HEADER SIGNALING PROTEIN 14-MAY-03 1PB5 TITLE NMR STRUCTURE OF A PROTOTYPE LNR MODULE FROM HUMAN NOTCH1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FIRST LNR MODULE; COMPND 5 SYNONYM: NOTCH 1, HN1, TRANSLOCATION-ASSOCIATED NOTCH COMPND 6 PROTEIN TAN-1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMM KEYWDS NOTCH SIGNALING, LIN12/NOTCH REPEAT, CALCIUM-BINDING DOMAIN, KEYWDS 2 PROTEIN MODULE, DISULFIDE BOND, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 16 MDLTYP MINIMIZED AVERAGE AUTHOR D.VARDAR,C.L.NORTH,C.SANCHEZ-IRIZARRY,J.C.ASTER,S.C.BLACKLOW REVDAT 2 24-FEB-09 1PB5 1 VERSN REVDAT 1 17-JUN-03 1PB5 0 JRNL AUTH D.VARDAR,C.L.NORTH,C.SANCHEZ-IRIZARRY,J.C.ASTER, JRNL AUTH 2 S.C.BLACKLOW JRNL TITL NUCLEAR MAGNETIC RESONANCE STRUCTURE OF A JRNL TITL 2 PROTOTYPE LIN12-NOTCH REPEAT MODULE FROM HUMAN JRNL TITL 3 NOTCH1 JRNL REF BIOCHEMISTRY V. 42 7061 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 12795601 JRNL DOI 10.1021/BI034156Y REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PB5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-03. REMARK 100 THE RCSB ID CODE IS RCSB019211. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 283 REMARK 210 PH : 6.5; 7.0 REMARK 210 IONIC STRENGTH : 10MM CA2+; 10MM CA2+, 50MM REMARK 210 PIPES REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM LNRA U-15N, 10MM CA2+, REMARK 210 0.5MM DSS PH 6.5; 1MM LNRA U- REMARK 210 15N,13C, 10MM CA2+, 0.5MM DSS REMARK 210 PH 6.5; 1.5MM LNRA U-15N,13C, REMARK 210 10 MM CA2+, 0.5MM DSS, 50 MM REMARK 210 DEUTERATED PIPES PH 7.0 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNCA, HNCOCA, 13C HSQC, 3D_ REMARK 210 15N-SEPARATED TOCSY, 2D TOCSY, REMARK 210 15N-HSQC, 15N-HMQC-J REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 500 MHZ, 400 MHZ REMARK 210 SPECTROMETER MODEL : DMX, UNITY REMARK 210 SPECTROMETER MANUFACTURER : BRUKER, VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR, NMRPIPE, NMRVIEW REMARK 210 5.0.4, CNS 1.1 REMARK 210 METHOD USED : DISTANCE GEOMETRY, TORSION REMARK 210 ANGLE DYNAMICS, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 16 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED,STRUCTURES WITH THE REMARK 210 LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 2 87.01 -69.93 REMARK 500 1 ALA A 3 16.78 -140.86 REMARK 500 1 CYS A 4 145.02 61.56 REMARK 500 1 VAL A 17 -139.35 -95.90 REMARK 500 1 CYS A 18 109.04 -162.39 REMARK 500 1 ASP A 30 28.14 46.43 REMARK 500 2 ALA A 3 16.18 -140.25 REMARK 500 2 CYS A 4 136.91 60.68 REMARK 500 2 VAL A 17 -141.53 -96.10 REMARK 500 2 CYS A 18 105.46 -162.06 REMARK 500 2 ASP A 30 27.33 47.06 REMARK 500 3 ALA A 3 16.86 -140.44 REMARK 500 3 CYS A 4 139.95 61.68 REMARK 500 3 VAL A 17 -141.98 -97.36 REMARK 500 3 ASP A 30 23.58 48.20 REMARK 500 4 GLU A 2 58.84 -102.05 REMARK 500 4 ALA A 3 17.62 -140.41 REMARK 500 4 CYS A 4 136.08 61.38 REMARK 500 4 VAL A 17 -141.48 -97.26 REMARK 500 4 CYS A 18 105.67 -161.03 REMARK 500 4 ASP A 30 23.30 48.80 REMARK 500 5 ALA A 3 16.78 -140.37 REMARK 500 5 CYS A 4 138.63 61.30 REMARK 500 5 VAL A 17 -141.65 -97.36 REMARK 500 5 ASP A 30 23.85 47.91 REMARK 500 6 ALA A 3 17.12 -140.68 REMARK 500 6 CYS A 4 145.64 62.02 REMARK 500 6 VAL A 17 -141.43 -95.94 REMARK 500 6 CYS A 18 105.72 -160.94 REMARK 500 6 ASP A 30 23.83 47.86 REMARK 500 7 ALA A 3 17.46 -140.41 REMARK 500 7 CYS A 4 138.08 61.66 REMARK 500 7 VAL A 17 -141.58 -95.74 REMARK 500 7 CYS A 18 105.46 -161.85 REMARK 500 7 ASP A 30 26.73 47.35 REMARK 500 8 GLU A 2 44.88 -95.29 REMARK 500 8 ALA A 3 18.67 -140.57 REMARK 500 8 CYS A 4 137.17 61.89 REMARK 500 8 VAL A 17 -139.79 -97.98 REMARK 500 8 CYS A 18 105.89 -163.18 REMARK 500 8 ASP A 30 28.12 46.11 REMARK 500 9 GLU A 2 56.74 -99.53 REMARK 500 9 ALA A 3 17.43 -140.67 REMARK 500 9 CYS A 4 144.14 62.27 REMARK 500 9 VAL A 17 -139.13 -97.95 REMARK 500 9 CYS A 18 106.25 -162.58 REMARK 500 9 ASP A 30 28.00 46.01 REMARK 500 10 ALA A 3 16.87 -140.31 REMARK 500 10 CYS A 4 138.59 61.07 REMARK 500 10 VAL A 17 -139.07 -98.28 REMARK 500 10 CYS A 18 106.26 -163.32 REMARK 500 10 GLN A 21 -8.98 -57.24 REMARK 500 10 ASP A 30 28.38 46.24 REMARK 500 11 ALA A 3 17.01 -140.35 REMARK 500 11 CYS A 4 138.35 61.36 REMARK 500 11 VAL A 17 -139.10 -97.82 REMARK 500 11 CYS A 18 106.82 -163.24 REMARK 500 11 ASP A 30 28.16 46.76 REMARK 500 12 GLU A 2 64.25 -101.06 REMARK 500 12 ALA A 3 17.93 -140.39 REMARK 500 12 CYS A 4 136.95 61.56 REMARK 500 12 VAL A 17 -141.67 -97.55 REMARK 500 12 ASP A 30 23.16 48.51 REMARK 500 13 ALA A 3 16.89 -140.32 REMARK 500 13 CYS A 4 134.13 61.58 REMARK 500 13 VAL A 17 -139.02 -98.54 REMARK 500 13 CYS A 18 106.35 -161.91 REMARK 500 13 TRP A 29 43.50 70.26 REMARK 500 13 ASP A 30 29.26 44.86 REMARK 500 14 ALA A 3 16.48 -140.33 REMARK 500 14 CYS A 4 142.10 61.58 REMARK 500 14 VAL A 17 -141.31 -95.16 REMARK 500 14 CYS A 18 105.82 -162.85 REMARK 500 14 ASP A 30 26.19 47.27 REMARK 500 15 ALA A 3 17.30 -140.52 REMARK 500 15 CYS A 4 139.11 61.54 REMARK 500 15 VAL A 17 -139.42 -97.72 REMARK 500 15 CYS A 18 106.11 -163.80 REMARK 500 15 ASP A 30 27.81 46.65 REMARK 500 16 ALA A 3 17.26 -140.31 REMARK 500 16 CYS A 4 138.05 61.19 REMARK 500 16 VAL A 17 -139.61 -97.83 REMARK 500 16 CYS A 18 106.15 -163.15 REMARK 500 16 ASP A 30 28.39 46.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 30 OD1 REMARK 620 2 ASP A 30 OD2 44.1 REMARK 620 3 ASP A 12 O 62.9 105.2 REMARK 620 4 ASN A 15 OD1 129.3 170.9 70.8 REMARK 620 5 ASP A 33 OD2 80.9 106.1 71.1 65.0 REMARK 620 6 CYS A 18 N 125.9 83.9 146.1 104.0 138.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 501 DBREF 1PB5 A 1 35 UNP P46531 NOTC1_HUMAN 1447 1481 SEQRES 1 A 35 GLU GLU ALA CYS GLU LEU PRO GLU CYS GLN GLU ASP ALA SEQRES 2 A 35 GLY ASN LYS VAL CYS SER LEU GLN CYS ASN ASN HIS ALA SEQRES 3 A 35 CYS GLY TRP ASP GLY GLY ASP CYS SER HET CA A 501 1 HETNAM CA CALCIUM ION FORMUL 2 CA CA 2+ HELIX 1 1 GLU A 8 ALA A 13 1 6 HELIX 2 2 GLY A 28 ASP A 33 5 6 SSBOND 1 CYS A 4 CYS A 27 1555 1555 2.03 SSBOND 2 CYS A 9 CYS A 22 1555 1555 2.03 SSBOND 3 CYS A 18 CYS A 34 1555 1555 2.03 LINK CA CA A 501 OD1 ASP A 30 1555 1555 2.90 LINK CA CA A 501 OD2 ASP A 30 1555 1555 2.95 LINK CA CA A 501 O ASP A 12 1555 1555 3.09 LINK CA CA A 501 OD1 ASN A 15 1555 1555 2.31 LINK CA CA A 501 OD2 ASP A 33 1555 1555 2.16 LINK CA CA A 501 N CYS A 18 1555 1555 3.23 SITE 1 AC1 6 ASP A 12 ASN A 15 VAL A 17 CYS A 18 SITE 2 AC1 6 ASP A 30 ASP A 33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 180 0 1 2 0 0 2 6 0 0 0 3 END