HEADER VIRAL PROTEIN 16-APR-03 1P30 TITLE REFINEMENT OF ADENOVIRUS TYPE 5 HEXON WITH CNS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEXON PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LATE PROTEIN 2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ADENOVIRUS 5; SOURCE 3 ORGANISM_TAXID: 28285 KEYWDS ADENOVIRUS, TYPE 5, HEXON, VIRUS, JELLYROLL, COAT PROTEIN, VIRAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.J.RUX,P.R.KUSER,R.M.BURNETT REVDAT 4 11-OCT-17 1P30 1 REMARK REVDAT 3 13-JUL-11 1P30 1 VERSN REVDAT 2 24-FEB-09 1P30 1 VERSN REVDAT 1 11-NOV-03 1P30 0 SPRSDE 11-NOV-03 1P30 1RUX JRNL AUTH J.J.RUX,P.R.KUSER,R.M.BURNETT JRNL TITL STRUCTURAL AND PHYLOGENETIC ANALYSIS OF ADENOVIRUS HEXONS BY JRNL TITL 2 USE OF HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHIC, MOLECULAR JRNL TITL 3 MODELING, AND SEQUENCE-BASED METHODS JRNL REF J.VIROL. V. 77 9553 2003 JRNL REFN ISSN 0022-538X JRNL PMID 12915569 JRNL DOI 10.1128/JVI.77.17.9553-9566.2003 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.J.RUX,R.M.BURNETT REMARK 1 TITL TYPE-SPECIFIC EPITOPE LOCATIONS REVEALED BY X-RAY REMARK 1 TITL 2 CRYSTALLOGRAPHIC STUDY OF ADENOVIRUS TYPE 5 HEXON. REMARK 1 REF MOL.THER. V. 1 18 2000 REMARK 1 REFN ISSN 1525-0016 REMARK 1 DOI 10.1006/MTHE.1999.0001 REMARK 1 REFERENCE 2 REMARK 1 AUTH F.K.ATHAPPILLY,R.MURALI,J.J.RUX,Z.CAI,R.M.BURNETT REMARK 1 TITL THE REFINED CRYSTAL STRUCTURE OF HEXON, THE MAJOR COAT REMARK 1 TITL 2 PROTEIN OF ADENOVIRUS TYPE 2, AT 2.9 A RESOLUTION. REMARK 1 REF J.MOL.BIOL. V. 242 430 1994 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1994.1593 REMARK 1 REFERENCE 3 REMARK 1 AUTH J.J.RUX,D.PASCOLINI,R.M.BURNETT REMARK 1 TITL LARGE-SCALE PURIFICATION AND CRYSTALLIZATION OF ADENOVIRUS REMARK 1 TITL 2 HEXON REMARK 1 REF ADENOVIRUS METHODS AND V. 21 259 1999 REMARK 1 REF 2 PROTOCOLS (IN: METHODS IN REMARK 1 REF 3 MOLECULAR MEDICINE, V.21) REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 36549 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1823 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4478 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 224 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.019 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7000 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 304 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.27 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.35 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.310 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.810 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.300 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.140 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.130 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.060 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 40.45 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1P30 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-03. REMARK 100 THE DEPOSITION ID IS D_1000018947. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-94 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 3.2 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : DOUBLE-MIRROR FOCUSING SYSTEM REMARK 200 (SUPPER) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS-NICOLET X100 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HARVARD DATA COLLECTION SYSTEM REMARK 200 FOR X-RAY AREA DETECTORS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36549 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.23400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS 0.9 REMARK 200 STARTING MODEL: PDB ENTRY 1RUX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 SODIUM CITRATE , PH 3.2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 75.35000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.35000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 75.35000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.35000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 75.35000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 75.35000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 75.35000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 75.35000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 75.35000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 75.35000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 75.35000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 75.35000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 75.35000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 75.35000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 75.35000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 75.35000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 75.35000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 75.35000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER GENERATED BY THE REMARK 300 OPERATIONS Z, X, Y AND Y, Z, X. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 48550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 83690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -280.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 THR A 2 REMARK 465 PRO A 3 REMARK 465 SER A 4 REMARK 465 GLU A 136 REMARK 465 ALA A 137 REMARK 465 ALA A 138 REMARK 465 THR A 139 REMARK 465 ALA A 140 REMARK 465 LEU A 141 REMARK 465 GLU A 142 REMARK 465 ILE A 143 REMARK 465 ASN A 144 REMARK 465 LEU A 145 REMARK 465 GLU A 146 REMARK 465 GLU A 147 REMARK 465 GLU A 148 REMARK 465 ASP A 149 REMARK 465 ASP A 150 REMARK 465 ASP A 151 REMARK 465 ASN A 152 REMARK 465 GLU A 153 REMARK 465 ASP A 154 REMARK 465 GLU A 155 REMARK 465 VAL A 156 REMARK 465 ASP A 157 REMARK 465 GLU A 158 REMARK 465 GLN A 159 REMARK 465 ALA A 160 REMARK 465 GLU A 161 REMARK 465 GLN A 162 REMARK 465 GLN A 163 REMARK 465 LYS A 164 REMARK 465 LYS A 251 REMARK 465 GLN A 252 REMARK 465 GLN A 253 REMARK 465 ASN A 254 REMARK 465 GLY A 255 REMARK 465 LYS A 256 REMARK 465 ALA A 271 REMARK 465 THR A 272 REMARK 465 ALA A 273 REMARK 465 GLY A 274 REMARK 465 ASN A 275 REMARK 465 GLY A 276 REMARK 465 ASP A 277 REMARK 465 ASN A 278 REMARK 465 LYS A 431 REMARK 465 THR A 432 REMARK 465 GLY A 433 REMARK 465 GLN A 434 REMARK 465 GLU A 435 REMARK 465 ASN A 436 REMARK 465 THR A 443 REMARK 465 GLU A 444 REMARK 465 GLY A 947 REMARK 465 ASN A 948 REMARK 465 ALA A 949 REMARK 465 THR A 950 REMARK 465 THR A 951 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 5 CG SD CE REMARK 470 MET A 6 CG SD CE REMARK 470 GLN A 29 CG CD OE1 NE2 REMARK 470 ARG A 32 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 ARG A 59 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 72 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 180 CG CD CE NZ REMARK 470 VAL A 187 CG1 CG2 REMARK 470 GLU A 188 CG CD OE1 OE2 REMARK 470 GLN A 190 CG CD OE1 NE2 REMARK 470 LYS A 193 CG CD CE NZ REMARK 470 LYS A 197 CG CD CE NZ REMARK 470 GLU A 207 CG CD OE1 OE2 REMARK 470 SER A 208 OG REMARK 470 GLU A 212 CG CD OE1 OE2 REMARK 470 THR A 213 OG1 CG2 REMARK 470 GLU A 214 CG CD OE1 OE2 REMARK 470 ILE A 215 CG1 CG2 CD1 REMARK 470 GLU A 242 CG CD OE1 OE2 REMARK 470 LEU A 257 CG CD1 CD2 REMARK 470 GLU A 258 CG CD OE1 OE2 REMARK 470 GLU A 262 CG CD OE1 OE2 REMARK 470 GLU A 270 CG CD OE1 OE2 REMARK 470 THR A 280 OG1 CG2 REMARK 470 LYS A 282 CG CD CE NZ REMARK 470 ILE A 305 CG1 CG2 CD1 REMARK 470 LYS A 306 CG CD CE NZ REMARK 470 GLU A 307 CG CD OE1 OE2 REMARK 470 ARG A 311 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 312 CG CD OE1 OE2 REMARK 470 SER A 340 OG REMARK 470 SER A 352 OG REMARK 470 GLN A 353 CG CD OE1 NE2 REMARK 470 LYS A 429 CG CD CE NZ REMARK 470 GLU A 439 CG CD OE1 OE2 REMARK 470 LYS A 440 CG CD CE NZ REMARK 470 SER A 446 OG REMARK 470 LYS A 448 CG CD CE NZ REMARK 470 LYS A 492 CG CD CE NZ REMARK 470 LYS A 685 CG CD CE NZ REMARK 470 SER A 747 OG REMARK 470 ASP A 749 CG OD1 OD2 REMARK 470 LYS A 809 CG CD CE NZ REMARK 470 LYS A 811 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 739 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 6 -62.52 -12.73 REMARK 500 PRO A 114 39.29 -73.23 REMARK 500 LYS A 126 -4.82 -57.81 REMARK 500 PHE A 199 -2.27 -147.48 REMARK 500 GLU A 214 92.99 68.17 REMARK 500 GLN A 353 -14.20 62.41 REMARK 500 ASN A 421 56.82 -92.39 REMARK 500 LYS A 440 -178.56 -55.52 REMARK 500 CYS A 515 -5.65 -57.34 REMARK 500 ASN A 518 50.98 38.40 REMARK 500 ASP A 603 31.48 -86.21 REMARK 500 ASN A 658 -4.42 69.65 REMARK 500 SER A 668 123.11 -35.07 REMARK 500 THR A 699 54.22 -116.50 REMARK 500 TYR A 712 14.88 -155.28 REMARK 500 SER A 727 -34.20 -176.12 REMARK 500 VAL A 748 -55.33 39.27 REMARK 500 ALA A 756 18.98 51.63 REMARK 500 ASP A 788 71.83 -101.86 REMARK 500 PRO A 833 39.56 -82.34 REMARK 500 TYR A 841 147.39 176.90 REMARK 500 CYS A 865 71.94 -160.13 REMARK 500 PHE A 878 -3.08 67.52 REMARK 500 ASP A 910 33.52 -75.82 REMARK 500 PRO A 943 -166.93 -68.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RUX RELATED DB: PDB REMARK 900 EARLIER STRUCTURE OF THE SAME PROTEIN. REMARK 900 RELATED ID: 1P2Z RELATED DB: PDB REMARK 900 CURRENT MODEL OF THE CLOSELY RELATED HUMAN ADENOVIRUS TYPE 2 HEXON. REMARK 900 RELATED ID: 1DHX RELATED DB: PDB REMARK 900 EARLIER STRUCTURE OF THE CLOSELY RELATED HUMAN ADENOVIRUS TYPE 2 REMARK 900 HEXON. REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE PROTEIN IS ACETYLATED AT THE N-TERMINUS. DBREF 1P30 A 1 951 UNP P04133 HEX_ADE05 1 951 SEQRES 1 A 951 ALA THR PRO SER MET MET PRO GLN TRP SER TYR MET HIS SEQRES 2 A 951 ILE SER GLY GLN ASP ALA SER GLU TYR LEU SER PRO GLY SEQRES 3 A 951 LEU VAL GLN PHE ALA ARG ALA THR GLU THR TYR PHE SER SEQRES 4 A 951 LEU ASN ASN LYS PHE ARG ASN PRO THR VAL ALA PRO THR SEQRES 5 A 951 HIS ASP VAL THR THR ASP ARG SER GLN ARG LEU THR LEU SEQRES 6 A 951 ARG PHE ILE PRO VAL ASP ARG GLU ASP THR ALA TYR SER SEQRES 7 A 951 TYR LYS ALA ARG PHE THR LEU ALA VAL GLY ASP ASN ARG SEQRES 8 A 951 VAL LEU ASP MET ALA SER THR TYR PHE ASP ILE ARG GLY SEQRES 9 A 951 VAL LEU ASP ARG GLY PRO THR PHE LYS PRO TYR SER GLY SEQRES 10 A 951 THR ALA TYR ASN ALA LEU ALA PRO LYS GLY ALA PRO ASN SEQRES 11 A 951 PRO CYS GLU TRP ASP GLU ALA ALA THR ALA LEU GLU ILE SEQRES 12 A 951 ASN LEU GLU GLU GLU ASP ASP ASP ASN GLU ASP GLU VAL SEQRES 13 A 951 ASP GLU GLN ALA GLU GLN GLN LYS THR HIS VAL PHE GLY SEQRES 14 A 951 GLN ALA PRO TYR SER GLY ILE ASN ILE THR LYS GLU GLY SEQRES 15 A 951 ILE GLN ILE GLY VAL GLU GLY GLN THR PRO LYS TYR ALA SEQRES 16 A 951 ASP LYS THR PHE GLN PRO GLU PRO GLN ILE GLY GLU SER SEQRES 17 A 951 GLN TRP TYR GLU THR GLU ILE ASN HIS ALA ALA GLY ARG SEQRES 18 A 951 VAL LEU LYS LYS THR THR PRO MET LYS PRO CYS TYR GLY SEQRES 19 A 951 SER TYR ALA LYS PRO THR ASN GLU ASN GLY GLY GLN GLY SEQRES 20 A 951 ILE LEU VAL LYS GLN GLN ASN GLY LYS LEU GLU SER GLN SEQRES 21 A 951 VAL GLU MET GLN PHE PHE SER THR THR GLU ALA THR ALA SEQRES 22 A 951 GLY ASN GLY ASP ASN LEU THR PRO LYS VAL VAL LEU TYR SEQRES 23 A 951 SER GLU ASP VAL ASP ILE GLU THR PRO ASP THR HIS ILE SEQRES 24 A 951 SER TYR MET PRO THR ILE LYS GLU GLY ASN SER ARG GLU SEQRES 25 A 951 LEU MET GLY GLN GLN SER MET PRO ASN ARG PRO ASN TYR SEQRES 26 A 951 ILE ALA PHE ARG ASP ASN PHE ILE GLY LEU MET TYR TYR SEQRES 27 A 951 ASN SER THR GLY ASN MET GLY VAL LEU ALA GLY GLN ALA SEQRES 28 A 951 SER GLN LEU ASN ALA VAL VAL ASP LEU GLN ASP ARG ASN SEQRES 29 A 951 THR GLU LEU SER TYR GLN LEU LEU LEU ASP SER ILE GLY SEQRES 30 A 951 ASP ARG THR ARG TYR PHE SER MET TRP ASN GLN ALA VAL SEQRES 31 A 951 ASP SER TYR ASP PRO ASP VAL ARG ILE ILE GLU ASN HIS SEQRES 32 A 951 GLY THR GLU ASP GLU LEU PRO ASN TYR CYS PHE PRO LEU SEQRES 33 A 951 GLY GLY VAL ILE ASN THR GLU THR LEU THR LYS VAL LYS SEQRES 34 A 951 PRO LYS THR GLY GLN GLU ASN GLY TRP GLU LYS ASP ALA SEQRES 35 A 951 THR GLU PHE SER ASP LYS ASN GLU ILE ARG VAL GLY ASN SEQRES 36 A 951 ASN PHE ALA MET GLU ILE ASN LEU ASN ALA ASN LEU TRP SEQRES 37 A 951 ARG ASN PHE LEU TYR SER ASN ILE ALA LEU TYR LEU PRO SEQRES 38 A 951 ASP LYS LEU LYS TYR SER PRO SER ASN VAL LYS ILE SER SEQRES 39 A 951 ASP ASN PRO ASN THR TYR ASP TYR MET ASN LYS ARG VAL SEQRES 40 A 951 VAL ALA PRO GLY LEU VAL ASP CYS TYR ILE ASN LEU GLY SEQRES 41 A 951 ALA ARG TRP SER LEU ASP TYR MET ASP ASN VAL ASN PRO SEQRES 42 A 951 PHE ASN HIS HIS ARG ASN ALA GLY LEU ARG TYR ARG SER SEQRES 43 A 951 MET LEU LEU GLY ASN GLY ARG TYR VAL PRO PHE HIS ILE SEQRES 44 A 951 GLN VAL PRO GLN LYS PHE PHE ALA ILE LYS ASN LEU LEU SEQRES 45 A 951 LEU LEU PRO GLY SER TYR THR TYR GLU TRP ASN PHE ARG SEQRES 46 A 951 LYS ASP VAL ASN MET VAL LEU GLN SER SER LEU GLY ASN SEQRES 47 A 951 ASP LEU ARG VAL ASP GLY ALA SER ILE LYS PHE ASP SER SEQRES 48 A 951 ILE CYS LEU TYR ALA THR PHE PHE PRO MET ALA HIS ASN SEQRES 49 A 951 THR ALA SER THR LEU GLU ALA MET LEU ARG ASN ASP THR SEQRES 50 A 951 ASN ASP GLN SER PHE ASN ASP TYR LEU SER ALA ALA ASN SEQRES 51 A 951 MET LEU TYR PRO ILE PRO ALA ASN ALA THR ASN VAL PRO SEQRES 52 A 951 ILE SER ILE PRO SER ARG ASN TRP ALA ALA PHE ARG GLY SEQRES 53 A 951 TRP ALA PHE THR ARG LEU LYS THR LYS GLU THR PRO SER SEQRES 54 A 951 LEU GLY SER GLY TYR ASP PRO TYR TYR THR TYR SER GLY SEQRES 55 A 951 SER ILE PRO TYR LEU ASP GLY THR PHE TYR LEU ASN HIS SEQRES 56 A 951 THR PHE LYS LYS VAL ALA ILE THR PHE ASP SER SER VAL SEQRES 57 A 951 SER TRP PRO GLY ASN ASP ARG LEU LEU THR PRO ASN GLU SEQRES 58 A 951 PHE GLU ILE LYS ARG SER VAL ASP GLY GLU GLY TYR ASN SEQRES 59 A 951 VAL ALA GLN CYS ASN MET THR LYS ASP TRP PHE LEU VAL SEQRES 60 A 951 GLN MET LEU ALA ASN TYR ASN ILE GLY TYR GLN GLY PHE SEQRES 61 A 951 TYR ILE PRO GLU SER TYR LYS ASP ARG MET TYR SER PHE SEQRES 62 A 951 PHE ARG ASN PHE GLN PRO MET SER ARG GLN VAL VAL ASP SEQRES 63 A 951 ASP THR LYS TYR LYS ASP TYR GLN GLN VAL GLY ILE LEU SEQRES 64 A 951 HIS GLN HIS ASN ASN SER GLY PHE VAL GLY TYR LEU ALA SEQRES 65 A 951 PRO THR MET ARG GLU GLY GLN ALA TYR PRO ALA ASN PHE SEQRES 66 A 951 PRO TYR PRO LEU ILE GLY LYS THR ALA VAL ASP SER ILE SEQRES 67 A 951 THR GLN LYS LYS PHE LEU CYS ASP ARG THR LEU TRP ARG SEQRES 68 A 951 ILE PRO PHE SER SER ASN PHE MET SER MET GLY ALA LEU SEQRES 69 A 951 THR ASP LEU GLY GLN ASN LEU LEU TYR ALA ASN SER ALA SEQRES 70 A 951 HIS ALA LEU ASP MET THR PHE GLU VAL ASP PRO MET ASP SEQRES 71 A 951 GLU PRO THR LEU LEU TYR VAL LEU PHE GLU VAL PHE ASP SEQRES 72 A 951 VAL VAL ARG VAL HIS ARG PRO HIS ARG GLY VAL ILE GLU SEQRES 73 A 951 THR VAL TYR LEU ARG THR PRO PHE SER ALA GLY ASN ALA SEQRES 74 A 951 THR THR FORMUL 2 HOH *304(H2 O) HELIX 1 1 MET A 5 MET A 12 1 8 HELIX 2 2 ASP A 18 LEU A 23 1 6 HELIX 3 3 SER A 24 GLU A 35 1 12 HELIX 4 4 LEU A 40 PHE A 44 5 5 HELIX 5 5 SER A 310 GLN A 316 5 7 HELIX 6 6 ASP A 330 ILE A 333 5 4 HELIX 7 7 SER A 340 MET A 344 5 5 HELIX 8 8 ASN A 364 GLY A 377 1 14 HELIX 9 9 PHE A 383 ASN A 387 5 5 HELIX 10 10 ASP A 394 ILE A 399 1 6 HELIX 11 11 ASN A 462 ILE A 476 1 15 HELIX 12 12 ALA A 477 LEU A 480 5 4 HELIX 13 13 PRO A 481 LYS A 485 5 5 HELIX 14 14 THR A 499 ARG A 506 1 8 HELIX 15 15 ALA A 509 ASP A 514 5 6 HELIX 16 16 LEU A 525 ASN A 530 1 6 HELIX 17 17 ASN A 539 GLY A 550 1 12 HELIX 18 18 ASP A 587 VAL A 591 1 5 HELIX 19 19 ALA A 622 ARG A 634 1 13 HELIX 20 20 ASN A 635 ASP A 639 5 5 HELIX 21 21 LYS A 685 THR A 687 5 3 HELIX 22 22 ILE A 704 GLY A 709 1 6 HELIX 23 23 LEU A 713 HIS A 715 5 3 HELIX 24 24 GLY A 750 ASN A 754 5 5 HELIX 25 25 THR A 761 ASN A 774 1 14 HELIX 26 26 GLU A 784 ASP A 788 5 5 HELIX 27 27 SER A 792 ASN A 796 1 5 HELIX 28 28 GLY A 817 GLN A 821 5 5 HELIX 29 29 ASP A 886 GLN A 889 5 4 HELIX 30 30 ASN A 890 ASN A 895 1 6 SHEET 1 A 4 THR A 64 PHE A 67 0 SHEET 2 A 4 SER A 606 THR A 617 -1 O ALA A 616 N LEU A 65 SHEET 3 A 4 THR A 98 ASP A 107 -1 N ASP A 107 O SER A 606 SHEET 4 A 4 TYR A 554 VAL A 561 -1 O VAL A 555 N LEU A 106 SHEET 1 B 4 ASP A 71 ASP A 74 0 SHEET 2 B 4 SER A 78 VAL A 87 -1 O ARG A 82 N ASP A 71 SHEET 3 B 4 GLY A 576 ARG A 585 -1 O TYR A 578 N LEU A 85 SHEET 4 B 4 VAL A 346 GLY A 349 -1 N ALA A 348 O THR A 579 SHEET 1 C 2 LEU A 93 ASP A 94 0 SHEET 2 C 2 LEU A 572 LEU A 573 -1 O LEU A 573 N LEU A 93 SHEET 1 D 2 CYS A 132 TRP A 134 0 SHEET 2 D 2 HIS A 166 PHE A 168 -1 O HIS A 166 N TRP A 134 SHEET 1 E 4 TYR A 173 SER A 174 0 SHEET 2 E 4 ALA A 218 LEU A 223 -1 O ALA A 219 N TYR A 173 SHEET 3 E 4 VAL A 283 GLU A 288 1 O TYR A 286 N GLY A 220 SHEET 4 E 4 GLU A 262 PHE A 266 -1 N PHE A 266 O VAL A 283 SHEET 1 F 3 ILE A 178 THR A 179 0 SHEET 2 F 3 GLY A 182 GLU A 188 -1 O GLY A 182 N THR A 179 SHEET 3 F 3 THR A 191 TYR A 194 -1 O LYS A 193 N GLY A 186 SHEET 1 G 2 TYR A 236 ALA A 237 0 SHEET 2 G 2 ILE A 292 GLU A 293 -1 O GLU A 293 N TYR A 236 SHEET 1 H 2 THR A 297 TYR A 301 0 SHEET 2 H 2 GLN A 317 PRO A 320 -1 O MET A 319 N HIS A 298 SHEET 1 I 2 ILE A 326 PHE A 328 0 SHEET 2 I 2 LEU A 592 SER A 594 -1 O GLN A 593 N ALA A 327 SHEET 1 J 2 ILE A 400 GLU A 401 0 SHEET 2 J 2 ARG A 522 TRP A 523 -1 O TRP A 523 N ILE A 400 SHEET 1 K 2 TYR A 412 CYS A 413 0 SHEET 2 K 2 MET A 459 GLU A 460 -1 O MET A 459 N CYS A 413 SHEET 1 L 2 GLU A 423 LEU A 425 0 SHEET 2 L 2 ASN A 449 ILE A 451 -1 O ILE A 451 N GLU A 423 SHEET 1 M 2 VAL A 428 LYS A 429 0 SHEET 2 M 2 GLU A 439 LYS A 440 -1 O GLU A 439 N LYS A 429 SHEET 1 N 3 GLN A 640 ASN A 643 0 SHEET 2 N 3 PHE A 922 HIS A 928 -1 O VAL A 927 N GLN A 640 SHEET 3 N 3 GLU A 936 THR A 942 -1 O GLU A 936 N HIS A 928 SHEET 1 O 4 ALA A 648 ILE A 655 0 SHEET 2 O 4 THR A 913 GLU A 920 -1 O LEU A 915 N TYR A 653 SHEET 3 O 4 GLY A 676 LYS A 683 -1 N ALA A 678 O LEU A 918 SHEET 4 O 4 TRP A 870 PRO A 873 -1 O ILE A 872 N TRP A 677 SHEET 1 P 4 ASN A 661 ARG A 669 0 SHEET 2 P 4 HIS A 898 VAL A 906 -1 O MET A 902 N ILE A 664 SHEET 3 P 4 PHE A 717 PHE A 724 -1 N THR A 723 O ASP A 901 SHEET 4 P 4 VAL A 728 TRP A 730 -1 O VAL A 728 N PHE A 724 SHEET 1 Q 4 ASN A 661 ARG A 669 0 SHEET 2 Q 4 HIS A 898 VAL A 906 -1 O MET A 902 N ILE A 664 SHEET 3 Q 4 PHE A 717 PHE A 724 -1 N THR A 723 O ASP A 901 SHEET 4 Q 4 PHE A 742 GLU A 743 -1 O PHE A 742 N VAL A 720 SHEET 1 R 2 PHE A 797 VAL A 805 0 SHEET 2 R 2 SER A 857 CYS A 865 -1 O LYS A 862 N MET A 800 CISPEP 1 GLN A 200 PRO A 201 0 -0.30 CISPEP 2 TRP A 730 PRO A 731 0 0.20 CISPEP 3 PHE A 845 PRO A 846 0 -0.15 CISPEP 4 THR A 942 PRO A 943 0 -0.32 CRYST1 150.700 150.700 150.700 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006636 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006636 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006636 0.00000 MASTER 473 0 0 30 50 0 0 6 0 0 0 74 END