HEADER CELL ADHESION 11-MAR-03 1OQV TITLE STRUCTURE OF TCPA, THE TYPE IV PILIN SUBUNIT FROM THE TOXIN CO- TITLE 2 REGULATED PILUS OF VIBRIO CHOLERAE CLASSICAL BIOTYPE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOXIN-COREGULATED PILUS SUBUNIT; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: GLOBULAR HEAD DOMAIN, RESIDUES 29-199; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 GENE: TCPA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ORIGAMI; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-15B KEYWDS TCPA, TYPE IV PILIN, PILIN, PILUS FILAMENT, VIBRIO CHOLERAE, FIBER KEYWDS 2 FORMING PROTEIN, ADHESIN, FIMBRIAE, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR L.CRAIG,J.A.TAINER REVDAT 3 13-JUL-11 1OQV 1 VERSN REVDAT 2 24-FEB-09 1OQV 1 VERSN REVDAT 1 03-JUN-03 1OQV 0 JRNL AUTH L.CRAIG,R.K.TAYLOR,M.E.PIQUE,B.D.ADAIR,A.S.ARVAI,M.SINGH, JRNL AUTH 2 S.J.LLOYD,D.S.SHIN,E.D.GETZOFF,M.YEAGER,K.T.FOREST, JRNL AUTH 3 J.A.TAINER JRNL TITL TYPE IV PILIN STRUCTURE AND ASSEMBLY: X-RAY AND EM ANALYSES JRNL TITL 2 OF VIBRIO CHOLERAE TOXIN-COREGULATED PILUS AND PSEUDOMONAS JRNL TITL 3 AERUGINOSA PAK PILIN JRNL REF MOL.CELL V. 11 1139 2003 JRNL REFN ISSN 1097-2765 JRNL PMID 12769840 JRNL DOI 10.1016/S1097-2765(03)00170-9 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 5.0 REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.117 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.113 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 6110 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 115573 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3681 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 765 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 ANGLE DISTANCES (A) : 2.100 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1OQV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-03. REMARK 100 THE RCSB ID CODE IS RCSB018579. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.975913 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHOROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 115573 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 4.710 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : 0.07300 REMARK 200 FOR THE DATA SET : 5.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.24500 REMARK 200 R SYM FOR SHELL (I) : 0.24500 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1.8 A STRUCTURE OF N-TERMINALLY TRUNCATED, SEMET- REMARK 200 LABELLED TCPA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, IMIDAZOLE, SODIUM CHLORIDE, REMARK 280 GLYCEROL, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 17.85950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 17.85950 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 17.85950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THOUSANDS OF PILIN SUBUNITS ASSEMBLE TO FORM A LONG THIN REMARK 300 FILAMENT 6 NM IN DIAMETER AND SEVERAL MICRONS IN LENGTH (SEE TCP REMARK 300 MODEL, PDB FILE XXX) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 8 REMARK 465 GLY A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 SER A 18 REMARK 465 SER A 19 REMARK 465 GLY A 20 REMARK 465 LEU A 21 REMARK 465 VAL A 22 REMARK 465 PRO A 23 REMARK 465 ARG A 24 REMARK 465 GLY A 25 REMARK 465 SER A 26 REMARK 465 HIS A 27 REMARK 465 MET A 28 REMARK 465 MET B 208 REMARK 465 GLY B 209 REMARK 465 SER B 210 REMARK 465 SER B 211 REMARK 465 HIS B 212 REMARK 465 HIS B 213 REMARK 465 HIS B 214 REMARK 465 HIS B 215 REMARK 465 HIS B 216 REMARK 465 HIS B 217 REMARK 465 SER B 218 REMARK 465 SER B 219 REMARK 465 GLY B 220 REMARK 465 LEU B 221 REMARK 465 VAL B 222 REMARK 465 PRO B 223 REMARK 465 ARG B 224 REMARK 465 GLY B 225 REMARK 465 SER B 226 REMARK 465 HIS B 227 REMARK 465 MET B 228 REMARK 465 MET C 408 REMARK 465 GLY C 409 REMARK 465 SER C 410 REMARK 465 SER C 411 REMARK 465 HIS C 412 REMARK 465 HIS C 413 REMARK 465 HIS C 414 REMARK 465 HIS C 415 REMARK 465 HIS C 416 REMARK 465 HIS C 417 REMARK 465 SER C 418 REMARK 465 SER C 419 REMARK 465 GLY C 420 REMARK 465 LEU C 421 REMARK 465 VAL C 422 REMARK 465 PRO C 423 REMARK 465 ARG C 424 REMARK 465 GLY C 425 REMARK 465 SER C 426 REMARK 465 HIS C 427 REMARK 465 MET C 428 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 1213 O HOH B 1235 4565 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 30 CB SER A 30 OG 0.102 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 29 N - CA - CB ANGL. DEV. = -12.2 DEGREES REMARK 500 ASP A 29 O - C - N ANGL. DEV. = -12.7 DEGREES REMARK 500 ASN A 41 CA - CB - CG ANGL. DEV. = -14.5 DEGREES REMARK 500 PHE A 96 O - C - N ANGL. DEV. = -11.1 DEGREES REMARK 500 SER A 97 C - N - CA ANGL. DEV. = 18.4 DEGREES REMARK 500 ASP A 175 C - N - CA ANGL. DEV. = 15.8 DEGREES REMARK 500 PHE B 296 O - C - N ANGL. DEV. = -9.7 DEGREES REMARK 500 SER B 297 C - N - CA ANGL. DEV. = 18.5 DEGREES REMARK 500 ALA B 355 C - N - CA ANGL. DEV. = 15.4 DEGREES REMARK 500 HIS B 381 CG - ND1 - CE1 ANGL. DEV. = 8.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 102 -9.98 81.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 850 DISTANCE = 5.51 ANGSTROMS REMARK 525 HOH A1177 DISTANCE = 5.03 ANGSTROMS REMARK 525 HOH A1182 DISTANCE = 5.75 ANGSTROMS REMARK 525 HOH A1183 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A1184 DISTANCE = 5.18 ANGSTROMS REMARK 525 HOH A1192 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH A1307 DISTANCE = 5.77 ANGSTROMS REMARK 525 HOH A1310 DISTANCE = 5.09 ANGSTROMS REMARK 525 HOH A1372 DISTANCE = 5.30 ANGSTROMS REMARK 525 HOH B 953 DISTANCE = 7.03 ANGSTROMS REMARK 525 HOH B 967 DISTANCE = 5.39 ANGSTROMS REMARK 525 HOH B 975 DISTANCE = 5.23 ANGSTROMS REMARK 525 HOH B 979 DISTANCE = 5.39 ANGSTROMS REMARK 525 HOH B 982 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH B1009 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH B1146 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH B1226 DISTANCE = 5.02 ANGSTROMS REMARK 525 HOH B1233 DISTANCE = 5.16 ANGSTROMS REMARK 525 HOH B1322 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH B1329 DISTANCE = 5.42 ANGSTROMS REMARK 525 HOH C1049 DISTANCE = 5.60 ANGSTROMS REMARK 525 HOH C1084 DISTANCE = 5.16 ANGSTROMS REMARK 525 HOH C1343 DISTANCE = 6.47 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OQW RELATED DB: PDB REMARK 900 FULL LENGTH PAK PILIN FROM PSEUDOMONAS AERUGINOSA REMARK 900 RELATED ID: 1OR9 RELATED DB: PDB REMARK 900 MODEL FOR THE ASSEMBLY OF THE TYPE IV PILUS FROM VIBRIO REMARK 900 CHOLERAE BASED ON ELECTRON MICROSCOPY AND X-RAY REMARK 900 CRYSTALLOGRAPHY REMARK 900 RELATED ID: 1DZO RELATED DB: PDB REMARK 900 TRUNCATED PAK PILIN FROM PSEUDOMONAS AERUGINOSA REMARK 900 RELATED ID: 2PIL RELATED DB: PDB REMARK 900 CRYSTALLOGRAPHIC STRUCTURE OF PHOSPHORYLATED PILIN FROM REMARK 900 NEISSERIA DBREF 1OQV A 29 199 UNP P23024 TCPA2_VIBCH 29 199 DBREF 1OQV B 229 399 UNP P23024 TCPA2_VIBCH 29 199 DBREF 1OQV C 429 599 UNP P23024 TCPA2_VIBCH 29 199 SEQADV 1OQV MET A 8 UNP P23024 EXPRESSION TAG SEQADV 1OQV GLY A 9 UNP P23024 EXPRESSION TAG SEQADV 1OQV SER A 10 UNP P23024 EXPRESSION TAG SEQADV 1OQV SER A 11 UNP P23024 EXPRESSION TAG SEQADV 1OQV HIS A 12 UNP P23024 EXPRESSION TAG SEQADV 1OQV HIS A 13 UNP P23024 EXPRESSION TAG SEQADV 1OQV HIS A 14 UNP P23024 EXPRESSION TAG SEQADV 1OQV HIS A 15 UNP P23024 EXPRESSION TAG SEQADV 1OQV HIS A 16 UNP P23024 EXPRESSION TAG SEQADV 1OQV HIS A 17 UNP P23024 EXPRESSION TAG SEQADV 1OQV SER A 18 UNP P23024 EXPRESSION TAG SEQADV 1OQV SER A 19 UNP P23024 EXPRESSION TAG SEQADV 1OQV GLY A 20 UNP P23024 EXPRESSION TAG SEQADV 1OQV LEU A 21 UNP P23024 EXPRESSION TAG SEQADV 1OQV VAL A 22 UNP P23024 EXPRESSION TAG SEQADV 1OQV PRO A 23 UNP P23024 EXPRESSION TAG SEQADV 1OQV ARG A 24 UNP P23024 EXPRESSION TAG SEQADV 1OQV GLY A 25 UNP P23024 EXPRESSION TAG SEQADV 1OQV SER A 26 UNP P23024 EXPRESSION TAG SEQADV 1OQV HIS A 27 UNP P23024 EXPRESSION TAG SEQADV 1OQV MET A 28 UNP P23024 EXPRESSION TAG SEQADV 1OQV MET B 208 UNP P23024 EXPRESSION TAG SEQADV 1OQV GLY B 209 UNP P23024 EXPRESSION TAG SEQADV 1OQV SER B 210 UNP P23024 EXPRESSION TAG SEQADV 1OQV SER B 211 UNP P23024 EXPRESSION TAG SEQADV 1OQV HIS B 212 UNP P23024 EXPRESSION TAG SEQADV 1OQV HIS B 213 UNP P23024 EXPRESSION TAG SEQADV 1OQV HIS B 214 UNP P23024 EXPRESSION TAG SEQADV 1OQV HIS B 215 UNP P23024 EXPRESSION TAG SEQADV 1OQV HIS B 216 UNP P23024 EXPRESSION TAG SEQADV 1OQV HIS B 217 UNP P23024 EXPRESSION TAG SEQADV 1OQV SER B 218 UNP P23024 EXPRESSION TAG SEQADV 1OQV SER B 219 UNP P23024 EXPRESSION TAG SEQADV 1OQV GLY B 220 UNP P23024 EXPRESSION TAG SEQADV 1OQV LEU B 221 UNP P23024 EXPRESSION TAG SEQADV 1OQV VAL B 222 UNP P23024 EXPRESSION TAG SEQADV 1OQV PRO B 223 UNP P23024 EXPRESSION TAG SEQADV 1OQV ARG B 224 UNP P23024 EXPRESSION TAG SEQADV 1OQV GLY B 225 UNP P23024 EXPRESSION TAG SEQADV 1OQV SER B 226 UNP P23024 EXPRESSION TAG SEQADV 1OQV HIS B 227 UNP P23024 EXPRESSION TAG SEQADV 1OQV MET B 228 UNP P23024 EXPRESSION TAG SEQADV 1OQV MET C 408 UNP P23024 EXPRESSION TAG SEQADV 1OQV GLY C 409 UNP P23024 EXPRESSION TAG SEQADV 1OQV SER C 410 UNP P23024 EXPRESSION TAG SEQADV 1OQV SER C 411 UNP P23024 EXPRESSION TAG SEQADV 1OQV HIS C 412 UNP P23024 EXPRESSION TAG SEQADV 1OQV HIS C 413 UNP P23024 EXPRESSION TAG SEQADV 1OQV HIS C 414 UNP P23024 EXPRESSION TAG SEQADV 1OQV HIS C 415 UNP P23024 EXPRESSION TAG SEQADV 1OQV HIS C 416 UNP P23024 EXPRESSION TAG SEQADV 1OQV HIS C 417 UNP P23024 EXPRESSION TAG SEQADV 1OQV SER C 418 UNP P23024 EXPRESSION TAG SEQADV 1OQV SER C 419 UNP P23024 EXPRESSION TAG SEQADV 1OQV GLY C 420 UNP P23024 EXPRESSION TAG SEQADV 1OQV LEU C 421 UNP P23024 EXPRESSION TAG SEQADV 1OQV VAL C 422 UNP P23024 EXPRESSION TAG SEQADV 1OQV PRO C 423 UNP P23024 EXPRESSION TAG SEQADV 1OQV ARG C 424 UNP P23024 EXPRESSION TAG SEQADV 1OQV GLY C 425 UNP P23024 EXPRESSION TAG SEQADV 1OQV SER C 426 UNP P23024 EXPRESSION TAG SEQADV 1OQV HIS C 427 UNP P23024 EXPRESSION TAG SEQADV 1OQV MET C 428 UNP P23024 EXPRESSION TAG SEQRES 1 A 192 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 192 LEU VAL PRO ARG GLY SER HIS MET ASP SER GLN ASN MET SEQRES 3 A 192 THR LYS ALA ALA GLN SER LEU ASN SER ILE GLN VAL ALA SEQRES 4 A 192 LEU THR GLN THR TYR ARG GLY LEU GLY ASN TYR PRO ALA SEQRES 5 A 192 THR ALA ASP ALA THR ALA ALA SER LYS LEU THR SER GLY SEQRES 6 A 192 LEU VAL SER LEU GLY LYS ILE SER SER ASP GLU ALA LYS SEQRES 7 A 192 ASN PRO PHE ILE GLY THR ASN MET ASN ILE PHE SER PHE SEQRES 8 A 192 PRO ARG ASN ALA ALA ALA ASN LYS ALA PHE ALA ILE SER SEQRES 9 A 192 VAL ASP GLY LEU THR GLN ALA GLN CYS LYS THR LEU ILE SEQRES 10 A 192 THR SER VAL GLY ASP MET PHE PRO TYR ILE ALA ILE LYS SEQRES 11 A 192 ALA GLY GLY ALA VAL ALA LEU ALA ASP LEU GLY ASP PHE SEQRES 12 A 192 GLU ASN SER ALA ALA ALA ALA GLU THR GLY VAL GLY VAL SEQRES 13 A 192 ILE LYS SER ILE ALA PRO ALA SER LYS ASN LEU ASP LEU SEQRES 14 A 192 THR ASN ILE THR HIS VAL GLU LYS LEU CYS LYS GLY THR SEQRES 15 A 192 ALA PRO PHE GLY VAL ALA PHE GLY ASN SER SEQRES 1 B 192 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 192 LEU VAL PRO ARG GLY SER HIS MET ASP SER GLN ASN MET SEQRES 3 B 192 THR LYS ALA ALA GLN SER LEU ASN SER ILE GLN VAL ALA SEQRES 4 B 192 LEU THR GLN THR TYR ARG GLY LEU GLY ASN TYR PRO ALA SEQRES 5 B 192 THR ALA ASP ALA THR ALA ALA SER LYS LEU THR SER GLY SEQRES 6 B 192 LEU VAL SER LEU GLY LYS ILE SER SER ASP GLU ALA LYS SEQRES 7 B 192 ASN PRO PHE ILE GLY THR ASN MET ASN ILE PHE SER PHE SEQRES 8 B 192 PRO ARG ASN ALA ALA ALA ASN LYS ALA PHE ALA ILE SER SEQRES 9 B 192 VAL ASP GLY LEU THR GLN ALA GLN CYS LYS THR LEU ILE SEQRES 10 B 192 THR SER VAL GLY ASP MET PHE PRO TYR ILE ALA ILE LYS SEQRES 11 B 192 ALA GLY GLY ALA VAL ALA LEU ALA ASP LEU GLY ASP PHE SEQRES 12 B 192 GLU ASN SER ALA ALA ALA ALA GLU THR GLY VAL GLY VAL SEQRES 13 B 192 ILE LYS SER ILE ALA PRO ALA SER LYS ASN LEU ASP LEU SEQRES 14 B 192 THR ASN ILE THR HIS VAL GLU LYS LEU CYS LYS GLY THR SEQRES 15 B 192 ALA PRO PHE GLY VAL ALA PHE GLY ASN SER SEQRES 1 C 192 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 192 LEU VAL PRO ARG GLY SER HIS MET ASP SER GLN ASN MET SEQRES 3 C 192 THR LYS ALA ALA GLN SER LEU ASN SER ILE GLN VAL ALA SEQRES 4 C 192 LEU THR GLN THR TYR ARG GLY LEU GLY ASN TYR PRO ALA SEQRES 5 C 192 THR ALA ASP ALA THR ALA ALA SER LYS LEU THR SER GLY SEQRES 6 C 192 LEU VAL SER LEU GLY LYS ILE SER SER ASP GLU ALA LYS SEQRES 7 C 192 ASN PRO PHE ILE GLY THR ASN MET ASN ILE PHE SER PHE SEQRES 8 C 192 PRO ARG ASN ALA ALA ALA ASN LYS ALA PHE ALA ILE SER SEQRES 9 C 192 VAL ASP GLY LEU THR GLN ALA GLN CYS LYS THR LEU ILE SEQRES 10 C 192 THR SER VAL GLY ASP MET PHE PRO TYR ILE ALA ILE LYS SEQRES 11 C 192 ALA GLY GLY ALA VAL ALA LEU ALA ASP LEU GLY ASP PHE SEQRES 12 C 192 GLU ASN SER ALA ALA ALA ALA GLU THR GLY VAL GLY VAL SEQRES 13 C 192 ILE LYS SER ILE ALA PRO ALA SER LYS ASN LEU ASP LEU SEQRES 14 C 192 THR ASN ILE THR HIS VAL GLU LYS LEU CYS LYS GLY THR SEQRES 15 C 192 ALA PRO PHE GLY VAL ALA PHE GLY ASN SER HET GOL A 600 6 HET GOL B 601 6 HET GOL B 602 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL 3(C3 H8 O3) FORMUL 7 HOH *765(H2 O) HELIX 1 1 SER A 30 ARG A 52 1 23 HELIX 2 2 GLY A 53 GLY A 55 5 3 HELIX 3 3 ASP A 62 LEU A 76 1 15 HELIX 4 4 SER A 80 LYS A 85 1 6 HELIX 5 5 THR A 116 GLY A 128 1 13 HELIX 6 6 ASP A 129 PHE A 131 5 3 HELIX 7 7 ALA A 143 GLY A 148 1 6 HELIX 8 8 ALA A 156 GLY A 160 5 5 HELIX 9 9 ASN A 178 LEU A 185 1 8 HELIX 10 10 SER B 230 ARG B 252 1 23 HELIX 11 11 GLY B 253 GLY B 255 5 3 HELIX 12 12 ASP B 262 LEU B 276 1 15 HELIX 13 13 SER B 280 LYS B 285 1 6 HELIX 14 14 THR B 316 GLY B 328 1 13 HELIX 15 15 ASP B 329 PHE B 331 5 3 HELIX 16 16 ALA B 343 GLY B 348 1 6 HELIX 17 17 ALA B 356 GLY B 360 5 5 HELIX 18 18 ASN B 378 LEU B 385 1 8 HELIX 19 19 SER C 430 ARG C 452 1 23 HELIX 20 20 GLY C 453 GLY C 455 5 3 HELIX 21 21 ASP C 462 LEU C 476 1 15 HELIX 22 22 SER C 480 LYS C 485 1 6 HELIX 23 23 THR C 516 GLY C 528 1 13 HELIX 24 24 ASP C 529 PHE C 531 5 3 HELIX 25 25 ALA C 543 GLY C 548 5 6 HELIX 26 26 ALA C 556 GLY C 560 5 5 HELIX 27 27 ASN C 578 LEU C 585 1 8 SHEET 1 A 5 ASN A 94 ARG A 100 0 SHEET 2 A 5 ALA A 103 LEU A 115 -1 O SER A 111 N ASN A 94 SHEET 3 A 5 PHE A 192 ASN A 198 -1 O VAL A 194 N VAL A 112 SHEET 4 A 5 TYR A 133 ALA A 138 -1 N ALA A 135 O ALA A 195 SHEET 5 A 5 GLY A 162 LYS A 165 -1 O ILE A 164 N ILE A 134 SHEET 1 B 5 ASN B 294 ARG B 300 0 SHEET 2 B 5 ALA B 303 LEU B 315 -1 O SER B 311 N ASN B 294 SHEET 3 B 5 PHE B 392 ASN B 398 -1 O VAL B 394 N VAL B 312 SHEET 4 B 5 TYR B 333 ALA B 338 -1 N LYS B 337 O GLY B 393 SHEET 5 B 5 GLY B 362 LYS B 365 -1 O ILE B 364 N ILE B 334 SHEET 1 C 5 ASN C 494 ARG C 500 0 SHEET 2 C 5 ALA C 503 LEU C 515 -1 O SER C 511 N ASN C 494 SHEET 3 C 5 PHE C 592 ASN C 598 -1 O VAL C 594 N VAL C 512 SHEET 4 C 5 TYR C 533 ALA C 538 -1 N LYS C 537 O GLY C 593 SHEET 5 C 5 GLY C 562 LYS C 565 -1 O ILE C 564 N ILE C 534 SSBOND 1 CYS A 120 CYS A 186 1555 1555 2.03 SSBOND 2 CYS B 320 CYS B 386 1555 1555 2.03 SSBOND 3 CYS C 520 CYS C 586 1555 1555 2.00 CISPEP 1 ASP A 29 SER A 30 0 -11.94 CISPEP 2 ALA A 190 PRO A 191 0 -3.41 CISPEP 3 ALA B 390 PRO B 391 0 -3.49 CISPEP 4 ALA C 590 PRO C 591 0 -3.29 SITE 1 AC1 8 ARG A 52 GLY A 55 PHE A 88 LYS A 106 SITE 2 AC1 8 GLN A 119 SER A 199 HOH A 711 HOH A 924 SITE 1 AC2 6 HOH A 913 SER B 353 ALA B 354 VAL B 363 SITE 2 AC2 6 HOH B 672 HOH B 726 SITE 1 AC3 7 ARG B 252 TYR B 257 ARG B 300 LYS B 306 SITE 2 AC3 7 GLN B 319 SER B 399 HOH B 679 CRYST1 157.317 157.317 35.719 90.00 90.00 120.00 P 63 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006357 0.003670 0.000000 0.00000 SCALE2 0.000000 0.007340 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027996 0.00000 MASTER 417 0 3 27 15 0 6 6 0 0 0 45 END