HEADER SUGAR BINDING PROTEIN 25-MAR-03 1OUW TITLE CRYSTAL STRUCTURE OF CALYSTEGIA SEPIUM AGGLUTININ COMPND MOL_ID: 1; COMPND 2 MOLECULE: LECTIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: AGGLUTININ SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CALYSTEGIA SEPIUM; SOURCE 3 ORGANISM_COMMON: HEDGE BINDWEED; SOURCE 4 ORGANISM_TAXID: 47519 KEYWDS BETA-PRISM FOLD, AGGLUTININ, LECTIN, MANNOSE-BINDING, JACALIN- KEYWDS 2 RELATED, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.BOURNE,V.ROIG-ZAMBONI,A.BARRE,W.J.PEUMANS,C.H.ASTOUL,E.J.M.VAN AUTHOR 2 DAMME,P.ROUGE REVDAT 4 13-JUL-11 1OUW 1 VERSN REVDAT 3 24-FEB-09 1OUW 1 VERSN REVDAT 2 08-FEB-05 1OUW 1 JRNL REVDAT 1 11-NOV-03 1OUW 0 JRNL AUTH Y.BOURNE,V.ROIG-ZAMBONI,A.BARRE,W.J.PEUMANS,C.H.ASTOUL, JRNL AUTH 2 E.J.M.VAN DAMME,P.ROUGE JRNL TITL THE CRYSTAL STRUCTURE OF THE CALYSTEGIA SEPIUM AGGLUTININ JRNL TITL 2 REVEALS A NOVEL QUATERNARY ARRANGEMENT OF LECTIN SUBUNITS JRNL TITL 3 WITH A BETA-PRISM FOLD JRNL REF J.BIOL.CHEM. V. 279 527 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 14561768 JRNL DOI 10.1074/JBC.M308218200 REMARK 2 REMARK 2 RESOLUTION. 1.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 90689 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1843 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.37 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6486 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.2280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4437 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 589 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 14.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.71000 REMARK 3 B22 (A**2) : -0.95000 REMARK 3 B33 (A**2) : -0.68000 REMARK 3 B12 (A**2) : 0.49000 REMARK 3 B13 (A**2) : -0.12000 REMARK 3 B23 (A**2) : 0.03000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.058 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.060 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.038 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.948 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4627 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3996 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6260 ; 1.398 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9308 ; 0.801 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 595 ; 6.844 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 686 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5251 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 961 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 721 ; 0.178 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4787 ; 0.264 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2840 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 352 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 27 ; 0.271 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 118 ; 0.324 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 54 ; 0.186 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2943 ; 0.863 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4720 ; 1.549 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1684 ; 2.071 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1540 ; 3.117 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 152 REMARK 3 ORIGIN FOR THE GROUP (A): 17.1010 -2.5140 55.2470 REMARK 3 T TENSOR REMARK 3 T11: 0.0133 T22: 0.0630 REMARK 3 T33: 0.0609 T12: -0.0003 REMARK 3 T13: -0.0060 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.2909 L22: 0.7175 REMARK 3 L33: 1.0260 L12: 0.0963 REMARK 3 L13: -0.0670 L23: -0.0163 REMARK 3 S TENSOR REMARK 3 S11: -0.0099 S12: -0.0252 S13: 0.0187 REMARK 3 S21: 0.0726 S22: 0.0209 S23: -0.0170 REMARK 3 S31: 0.0897 S32: 0.0019 S33: -0.0109 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 153 REMARK 3 ORIGIN FOR THE GROUP (A): 17.3450 13.0540 36.5740 REMARK 3 T TENSOR REMARK 3 T11: 0.0318 T22: 0.0494 REMARK 3 T33: 0.0610 T12: -0.0069 REMARK 3 T13: 0.0054 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.2975 L22: 0.6904 REMARK 3 L33: 0.7911 L12: -0.2439 REMARK 3 L13: -0.0074 L23: 0.1022 REMARK 3 S TENSOR REMARK 3 S11: 0.0344 S12: 0.0133 S13: 0.0121 REMARK 3 S21: -0.1028 S22: -0.0188 S23: -0.0109 REMARK 3 S31: -0.0890 S32: -0.0168 S33: -0.0155 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 153 REMARK 3 ORIGIN FOR THE GROUP (A): 26.8570 33.6880 16.9880 REMARK 3 T TENSOR REMARK 3 T11: 0.0010 T22: 0.0637 REMARK 3 T33: 0.0687 T12: -0.0063 REMARK 3 T13: -0.0053 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.4122 L22: 0.7250 REMARK 3 L33: 1.0271 L12: -0.0319 REMARK 3 L13: -0.1878 L23: -0.2710 REMARK 3 S TENSOR REMARK 3 S11: -0.0084 S12: -0.0343 S13: -0.0339 REMARK 3 S21: 0.0158 S22: -0.0131 S23: -0.0073 REMARK 3 S31: 0.0442 S32: 0.0388 S33: 0.0215 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 153 REMARK 3 ORIGIN FOR THE GROUP (A): 27.1330 51.0110 0.1750 REMARK 3 T TENSOR REMARK 3 T11: 0.0474 T22: 0.0381 REMARK 3 T33: 0.0528 T12: 0.0040 REMARK 3 T13: -0.0121 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.3795 L22: 0.7280 REMARK 3 L33: 0.8003 L12: -0.1060 REMARK 3 L13: 0.1410 L23: -0.2665 REMARK 3 S TENSOR REMARK 3 S11: 0.0006 S12: 0.0290 S13: 0.0562 REMARK 3 S21: -0.1032 S22: -0.0420 S23: 0.0115 REMARK 3 S31: -0.0742 S32: 0.0080 S33: 0.0414 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1OUW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-APR-03. REMARK 100 THE RCSB ID CODE IS RCSB018687. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92547 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.370 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.02200 REMARK 200 FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 26.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-30% PEG 4K, 0.2 IMIDAZOLE/MALATE, REMARK 280 PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 128 REMARK 465 GLY A 129 REMARK 465 LYS A 153 REMARK 465 ALA B 52 REMARK 465 ASP B 53 REMARK 465 ASN D 126 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 126 CG OD1 REMARK 470 VAL A 127 CG1 CG2 REMARK 470 LYS B 51 CG CD CE NZ REMARK 470 ASN B 126 CG OD1 REMARK 470 VAL B 127 CG1 CG2 REMARK 470 VAL B 128 CG1 CG2 REMARK 470 ASN C 126 CG OD1 REMARK 470 VAL C 127 CG1 CG2 REMARK 470 VAL C 128 CG1 CG2 REMARK 470 HIS C 152 CG ND1 CD2 CE1 NE2 REMARK 470 LYS D 51 CG CD CE NZ REMARK 470 VAL D 127 CG1 CG2 REMARK 470 VAL D 128 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 878 O HOH D 1199 1.86 REMARK 500 O HOH C 1017 O HOH C 1198 2.04 REMARK 500 C LYS B 51 O HOH B 1064 2.10 REMARK 500 OD1 ASN A 14 O HOH A 1155 2.19 REMARK 500 O VAL B 127 O HOH B 1193 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 951 O HOH B 952 1655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP C 53 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG C 100 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG C 100 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 40 43.55 -86.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLT D 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLT C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 516 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 517 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 518 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 520 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 521 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 522 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 523 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1C3K RELATED DB: PDB REMARK 900 RELATED ID: 1C3M RELATED DB: PDB REMARK 900 RELATED ID: 1C3N RELATED DB: PDB DBREF 1OUW A 2 153 UNP P93114 P93114_CALSE 2 153 DBREF 1OUW B 2 153 UNP P93114 P93114_CALSE 2 153 DBREF 1OUW C 2 153 UNP P93114 P93114_CALSE 2 153 DBREF 1OUW D 2 153 UNP P93114 P93114_CALSE 2 153 SEQADV 1OUW AYA A 2 UNP P93114 ALA 2 MODIFIED RESIDUE SEQADV 1OUW AYA B 2 UNP P93114 ALA 2 MODIFIED RESIDUE SEQADV 1OUW AYA C 2 UNP P93114 ALA 2 MODIFIED RESIDUE SEQADV 1OUW AYA D 2 UNP P93114 ALA 2 MODIFIED RESIDUE SEQRES 1 A 152 AYA VAL PRO MET ASP THR ILE SER GLY PRO TRP GLY ASN SEQRES 2 A 152 ASN GLY GLY ASN PHE TRP SER PHE ARG PRO VAL ASN LYS SEQRES 3 A 152 ILE ASN GLN ILE VAL ILE SER TYR GLY GLY GLY GLY ASN SEQRES 4 A 152 ASN PRO ILE ALA LEU THR PHE SER SER THR LYS ALA ASP SEQRES 5 A 152 GLY SER LYS ASP THR ILE THR VAL GLY GLY GLY GLY PRO SEQRES 6 A 152 ASP SER ILE THR GLY THR GLU MET VAL ASN ILE GLY THR SEQRES 7 A 152 ASP GLU TYR LEU THR GLY ILE SER GLY THR PHE GLY ILE SEQRES 8 A 152 TYR LEU ASP ASN ASN VAL LEU ARG SER ILE THR PHE THR SEQRES 9 A 152 THR ASN LEU LYS ALA HIS GLY PRO TYR GLY GLN LYS VAL SEQRES 10 A 152 GLY THR PRO PHE SER SER ALA ASN VAL VAL GLY ASN GLU SEQRES 11 A 152 ILE VAL GLY PHE LEU GLY ARG SER GLY TYR TYR VAL ASP SEQRES 12 A 152 ALA ILE GLY THR TYR ASN ARG HIS LYS SEQRES 1 B 152 AYA VAL PRO MET ASP THR ILE SER GLY PRO TRP GLY ASN SEQRES 2 B 152 ASN GLY GLY ASN PHE TRP SER PHE ARG PRO VAL ASN LYS SEQRES 3 B 152 ILE ASN GLN ILE VAL ILE SER TYR GLY GLY GLY GLY ASN SEQRES 4 B 152 ASN PRO ILE ALA LEU THR PHE SER SER THR LYS ALA ASP SEQRES 5 B 152 GLY SER LYS ASP THR ILE THR VAL GLY GLY GLY GLY PRO SEQRES 6 B 152 ASP SER ILE THR GLY THR GLU MET VAL ASN ILE GLY THR SEQRES 7 B 152 ASP GLU TYR LEU THR GLY ILE SER GLY THR PHE GLY ILE SEQRES 8 B 152 TYR LEU ASP ASN ASN VAL LEU ARG SER ILE THR PHE THR SEQRES 9 B 152 THR ASN LEU LYS ALA HIS GLY PRO TYR GLY GLN LYS VAL SEQRES 10 B 152 GLY THR PRO PHE SER SER ALA ASN VAL VAL GLY ASN GLU SEQRES 11 B 152 ILE VAL GLY PHE LEU GLY ARG SER GLY TYR TYR VAL ASP SEQRES 12 B 152 ALA ILE GLY THR TYR ASN ARG HIS LYS SEQRES 1 C 152 AYA VAL PRO MET ASP THR ILE SER GLY PRO TRP GLY ASN SEQRES 2 C 152 ASN GLY GLY ASN PHE TRP SER PHE ARG PRO VAL ASN LYS SEQRES 3 C 152 ILE ASN GLN ILE VAL ILE SER TYR GLY GLY GLY GLY ASN SEQRES 4 C 152 ASN PRO ILE ALA LEU THR PHE SER SER THR LYS ALA ASP SEQRES 5 C 152 GLY SER LYS ASP THR ILE THR VAL GLY GLY GLY GLY PRO SEQRES 6 C 152 ASP SER ILE THR GLY THR GLU MET VAL ASN ILE GLY THR SEQRES 7 C 152 ASP GLU TYR LEU THR GLY ILE SER GLY THR PHE GLY ILE SEQRES 8 C 152 TYR LEU ASP ASN ASN VAL LEU ARG SER ILE THR PHE THR SEQRES 9 C 152 THR ASN LEU LYS ALA HIS GLY PRO TYR GLY GLN LYS VAL SEQRES 10 C 152 GLY THR PRO PHE SER SER ALA ASN VAL VAL GLY ASN GLU SEQRES 11 C 152 ILE VAL GLY PHE LEU GLY ARG SER GLY TYR TYR VAL ASP SEQRES 12 C 152 ALA ILE GLY THR TYR ASN ARG HIS LYS SEQRES 1 D 152 AYA VAL PRO MET ASP THR ILE SER GLY PRO TRP GLY ASN SEQRES 2 D 152 ASN GLY GLY ASN PHE TRP SER PHE ARG PRO VAL ASN LYS SEQRES 3 D 152 ILE ASN GLN ILE VAL ILE SER TYR GLY GLY GLY GLY ASN SEQRES 4 D 152 ASN PRO ILE ALA LEU THR PHE SER SER THR LYS ALA ASP SEQRES 5 D 152 GLY SER LYS ASP THR ILE THR VAL GLY GLY GLY GLY PRO SEQRES 6 D 152 ASP SER ILE THR GLY THR GLU MET VAL ASN ILE GLY THR SEQRES 7 D 152 ASP GLU TYR LEU THR GLY ILE SER GLY THR PHE GLY ILE SEQRES 8 D 152 TYR LEU ASP ASN ASN VAL LEU ARG SER ILE THR PHE THR SEQRES 9 D 152 THR ASN LEU LYS ALA HIS GLY PRO TYR GLY GLN LYS VAL SEQRES 10 D 152 GLY THR PRO PHE SER SER ALA ASN VAL VAL GLY ASN GLU SEQRES 11 D 152 ILE VAL GLY PHE LEU GLY ARG SER GLY TYR TYR VAL ASP SEQRES 12 D 152 ALA ILE GLY THR TYR ASN ARG HIS LYS MODRES 1OUW AYA A 2 ALA N-ACETYLALANINE MODRES 1OUW AYA B 2 ALA N-ACETYLALANINE MODRES 1OUW AYA C 2 ALA N-ACETYLALANINE MODRES 1OUW AYA D 2 ALA N-ACETYLALANINE HET AYA A 2 8 HET AYA B 2 8 HET AYA C 2 8 HET AYA D 2 8 HET MLT D 501 9 HET MLT C 502 9 HET EDO A 510 4 HET EDO C 511 4 HET EDO D 512 4 HET EDO B 513 4 HET EDO B 514 4 HET EDO A 515 4 HET EDO B 516 4 HET EDO D 517 4 HET EDO C 518 4 HET IMD B 520 5 HET IMD A 521 5 HET IMD B 522 5 HET IMD A 523 5 HETNAM AYA N-ACETYLALANINE HETNAM MLT MALATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM IMD IMIDAZOLE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 AYA 4(C5 H9 N O3) FORMUL 5 MLT 2(C4 H5 O5 1-) FORMUL 7 EDO 9(C2 H6 O2) FORMUL 16 IMD 4(C3 H5 N2 1+) FORMUL 20 HOH *589(H2 O) SHEET 1 A 8 THR A 7 GLY A 13 0 SHEET 2 A 8 VAL A 143 ARG A 151 -1 O ILE A 146 N TRP A 12 SHEET 3 A 8 GLU A 131 SER A 139 -1 N LEU A 136 O GLY A 147 SHEET 4 A 8 ASN A 18 ARG A 23 -1 N PHE A 22 O PHE A 135 SHEET 5 A 8 ASN B 18 ARG B 23 -1 O SER B 21 N ARG A 23 SHEET 6 A 8 ASN B 130 SER B 139 -1 O PHE B 135 N PHE B 22 SHEET 7 A 8 VAL B 143 HIS B 152 -1 O GLY B 147 N LEU B 136 SHEET 8 A 8 THR B 7 GLY B 13 -1 N TRP B 12 O ILE B 146 SHEET 1 B 4 LYS A 56 GLY A 62 0 SHEET 2 B 4 ASN A 41 THR A 50 -1 N LEU A 45 O VAL A 61 SHEET 3 B 4 GLN A 30 GLY A 36 -1 N SER A 34 O ILE A 43 SHEET 4 B 4 GLY A 71 ASN A 76 -1 O GLU A 73 N ILE A 33 SHEET 1 C 4 ALA A 110 GLY A 115 0 SHEET 2 C 4 ASN A 96 THR A 106 -1 N ILE A 102 O TYR A 114 SHEET 3 C 4 LEU A 83 TYR A 93 -1 N THR A 89 O ARG A 100 SHEET 4 C 4 THR A 120 SER A 123 -1 O THR A 120 N PHE A 90 SHEET 1 D 4 LYS B 56 GLY B 62 0 SHEET 2 D 4 ASN B 41 THR B 50 -1 N SER B 49 O ASP B 57 SHEET 3 D 4 GLN B 30 GLY B 36 -1 N SER B 34 O ILE B 43 SHEET 4 D 4 ILE B 69 ASN B 76 -1 O GLY B 71 N TYR B 35 SHEET 1 E 4 ALA B 110 TYR B 114 0 SHEET 2 E 4 ASN B 96 THR B 106 -1 N ILE B 102 O TYR B 114 SHEET 3 E 4 LEU B 83 TYR B 93 -1 N THR B 89 O ARG B 100 SHEET 4 E 4 THR B 120 SER B 123 -1 O THR B 120 N PHE B 90 SHEET 1 F 8 THR C 7 GLY C 13 0 SHEET 2 F 8 VAL C 143 HIS C 152 -1 O ILE C 146 N TRP C 12 SHEET 3 F 8 ASN C 130 SER C 139 -1 N LEU C 136 O GLY C 147 SHEET 4 F 8 ASN C 18 ARG C 23 -1 N PHE C 22 O PHE C 135 SHEET 5 F 8 ASN D 18 ARG D 23 -1 O ARG D 23 N SER C 21 SHEET 6 F 8 ASN D 130 SER D 139 -1 O PHE D 135 N PHE D 22 SHEET 7 F 8 VAL D 143 HIS D 152 -1 O GLY D 147 N LEU D 136 SHEET 8 F 8 THR D 7 GLY D 13 -1 N TRP D 12 O ILE D 146 SHEET 1 G 4 LYS C 56 GLY C 62 0 SHEET 2 G 4 ASN C 41 THR C 50 -1 N LEU C 45 O VAL C 61 SHEET 3 G 4 GLN C 30 GLY C 36 -1 N SER C 34 O ILE C 43 SHEET 4 G 4 ILE C 69 ASN C 76 -1 O GLU C 73 N ILE C 33 SHEET 1 H 4 ALA C 110 GLY C 115 0 SHEET 2 H 4 ASN C 96 THR C 106 -1 N PHE C 104 O HIS C 111 SHEET 3 H 4 LEU C 83 TYR C 93 -1 N THR C 89 O ARG C 100 SHEET 4 H 4 THR C 120 SER C 123 -1 O THR C 120 N PHE C 90 SHEET 1 I 4 LYS D 56 GLY D 62 0 SHEET 2 I 4 ASN D 41 THR D 50 -1 N LEU D 45 O VAL D 61 SHEET 3 I 4 GLN D 30 GLY D 36 -1 N SER D 34 O ILE D 43 SHEET 4 I 4 ILE D 69 ASN D 76 -1 O GLU D 73 N ILE D 33 SHEET 1 J 4 ALA D 110 GLY D 115 0 SHEET 2 J 4 ASN D 96 THR D 106 -1 N PHE D 104 O HIS D 111 SHEET 3 J 4 LEU D 83 TYR D 93 -1 N THR D 89 O ARG D 100 SHEET 4 J 4 THR D 120 SER D 123 -1 O THR D 120 N PHE D 90 LINK C AYA A 2 N VAL A 3 1555 1555 1.34 LINK C AYA B 2 N VAL B 3 1555 1555 1.33 LINK C AYA C 2 N VAL C 3 1555 1555 1.34 LINK C AYA D 2 N VAL D 3 1555 1555 1.33 CISPEP 1 GLY A 10 PRO A 11 0 -2.14 CISPEP 2 GLY A 112 PRO A 113 0 -5.22 CISPEP 3 GLY B 10 PRO B 11 0 -3.06 CISPEP 4 GLY B 112 PRO B 113 0 -2.37 CISPEP 5 GLY C 10 PRO C 11 0 -3.03 CISPEP 6 GLY C 112 PRO C 113 0 3.07 CISPEP 7 GLY D 10 PRO D 11 0 -3.15 CISPEP 8 GLY D 112 PRO D 113 0 0.91 SITE 1 AC1 12 LYS A 109 GLY D 91 ILE D 92 ARG D 100 SITE 2 AC1 12 VAL D 118 GLY D 119 HOH D 653 HOH D 846 SITE 3 AC1 12 HOH D 847 HOH D 885 HOH D1121 HOH D1166 SITE 1 AC2 12 LYS B 109 GLY C 91 ILE C 92 ARG C 100 SITE 2 AC2 12 VAL C 118 GLY C 119 HOH C 683 HOH C 830 SITE 3 AC2 12 HOH C 942 HOH C1062 HOH C1122 HOH C1138 SITE 1 AC3 5 GLY A 140 TYR A 141 TYR A 142 ASP A 144 SITE 2 AC3 5 IMD A 523 SITE 1 AC4 8 PRO B 66 TYR B 141 HOH B 739 ASN C 96 SITE 2 AC4 8 GLY C 140 TYR C 141 TYR C 142 ASP C 144 SITE 1 AC5 8 PRO A 66 TYR A 141 EDO A 515 ASN D 96 SITE 2 AC5 8 GLY D 140 TYR D 141 TYR D 142 ASP D 144 SITE 1 AC6 5 GLY B 140 TYR B 141 TYR B 142 ASP B 144 SITE 2 AC6 5 IMD B 520 SITE 1 AC7 7 GLY A 54 SER A 55 LYS A 56 HOH A 908 SITE 2 AC7 7 MET B 5 HOH B 931 HOH B1191 SITE 1 AC8 6 GLY A 64 GLY A 65 PRO A 66 ASN D 96 SITE 2 AC8 6 TYR D 141 EDO D 512 SITE 1 AC9 5 ARG A 138 MET B 5 ASP B 6 HOH B 626 SITE 2 AC9 5 HOH B 951 SITE 1 BC1 6 ILE C 8 SER C 55 LYS C 56 MET D 5 SITE 2 BC1 6 HOH D1036 HOH D1085 SITE 1 BC2 7 TRP C 12 GLY C 13 THR C 72 MET C 74 SITE 2 BC2 7 HOH C 832 HOH C1176 AYA D 2 SITE 1 BC3 6 TYR B 141 TYR B 142 EDO B 513 ASN C 15 SITE 2 BC3 6 GLY C 17 HOH C1098 SITE 1 BC4 4 VAL A 25 ASN A 26 LYS A 27 GLU A 131 SITE 1 BC5 4 VAL B 25 ASN B 26 LYS B 27 GLU B 131 SITE 1 BC6 5 ASN A 96 TYR A 141 EDO A 510 ASN D 15 SITE 2 BC6 5 GLY D 17 CRYST1 30.562 51.792 79.780 104.99 94.36 94.85 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032720 0.002778 0.003355 0.00000 SCALE2 0.000000 0.019377 0.005365 0.00000 SCALE3 0.000000 0.000000 0.013044 0.00000 MASTER 476 0 19 0 48 0 30 6 0 0 0 48 END