HEADER REPLICATION 10-MAY-03 1P9D TITLE HIGH-RESOLUTION STRUCTURE OF THE COMPLEX OF HHR23A TITLE 2 UBIQUITIN-LIKE DOMAIN AND THE C-TERMINAL UBIQUITIN- TITLE 3 INTERACTING MOTIF OF PROTEASOME SUBUNIT S5A COMPND MOL_ID: 1; COMPND 2 MOLECULE: 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4; COMPND 3 CHAIN: S; COMPND 4 FRAGMENT: C-TERMINAL UBIQUITIN-INTERACTING MOTIF, PUBS2; COMPND 5 SYNONYM: 26S PROTEASOME REGULATORY SUBUNIT S5A, RPN10, COMPND 6 MULTIUBIQUITIN CHAIN BINDING PROTEIN, ANTISECRETORY FACTOR- COMPND 7 1, AF, ASF; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG A; COMPND 11 CHAIN: U; COMPND 12 FRAGMENT: UBIQUITIN-LIKE DOMAIN; COMPND 13 SYNONYM: HHR23A; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PSMD4 OR MCB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: RAD23A; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-PEPTIDE COMPLEX, REPLICATION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR T.D.MUELLER,J.FEIGON REVDAT 2 24-FEB-09 1P9D 1 VERSN REVDAT 1 07-OCT-03 1P9D 0 JRNL AUTH T.D.MUELLER,J.FEIGON JRNL TITL STRUCTURAL DETERMINANTS FOR THE BINDING OF JRNL TITL 2 UBIQUITIN-LIKE DOMAINS TO THE PROTEASOME. JRNL REF EMBO J. V. 22 4634 2003 JRNL REFN ISSN 0261-4189 JRNL PMID 12970176 JRNL DOI 10.1093/EMBOJ/CDG467 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 2066 RESTRAINTS, 1999 ARE NOE-DERIVED DISTANCE RESTRAINTS, REMARK 3 OF WHICH 58 ARE INTERMOLECULAR. FOR THE S5A UBIQUITIN- REMARK 3 INTERACTING MOTIF ONLY THE RESIDUES 270 TO 301 WERE INCLUDED REMARK 3 IN THE STRUCTURE CALCULATIONS DUE TO DISORDER OF THE FLEXIBLE REMARK 3 N- AND C-TERMINI. REMARK 4 REMARK 4 1P9D COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-03. REMARK 100 THE RCSB ID CODE IS RCSB019171. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 150MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM S5A PEPTIDE UNLABELED, REMARK 210 2MM UBIQUITIN-LIKE DOMAIN OF REMARK 210 HHR23A U-15N,13C; 2MM S5A REMARK 210 PEPTIDE U-15N,13C, 2MM REMARK 210 UBIQUITIN-LIKE DOMAIN OF REMARK 210 HHR23A UNLABELED REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 15N-, REMARK 210 13C-FILTERED/EDITED 2D-NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.5, AURELIA 2.8.9, X REMARK 210 -PLOR 3.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 MET S 263 REMARK 465 THR S 264 REMARK 465 ILE S 265 REMARK 465 SER S 266 REMARK 465 GLN S 267 REMARK 465 GLN S 268 REMARK 465 GLU S 269 REMARK 465 GLN S 302 REMARK 465 ALA S 303 REMARK 465 GLU S 304 REMARK 465 SER S 305 REMARK 465 ALA S 306 REMARK 465 ASP S 307 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR S 273 45.55 -84.98 REMARK 500 1 PRO S 276 -77.48 -80.89 REMARK 500 1 ASP S 277 -15.32 84.14 REMARK 500 1 SER S 280 29.84 90.68 REMARK 500 1 THR S 282 -70.82 14.02 REMARK 500 1 LEU S 295 34.61 -87.28 REMARK 500 1 GLN S 296 -31.69 -34.62 REMARK 500 1 ALA S 298 35.41 -155.18 REMARK 500 1 GLU S 299 36.78 -161.51 REMARK 500 1 PHE S 300 64.21 38.07 REMARK 500 1 LEU U 10 -46.37 -5.85 REMARK 500 1 GLN U 11 -5.52 -54.98 REMARK 500 1 GLN U 12 -4.29 96.12 REMARK 500 1 ARG U 18 65.28 -109.61 REMARK 500 1 GLU U 23 174.67 -49.46 REMARK 500 1 VAL U 25 -6.34 58.17 REMARK 500 1 PHE U 41 36.71 -150.21 REMARK 500 1 VAL U 43 -37.75 -28.72 REMARK 500 1 ASP U 57 -16.59 -47.78 REMARK 500 1 ARG U 65 62.15 29.58 REMARK 500 2 ASP S 277 86.52 22.36 REMARK 500 2 SER S 279 35.34 104.78 REMARK 500 2 SER S 280 10.91 88.99 REMARK 500 2 THR S 282 -126.92 29.79 REMARK 500 2 GLU S 283 -68.51 -29.47 REMARK 500 2 PHE S 300 -76.52 77.75 REMARK 500 2 THR U 9 48.22 -85.73 REMARK 500 2 LEU U 10 -30.73 73.09 REMARK 500 2 GLN U 12 -9.27 95.45 REMARK 500 2 GLN U 13 99.75 -56.55 REMARK 500 2 PHE U 15 -165.34 -104.25 REMARK 500 2 ARG U 18 67.79 -110.17 REMARK 500 2 GLU U 23 -176.68 -49.56 REMARK 500 2 VAL U 25 -0.86 52.35 REMARK 500 2 PHE U 41 42.47 -150.75 REMARK 500 2 VAL U 43 -38.03 -28.82 REMARK 500 2 ALA U 44 -73.60 -60.12 REMARK 500 2 ARG U 65 57.15 32.76 REMARK 500 3 PRO S 276 -95.73 -75.69 REMARK 500 3 ASP S 277 -93.37 -125.66 REMARK 500 3 LEU S 278 -26.31 82.98 REMARK 500 3 SER S 279 47.87 -89.34 REMARK 500 3 SER S 280 -28.47 163.02 REMARK 500 3 MET S 281 -62.61 -5.49 REMARK 500 3 THR S 282 -165.59 77.11 REMARK 500 3 LEU S 295 37.50 -81.22 REMARK 500 3 GLN S 296 -30.64 -34.82 REMARK 500 3 ALA S 298 -63.06 87.60 REMARK 500 3 GLU S 299 -92.90 -127.75 REMARK 500 3 ILE U 5 171.34 -50.19 REMARK 500 3 LEU U 10 -44.71 -7.14 REMARK 500 3 GLN U 11 -7.72 -50.87 REMARK 500 3 GLN U 12 -9.40 104.27 REMARK 500 3 ARG U 18 70.58 -113.62 REMARK 500 3 GLU U 23 170.51 -42.57 REMARK 500 3 THR U 24 31.89 -94.93 REMARK 500 3 VAL U 25 -9.90 60.70 REMARK 500 3 VAL U 43 -34.18 -31.70 REMARK 500 3 ALA U 44 -71.86 -53.25 REMARK 500 3 ARG U 65 50.93 33.05 REMARK 500 3 VAL U 73 153.12 -49.37 REMARK 500 4 THR S 273 37.85 -99.50 REMARK 500 4 PRO S 276 -119.62 -84.91 REMARK 500 4 ASP S 277 -27.25 163.43 REMARK 500 4 LEU S 278 -65.89 80.15 REMARK 500 4 THR S 282 -152.91 48.01 REMARK 500 4 LEU S 295 43.53 -88.08 REMARK 500 4 GLN S 296 -30.88 -33.79 REMARK 500 4 ALA S 298 80.47 -17.74 REMARK 500 4 GLU S 299 85.10 52.47 REMARK 500 4 VAL U 3 -158.57 -103.40 REMARK 500 4 ILE U 5 176.40 -54.47 REMARK 500 4 LEU U 10 -47.56 -3.06 REMARK 500 4 GLN U 11 -7.51 -52.74 REMARK 500 4 GLN U 12 -8.01 102.89 REMARK 500 4 PHE U 15 -148.53 -133.24 REMARK 500 4 ARG U 18 -79.73 1.53 REMARK 500 4 MET U 19 177.42 61.74 REMARK 500 4 PRO U 21 10.39 -68.97 REMARK 500 4 GLU U 23 170.63 -47.08 REMARK 500 4 VAL U 25 -7.59 58.07 REMARK 500 4 LYS U 36 -60.76 -97.98 REMARK 500 4 PRO U 42 107.67 -55.58 REMARK 500 4 VAL U 43 -41.97 -23.67 REMARK 500 4 ARG U 65 58.16 20.22 REMARK 500 5 ARG S 272 74.74 82.41 REMARK 500 5 LEU S 275 89.55 -30.70 REMARK 500 5 SER S 279 35.56 -81.94 REMARK 500 5 SER S 280 -40.68 -157.44 REMARK 500 5 THR S 282 -73.14 17.88 REMARK 500 5 ALA S 298 -67.78 -121.98 REMARK 500 5 GLU S 299 105.12 75.21 REMARK 500 5 PHE S 300 -70.71 -50.05 REMARK 500 5 ILE U 5 171.38 -57.19 REMARK 500 5 LEU U 10 -47.94 -2.67 REMARK 500 5 GLN U 11 -6.93 -54.58 REMARK 500 5 GLN U 12 -7.41 101.65 REMARK 500 5 ARG U 18 -76.32 -42.35 REMARK 500 5 MET U 19 177.69 67.51 REMARK 500 5 GLU U 23 174.31 -48.37 REMARK 500 5 VAL U 25 -6.75 57.33 REMARK 500 5 VAL U 43 -37.69 -28.96 REMARK 500 5 ALA U 44 -81.41 -62.58 REMARK 500 5 ASP U 57 -16.15 -48.74 REMARK 500 5 ARG U 65 41.99 24.03 REMARK 500 5 ILE U 66 93.59 -66.68 REMARK 500 6 LEU S 275 91.46 -35.05 REMARK 500 6 SER S 279 38.74 -83.91 REMARK 500 6 SER S 280 -43.90 -167.00 REMARK 500 6 THR S 282 -68.64 11.33 REMARK 500 6 GLN S 296 38.02 27.48 REMARK 500 6 LEU U 10 -37.49 -14.83 REMARK 500 6 GLN U 11 -7.42 -52.46 REMARK 500 6 GLN U 12 -11.04 105.37 REMARK 500 6 ARG U 18 -70.59 -26.41 REMARK 500 6 MET U 19 176.30 67.62 REMARK 500 6 PRO U 21 -17.55 -47.68 REMARK 500 6 GLU U 23 175.42 -49.29 REMARK 500 6 VAL U 25 -5.99 55.72 REMARK 500 6 PHE U 41 40.09 -147.70 REMARK 500 6 PRO U 42 108.99 -56.05 REMARK 500 6 VAL U 43 -40.18 -29.64 REMARK 500 6 ARG U 65 39.97 26.46 REMARK 500 6 ILE U 66 93.87 -64.73 REMARK 500 7 LEU S 275 163.75 54.46 REMARK 500 7 ASP S 277 90.12 22.39 REMARK 500 7 SER S 279 35.45 91.98 REMARK 500 7 THR S 282 -118.38 22.25 REMARK 500 7 GLU S 283 -67.72 -26.75 REMARK 500 7 ALA S 298 -88.41 -112.86 REMARK 500 7 GLU S 299 -72.36 -43.69 REMARK 500 7 PHE S 300 85.21 56.65 REMARK 500 7 ALA U 2 172.83 54.08 REMARK 500 7 ILE U 5 160.84 -49.57 REMARK 500 7 THR U 9 47.79 -80.63 REMARK 500 7 LEU U 10 -30.96 72.85 REMARK 500 7 GLN U 12 -6.65 94.53 REMARK 500 7 ARG U 18 70.41 -107.56 REMARK 500 7 GLU U 23 -178.12 -54.25 REMARK 500 7 VAL U 25 -2.46 54.06 REMARK 500 7 LYS U 36 -60.34 -91.56 REMARK 500 7 PHE U 41 50.75 -150.63 REMARK 500 7 VAL U 43 -39.92 -31.66 REMARK 500 7 ALA U 44 -70.60 -54.83 REMARK 500 7 ASP U 58 31.61 -98.17 REMARK 500 7 ARG U 65 46.94 26.36 REMARK 500 7 ASN U 70 -156.50 -120.42 REMARK 500 8 PRO S 276 178.47 -59.35 REMARK 500 8 LEU S 278 -28.63 -37.13 REMARK 500 8 SER S 279 36.63 -81.98 REMARK 500 8 SER S 280 -33.54 -170.78 REMARK 500 8 THR S 282 -102.42 16.64 REMARK 500 8 GLU S 283 -65.73 -28.64 REMARK 500 8 LEU S 295 30.47 -85.61 REMARK 500 8 VAL U 3 -161.48 -105.64 REMARK 500 8 GLN U 12 -16.92 105.46 REMARK 500 8 GLN U 13 89.96 -49.88 REMARK 500 8 ARG U 18 -75.47 -27.95 REMARK 500 8 MET U 19 177.69 69.74 REMARK 500 8 GLU U 23 171.29 -50.74 REMARK 500 8 VAL U 25 -4.10 55.10 REMARK 500 8 VAL U 43 -41.89 -29.56 REMARK 500 8 ARG U 65 55.13 16.91 REMARK 500 8 VAL U 73 153.98 -46.87 REMARK 500 9 THR S 273 18.30 55.82 REMARK 500 9 LEU S 275 91.41 33.21 REMARK 500 9 ASP S 277 24.74 46.15 REMARK 500 9 LEU S 278 -75.09 28.87 REMARK 500 9 SER S 279 -34.57 -32.65 REMARK 500 9 THR S 282 -80.33 21.34 REMARK 500 9 LEU S 295 39.81 -85.71 REMARK 500 9 GLN S 296 -31.52 -33.17 REMARK 500 9 PHE S 300 82.91 -163.61 REMARK 500 9 LEU U 10 -49.56 -0.73 REMARK 500 9 GLN U 11 -7.88 -53.16 REMARK 500 9 GLN U 12 -8.12 103.04 REMARK 500 9 ARG U 18 -74.94 -34.87 REMARK 500 9 MET U 19 177.40 70.48 REMARK 500 9 GLU U 23 170.32 -53.04 REMARK 500 9 VAL U 25 -0.36 52.25 REMARK 500 9 PHE U 41 39.32 -154.84 REMARK 500 9 VAL U 43 -37.94 -32.83 REMARK 500 9 ALA U 44 -77.65 -57.20 REMARK 500 9 ARG U 65 48.04 20.66 REMARK 500 10 SER S 279 37.42 -83.50 REMARK 500 10 SER S 280 -44.05 -159.53 REMARK 500 10 THR S 282 -107.58 16.53 REMARK 500 10 GLU S 283 -68.74 -24.44 REMARK 500 10 LEU S 295 32.16 -78.84 REMARK 500 10 GLU S 299 -17.66 86.03 REMARK 500 10 PHE S 300 77.12 46.04 REMARK 500 10 ALA U 2 173.95 55.81 REMARK 500 10 ILE U 5 170.74 -57.66 REMARK 500 10 LEU U 10 -45.81 -4.56 REMARK 500 10 GLN U 11 -7.19 -52.76 REMARK 500 10 GLN U 12 -8.17 103.13 REMARK 500 10 PHE U 15 -158.98 -146.74 REMARK 500 10 ARG U 18 -74.85 -40.47 REMARK 500 10 MET U 19 177.32 66.51 REMARK 500 10 PRO U 21 5.31 -66.10 REMARK 500 10 GLU U 23 176.11 -58.41 REMARK 500 10 VAL U 25 -7.49 58.05 REMARK 500 10 PRO U 42 109.87 -57.52 REMARK 500 10 VAL U 43 -39.68 -26.79 REMARK 500 10 ARG U 65 49.65 21.92 REMARK 500 10 ASN U 70 -151.24 -124.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P98 RELATED DB: PDB REMARK 900 HIGH-RESOLUTION STRUCTURE OF THE UBIQUITIN-LIKE DOMAIN OF REMARK 900 HHR23A REMARK 900 RELATED ID: 1P9C RELATED DB: PDB REMARK 900 STRUCTURE OF THE C-TERMINAL UBIQUITIN-INTERACTING MOTIF OF REMARK 900 THE PROEASOME SUBUNIT S5A IN ITS UNBOUND CONFORMATION DBREF 1P9D U 1 78 UNP P54725 RD23A_HUMAN 1 78 DBREF 1P9D S 263 307 UNP P55036 PSD4_HUMAN 263 307 SEQRES 1 S 45 MET THR ILE SER GLN GLN GLU PHE GLY ARG THR GLY LEU SEQRES 2 S 45 PRO ASP LEU SER SER MET THR GLU GLU GLU GLN ILE ALA SEQRES 3 S 45 TYR ALA MET GLN MET SER LEU GLN GLY ALA GLU PHE GLY SEQRES 4 S 45 GLN ALA GLU SER ALA ASP SEQRES 1 U 78 MET ALA VAL THR ILE THR LEU LYS THR LEU GLN GLN GLN SEQRES 2 U 78 THR PHE LYS ILE ARG MET GLU PRO ASP GLU THR VAL LYS SEQRES 3 U 78 VAL LEU LYS GLU LYS ILE GLU ALA GLU LYS GLY ARG ASP SEQRES 4 U 78 ALA PHE PRO VAL ALA GLY GLN LYS LEU ILE TYR ALA GLY SEQRES 5 U 78 LYS ILE LEU SER ASP ASP VAL PRO ILE ARG ASP TYR ARG SEQRES 6 U 78 ILE ASP GLU LYS ASN PHE VAL VAL VAL MET VAL THR LYS HELIX 1 1 PRO S 276 SER S 280 5 5 HELIX 2 2 MET S 281 LEU S 295 1 15 HELIX 3 3 VAL U 25 GLY U 37 1 13 HELIX 4 4 PRO U 60 ARG U 65 5 6 SHEET 1 A 5 GLN U 13 ILE U 17 0 SHEET 2 A 5 ILE U 5 THR U 9 -1 N THR U 9 O GLN U 13 SHEET 3 A 5 VAL U 72 MET U 75 1 O VAL U 74 N LYS U 8 SHEET 4 A 5 LYS U 47 TYR U 50 -1 N LYS U 47 O MET U 75 SHEET 5 A 5 LYS U 53 SER U 56 -1 O LEU U 55 N LEU U 48 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 310 0 0 4 5 0 0 6 0 0 0 10 END