARK 500 LYS A 44 -118.36 147.43 REMARK 500 MET A 52 148.53 86.70 REMARK 500 LYS A 120 151.72 94.80 REMARK 500 MET A 229 165.13 86.37 REMARK 500 SER A 247 -136.56 17.25 REMARK 500 SER A 329 105.94 132.99 REMARK 500 PHE A 336 -62.82 80.81 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 44 VAL A 45 -147.91 REMARK 500 THR A 330 HIS A 331 141.43 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FIN RELATED DB: PDB REMARK 900 CYCLIN A - CYCLIN-DEPENDENT KINASE 2 COMPLEX DBREF 1PF6 A 1 372 UNP P50750 CDK9_HUMAN 1 372 SEQRES 1 A 372 MET ALA LYS GLN TYR ASP SER VAL GLU CYS PRO PHE CYS SEQRES 2 A 372 ASP GLU VAL SER LYS TYR GLU LYS LEU ALA LYS ILE GLY SEQRES 3 A 372 GLN GLY THR PHE GLY GLU VAL PHE LYS ALA ARG HIS ARG SEQRES 4 A 372 LYS THR GLY GLN LYS VAL ALA LEU LYS LYS VAL LEU MET SEQRES 5 A 372 GLU ASN GLU LYS GLU GLY PHE PRO ILE THR ALA LEU ARG SEQRES 6 A 372 GLU ILE LYS ILE LEU GLN LEU LEU LYS HIS GLU ASN VAL SEQRES 7 A 372 VAL ASN LEU ILE GLU ILE CYS ARG THR LYS ALA SER PRO SEQRES 8 A 372 TYR ASN ARG CYS LYS GLY SER ILE TYR LEU VAL PHE ASP SEQRES 9 A 372 PHE CYS GLU HIS ASP LEU ALA GLY LEU LEU SER ASN VAL SEQRES 10 A 372 LEU VAL LYS PHE THR LEU SER GLU ILE LYS ARG VAL MET SEQRES 11 A 372 GLN MET LEU LEU ASN GLY LEU TYR TYR ILE HIS ARG ASN SEQRES 12 A 372 LYS ILE LEU HIS ARG ASP MET LYS ALA ALA ASN VAL LEU SEQRES 13 A 372 ILE THR ARG ASP GLY VAL LEU LYS LEU ALA ASP PHE GLY SEQRES 14 A 372 LEU ALA ARG ALA PHE SER LEU ALA LYS ASN SER GLN PRO SEQRES 15 A 372 ASN ARG TYR THR ASN ARG VAL VAL THR LEU TRP TYR ARG SEQRES 16 A 372 PRO PRO GLU LEU LEU LEU GLY GLU ARG ASP TYR GLY PRO SEQRES 17 A 372 PRO ILE ASP LEU TRP GLY ALA GLY CYS ILE MET ALA GLU SEQRES 18 A 372 MET TRP THR ARG SER PRO ILE MET GLN ALA ASN THR GLU SEQRES 19 A 372 GLN HIS GLN LEU ALA LEU ILE SER GLN LEU CYS GLY SER SEQRES 20 A 372 ILE THR PRO GLU VAL TRP PRO ASN VAL ASP ASN TYR GLU SEQRES 21 A 372 LEU TYR GLU LYS LEU GLU LEU VAL LYS GLY GLN LYS ARG SEQRES 22 A 372 LYS VAL LYS ASP ARG LEU LYS ALA TYR VAL ARG ASP PRO SEQRES 23 A 372 TYR ALA LEU ASP LEU ILE ASP LYS LEU LEU VAL LEU ASP SEQRES 24 A 372 PRO ALA GLN ARG ILE ASP SER ASP ASP ALA LEU ASN HIS SEQRES 25 A 372 ASP PHE PHE TRP SER ASP PRO MET PRO SER ASP LEU LYS SEQRES 26 A 372 GLY MET LEU SER THR HIS LEU THR SER MET PHE GLU TYR SEQRES 27 A 372 LEU ALA PRO PRO ARG ARG LYS GLY SER GLN ILE THR GLN SEQRES 28 A 372 GLN SER THR ASN GLN SER ARG ASN PRO ALA THR THR ASN SEQRES 29 A 372 GLN THR GLU PHE GLU ARG VAL PHE HELIX 1 1 PRO A 60 LEU A 73 1 14 HELIX 2 2 LEU A 110 LEU A 114 1 5 HELIX 3 3 THR A 122 ASN A 143 1 22 HELIX 4 4 THR A 191 ARG A 195 5 5 HELIX 5 5 PRO A 196 LEU A 201 1 6 HELIX 6 6 GLY A 207 THR A 224 1 18 HELIX 7 7 THR A 233 LEU A 238 1 6 HELIX 8 8 ALA A 239 GLN A 243 5 5 HELIX 9 9 TRP A 253 ASP A 257 5 5 HELIX 10 10 GLU A 260 LYS A 264 5 5 HELIX 11 11 ARG A 278 VAL A 283 1 6 HELIX 12 12 LEU A 291 VAL A 297 1 7 HELIX 13 13 ASP A 305 HIS A 312 1 8 HELIX 14 14 PRO A 341 ILE A 349 1 9 HELIX 15 15 THR A 354 ASN A 359 1 6 SHEET 1 A 5 LYS A 24 GLY A 26 0 SHEET 2 A 5 VAL A 33 ALA A 36 -1 O VAL A 33 N GLY A 26 SHEET 3 A 5 VAL A 45 VAL A 50 -1 O LEU A 47 N PHE A 34 SHEET 4 A 5 ILE A 99 ASP A 104 -1 O LEU A 101 N LYS A 48 SHEET 5 A 5 LEU A 81 CYS A 85 -1 N GLU A 83 O VAL A 102 SHEET 1 B 3 HIS A 108 ASP A 109 0 SHEET 2 B 3 LEU A 156 ILE A 157 -1 O ILE A 157 N HIS A 108 SHEET 3 B 3 LEU A 163 LYS A 164 -1 O LYS A 164 N LEU A 156 SHEET 1 C 2 ILE A 145 LEU A 146 0 SHEET 2 C 2 ARG A 172 ALA A 173 -1 O ARG A 172 N LEU A 146 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 127 0 0 15 10 0 0 6 0 0 0 29 END