HEADER TRANSCRIPTION 07-APR-03 1OZ2 TITLE CRYSTAL STRUCTURE OF 3-MBT REPEATS OF LETHAL (3) MALIGNANT BRAIN TUMOR TITLE 2 (NATIVE-II) AT 1.55 ANGSTROM COMPND MOL_ID: 1; COMPND 2 MOLECULE: LETHAL(3)MALIGNANT BRAIN TUMOR-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 197-527; COMPND 5 SYNONYM: L3, MBT-LIKE, L3, MBT PROTEIN HOMOLOG, H-L3, MBT PROTEIN, H- COMPND 6 L3, MBT; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 TISSUE: BRAIN; SOURCE 6 GENE: L3MBTL OR L3MBT OR KIAA0681; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21-DE(3)RP; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-3 KEYWDS PROPELLER, TRANSCRIPTION REPRESSOR, THREE MALIGNANT BRAIN TUMOR KEYWDS 2 REPEATS, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR W.K.WANG,V.TERESHKO,P.BOCCUNI,D.MACGROGAN,S.D.NIMER,D.J.PATEL REVDAT 3 13-JUL-11 1OZ2 1 VERSN REVDAT 2 24-FEB-09 1OZ2 1 VERSN REVDAT 1 19-AUG-03 1OZ2 0 JRNL AUTH W.K.WANG,V.TERESHKO,P.BOCCUNI,D.MACGROGAN,S.D.NIMER, JRNL AUTH 2 D.J.PATEL JRNL TITL MALIGNANT BRAIN TUMOR REPEATS: A THREE-LEAVED PROPELLER JRNL TITL 2 ARCHITECTURE WITH LIGAND/PEPTIDE BINDING POCKETS. JRNL REF STRUCTURE V. 11 775 2003 JRNL REFN ISSN 0969-2126 JRNL PMID 12842041 JRNL DOI 10.1016/S0969-2126(03)00127-8 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.13 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 65305 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3487 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4700 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 250 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2622 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 505 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.074 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.077 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.046 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.250 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2787 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2326 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3809 ; 1.643 ; 1.930 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5467 ; 0.935 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 323 ; 6.593 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 374 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3056 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 567 ; 0.009 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 535 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2659 ; 0.260 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1407 ; 0.091 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 329 ; 0.172 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.136 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 67 ; 0.314 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 41 ; 0.205 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1633 ; 1.143 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2652 ; 2.089 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1154 ; 2.948 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1157 ; 4.474 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 204 A 527 REMARK 3 ORIGIN FOR THE GROUP (A): 5.6130 14.6620 18.6400 REMARK 3 T TENSOR REMARK 3 T11: 0.0537 T22: 0.0017 REMARK 3 T33: 0.0812 T12: -0.0088 REMARK 3 T13: 0.0075 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.6159 L22: 0.2996 REMARK 3 L33: 0.2467 L12: 0.0957 REMARK 3 L13: 0.1182 L23: 0.0799 REMARK 3 S TENSOR REMARK 3 S11: 0.0235 S12: -0.0068 S13: 0.0845 REMARK 3 S21: 0.0119 S22: -0.0172 S23: 0.0019 REMARK 3 S31: -0.0211 S32: 0.0095 S33: -0.0063 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1OZ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-03. REMARK 100 THE RCSB ID CODE IS RCSB018822. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.57200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1OYX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG MME 5000, MES, DTT, AMMONIUM REMARK 280 SULFATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 43.34000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.70150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.34000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.70150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY WITH THE SYMMETRY RELATED MOLECULE REMARK 300 IS GENERATED BY THE OPERATION: -X, -Y, Z; X+1/2, -Y+1/2, -Z; -X+1/ REMARK 300 2, Y+1/2, -Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1228 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1240 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1229 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 197 REMARK 465 ALA A 198 REMARK 465 THR A 199 REMARK 465 GLY A 200 REMARK 465 GLU A 201 REMARK 465 LYS A 202 REMARK 465 LYS A 203 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 390 CB CYS A 390 SG -0.183 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 227 CB - CG - OD2 ANGL. DEV. = 7.8 DEGREES REMARK 500 ASP A 289 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 391 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 467 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 244 -169.19 -161.78 REMARK 500 HIS A 251 67.48 -151.50 REMARK 500 HIS A 331 22.63 -74.98 REMARK 500 GLN A 336 33.31 -148.51 REMARK 500 ASP A 372 -120.27 50.92 REMARK 500 PRO A 417 108.70 -54.82 REMARK 500 ASP A 418 65.29 76.32 REMARK 500 ASN A 452 -11.88 84.48 REMARK 500 LEU A 455 -169.07 -160.54 REMARK 500 ARG A 521 17.05 56.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 872 DISTANCE = 5.01 ANGSTROMS REMARK 525 HOH A 893 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A 902 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH A 904 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A 964 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A1002 DISTANCE = 5.76 ANGSTROMS REMARK 525 HOH A1015 DISTANCE = 5.23 ANGSTROMS REMARK 525 HOH A1057 DISTANCE = 5.07 ANGSTROMS REMARK 525 HOH A1059 DISTANCE = 5.74 ANGSTROMS REMARK 525 HOH A1065 DISTANCE = 7.43 ANGSTROMS REMARK 525 HOH A1069 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH A1111 DISTANCE = 5.12 ANGSTROMS REMARK 525 HOH A1240 DISTANCE = 6.97 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 21 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 22 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 23 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 24 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OYX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 3-MBT REPEATS OF LETHAL (3) MALIGNANT REMARK 900 BRAIN TUMOR (SELENO-MET) AT 1.85 ANGSTROM REMARK 900 RELATED ID: 1OZ3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 3-MBT REPEATS OF LETHAL (3) MALIGNANT REMARK 900 BRAIN TUMOR (NATIVE-I) AT 1.85 ANGSTROM REMARK 999 REMARK 999 SEQUENCE REMARK 999 THESE SEQUENCE CONFLICTS (L320, R321 --> M320, C321) REMARK 999 AND (L332 --> M332) ARE NOTED IN THE SWISS-PROT REMARK 999 DATABASE ENTRY (ACCESSION Q9Y468). DBREF 1OZ2 A 197 527 UNP Q9Y468 LMBTL_HUMAN 197 527 SEQRES 1 A 331 PRO ALA THR GLY GLU LYS LYS GLU CYS TRP SER TRP GLU SEQRES 2 A 331 SER TYR LEU GLU GLU GLN LYS ALA ILE THR ALA PRO VAL SEQRES 3 A 331 SER LEU PHE GLN ASP SER GLN ALA VAL THR HIS ASN LYS SEQRES 4 A 331 ASN GLY PHE LYS LEU GLY MET LYS LEU GLU GLY ILE ASP SEQRES 5 A 331 PRO GLN HIS PRO SER MET TYR PHE ILE LEU THR VAL ALA SEQRES 6 A 331 GLU VAL CYS GLY TYR ARG LEU ARG LEU HIS PHE ASP GLY SEQRES 7 A 331 TYR SER GLU CYS HIS ASP PHE TRP VAL ASN ALA ASN SER SEQRES 8 A 331 PRO ASP ILE HIS PRO ALA GLY TRP PHE GLU LYS THR GLY SEQRES 9 A 331 HIS LYS LEU GLN PRO PRO LYS GLY TYR LYS GLU GLU GLU SEQRES 10 A 331 PHE SER TRP SER GLN TYR LEU ARG SER THR ARG ALA GLN SEQRES 11 A 331 ALA ALA PRO LYS HIS LEU PHE VAL SER GLN SER HIS SER SEQRES 12 A 331 PRO PRO PRO LEU GLY PHE GLN VAL GLY MET LYS LEU GLU SEQRES 13 A 331 ALA VAL ASP ARG MET ASN PRO SER LEU VAL CYS VAL ALA SEQRES 14 A 331 SER VAL THR ASP VAL VAL ASP SER ARG PHE LEU VAL HIS SEQRES 15 A 331 PHE ASP ASN TRP ASP ASP THR TYR ASP TYR TRP CYS ASP SEQRES 16 A 331 PRO SER SER PRO TYR ILE HIS PRO VAL GLY TRP CYS GLN SEQRES 17 A 331 LYS GLN GLY LYS PRO LEU THR PRO PRO GLN ASP TYR PRO SEQRES 18 A 331 ASP PRO ASP ASN PHE CYS TRP GLU LYS TYR LEU GLU GLU SEQRES 19 A 331 THR GLY ALA SER ALA VAL PRO THR TRP ALA PHE LYS VAL SEQRES 20 A 331 ARG PRO PRO HIS SER PHE LEU VAL ASN MET LYS LEU GLU SEQRES 21 A 331 ALA VAL ASP ARG ARG ASN PRO ALA LEU ILE ARG VAL ALA SEQRES 22 A 331 SER VAL GLU ASP VAL GLU ASP HIS ARG ILE LYS ILE HIS SEQRES 23 A 331 PHE ASP GLY TRP SER HIS GLY TYR ASP PHE TRP ILE ASP SEQRES 24 A 331 ALA ASP HIS PRO ASP ILE HIS PRO ALA GLY TRP CYS SER SEQRES 25 A 331 LYS THR GLY HIS PRO LEU GLN PRO PRO LEU GLY PRO ARG SEQRES 26 A 331 GLU PRO SER SER ALA SER HET SO4 A 601 5 HET SO4 A 602 5 HET SO4 A 603 5 HET SO4 A 600 5 HET MES A 21 12 HET MES A 22 12 HET MES A 23 12 HET MES A 24 12 HETNAM SO4 SULFATE ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 2 SO4 4(O4 S 2-) FORMUL 6 MES 4(C6 H13 N O4 S) FORMUL 10 HOH *505(H2 O) HELIX 1 1 SER A 207 LYS A 216 1 10 HELIX 2 2 PRO A 221 PHE A 225 5 5 HELIX 3 3 GLN A 226 VAL A 231 1 6 HELIX 4 4 SER A 276 ASP A 280 5 5 HELIX 5 5 GLY A 294 GLY A 300 1 7 HELIX 6 6 LYS A 310 PHE A 314 5 5 HELIX 7 7 SER A 315 ARG A 324 1 10 HELIX 8 8 PRO A 329 PHE A 333 5 5 HELIX 9 9 ASP A 383 ASP A 387 5 5 HELIX 10 10 GLY A 401 GLY A 407 1 7 HELIX 11 11 ASP A 418 PHE A 422 5 5 HELIX 12 12 CYS A 423 GLY A 432 1 10 HELIX 13 13 PRO A 437 PHE A 441 5 5 HELIX 14 14 SER A 487 ASP A 491 5 5 HELIX 15 15 GLY A 505 GLY A 511 1 7 SHEET 1 A 5 PHE A 281 ASN A 284 0 SHEET 2 A 5 ARG A 267 PHE A 272 -1 N LEU A 270 O PHE A 281 SHEET 3 A 5 HIS A 251 CYS A 264 -1 N THR A 259 O HIS A 271 SHEET 4 A 5 LYS A 243 ASP A 248 -1 N GLY A 246 O PHE A 256 SHEET 5 A 5 ILE A 290 HIS A 291 -1 O HIS A 291 N GLU A 245 SHEET 1 B 4 PHE A 281 ASN A 284 0 SHEET 2 B 4 ARG A 267 PHE A 272 -1 N LEU A 270 O PHE A 281 SHEET 3 B 4 HIS A 251 CYS A 264 -1 N THR A 259 O HIS A 271 SHEET 4 B 4 LEU A 303 GLN A 304 1 O GLN A 304 N TYR A 255 SHEET 1 C 5 TYR A 388 CYS A 390 0 SHEET 2 C 5 ARG A 374 PHE A 379 -1 N VAL A 377 O TYR A 388 SHEET 3 C 5 VAL A 362 VAL A 371 -1 N ASP A 369 O LEU A 376 SHEET 4 C 5 LYS A 350 VAL A 354 -1 N ALA A 353 O CYS A 363 SHEET 5 C 5 ILE A 397 HIS A 398 -1 O HIS A 398 N GLU A 352 SHEET 1 D 4 TYR A 388 CYS A 390 0 SHEET 2 D 4 ARG A 374 PHE A 379 -1 N VAL A 377 O TYR A 388 SHEET 3 D 4 VAL A 362 VAL A 371 -1 N ASP A 369 O LEU A 376 SHEET 4 D 4 LEU A 410 THR A 411 1 O THR A 411 N VAL A 362 SHEET 1 E 5 PHE A 492 ASP A 495 0 SHEET 2 E 5 ARG A 478 PHE A 483 -1 N ILE A 481 O PHE A 492 SHEET 3 E 5 ILE A 466 VAL A 474 -1 N ASP A 473 O LYS A 480 SHEET 4 E 5 LYS A 454 VAL A 458 -1 N LEU A 455 O ALA A 469 SHEET 5 E 5 ILE A 501 HIS A 502 -1 O HIS A 502 N GLU A 456 SITE 1 AC1 9 SER A 207 TRP A 208 ARG A 321 SER A 508 SITE 2 AC1 9 HOH A 614 HOH A 668 HOH A 681 HOH A 861 SITE 3 AC1 9 HOH A1019 SITE 1 AC2 3 ARG A 460 HIS A 498 HOH A 968 SITE 1 AC3 6 HIS A 378 ASP A 380 ASN A 381 HOH A 965 SITE 2 AC3 6 HOH A1043 HOH A1241 SITE 1 AC4 5 HIS A 271 ASP A 273 GLY A 274 TYR A 275 SITE 2 AC4 5 HOH A 810 SITE 1 AC5 8 ASP A 355 ASN A 358 CYS A 363 PHE A 379 SITE 2 AC5 8 TRP A 382 TYR A 386 LYS A 480 HOH A 705 SITE 1 AC6 9 TRP A 382 ASP A 383 TYR A 386 GLN A 414 SITE 2 AC6 9 VAL A 451 ASN A 452 GLU A 472 HIS A 488 SITE 3 AC6 9 HOH A 970 SITE 1 AC7 8 CYS A 278 ASP A 459 ARG A 461 PHE A 483 SITE 2 AC7 8 TRP A 486 TYR A 490 HOH A 812 HOH A 982 SITE 1 AC8 6 CYS A 205 TRP A 206 SER A 207 SER A 210 SITE 2 AC8 6 TYR A 211 GLU A 214 CRYST1 86.680 93.403 58.578 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011537 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010706 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017071 0.00000 MASTER 413 0 8 15 23 0 17 6 0 0 0 26 END