HEADER TRANSCRIPTION/RNA 03-MAR-03 1OOA TITLE CRYSTAL STRUCTURE OF NF-KB(P50)2 COMPLEXED TO A HIGH- TITLE 2 AFFINITY RNA APTAMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA APTAMER; COMPND 3 CHAIN: C, D; COMPND 4 FRAGMENT: 29-NT RNA APTAMER; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NUCLEAR FACTOR NF-KAPPA-B P105 SUBUNIT; COMPND 8 CHAIN: A, B; COMPND 9 SYNONYM: DNA-BINDING FACTOR KBF1, EBP- 1, NF-KAPPA-B1 COMPND 10 P84/NF-KAPPA-B1 P98, [CONTAINS: NUCLEAR FACTOR NF- KAPPA-B COMPND 11 P50 SUBUNIT]; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SYNTHESIS OF THE RNA FRAGMENT FROM THE T7 SOURCE 4 PROMOTER IN VITRO TRANSCRIPTION; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 8 ORGANISM_TAXID: 10090; SOURCE 9 GENE: NFKB1; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PET29B KEYWDS PROTEIN-RNA COMPLEX, TRANSCRIPTION FACTOR NF-KB, CRYSTAL KEYWDS 2 STRUCTURE, TRANSCRIPTION/RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.B.HUANG,D.VU,L.A.CASSIDAY,J.M.ZIMMERMAN,L.J.MAHER III, AUTHOR 2 G.GHOSH REVDAT 3 24-FEB-09 1OOA 1 VERSN REVDAT 2 25-JAN-05 1OOA 1 JRNL REVDAT 1 22-JUL-03 1OOA 0 JRNL AUTH D.B.HUANG,D.VU,L.A.CASSIDAY,J.M.ZIMMERMAN, JRNL AUTH 2 L.J.MAHER III,G.GHOSH JRNL TITL CRYSTAL STRUCTURE OF NF-KAPPAB (P50)2 COMPLEXED TO JRNL TITL 2 A HIGH-AFFINITY RNA APTAMER. JRNL REF PROC.NATL.ACAD.SCI.USA V. 100 9268 2003 JRNL REFN ISSN 0027-8424 JRNL PMID 12886018 JRNL DOI 10.1073/PNAS.1632011100 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.7 REMARK 3 NUMBER OF REFLECTIONS : 33180 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1990 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.60 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 59.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3592 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 230 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.022 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4914 REMARK 3 NUCLEIC ACID ATOMS : 1234 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 294 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.68000 REMARK 3 B22 (A**2) : -4.70000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 5.09000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.33 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.43 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.20 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.09 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 40.73 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1OOA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAR-03. REMARK 100 THE RCSB ID CODE IS RCSB018497. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37890 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.700 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1NFK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, ETHYLENE GLYCOL, AMMONIUM REMARK 280 SULFATE, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 38.37650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 75.52950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 38.37650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 75.52950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 351 REMARK 465 LYS A 352 REMARK 465 ASP A 353 REMARK 465 LYS A 354 REMARK 465 GLU A 355 REMARK 465 GLU A 356 REMARK 465 VAL A 357 REMARK 465 GLN A 358 REMARK 465 ARG A 359 REMARK 465 LYS A 360 REMARK 465 ARG A 361 REMARK 465 GLN A 362 REMARK 465 LYS A 363 REMARK 465 ILE B 351 REMARK 465 LYS B 352 REMARK 465 ASP B 353 REMARK 465 LYS B 354 REMARK 465 GLU B 355 REMARK 465 GLU B 356 REMARK 465 VAL B 357 REMARK 465 GLN B 358 REMARK 465 ARG B 359 REMARK 465 LYS B 360 REMARK 465 ARG B 361 REMARK 465 GLN B 362 REMARK 465 LYS B 363 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2' U C 7 O5' G C 8 1.99 REMARK 500 O2' U D 7 O5' G D 8 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G C 22 N9 - C1' - C2' ANGL. DEV. = 8.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 63 70.53 39.35 REMARK 500 VAL A 169 -60.22 -109.08 REMARK 500 ASP A 172 46.89 -94.57 REMARK 500 ALA A 178 82.30 -50.12 REMARK 500 ASP A 183 73.65 70.43 REMARK 500 GLU A 204 61.93 -154.82 REMARK 500 PHE A 225 83.75 -68.77 REMARK 500 ALA A 245 -73.09 -49.84 REMARK 500 ASN A 288 -148.11 -72.65 REMARK 500 VAL A 327 -162.84 -125.85 REMARK 500 SER A 335 -79.27 -48.37 REMARK 500 SER B 63 74.12 32.48 REMARK 500 TYR B 163 -70.82 -52.17 REMARK 500 ASN B 164 73.46 -163.94 REMARK 500 LEU B 167 -60.69 -99.48 REMARK 500 VAL B 169 -78.03 -142.40 REMARK 500 SER B 171 -75.29 -62.14 REMARK 500 ASP B 172 41.25 -64.15 REMARK 500 LEU B 173 10.43 -147.91 REMARK 500 GLU B 179 55.08 -143.54 REMARK 500 ASP B 183 -174.51 -172.30 REMARK 500 ARG B 184 -44.85 -171.47 REMARK 500 GLN B 185 111.17 78.99 REMARK 500 GLU B 204 -14.21 -140.24 REMARK 500 PHE B 225 83.67 -68.36 REMARK 500 LYS B 272 125.58 -36.99 REMARK 500 VAL B 327 -162.03 -129.90 REMARK 500 SER B 335 -72.40 -52.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 G C 23 0.05 SIDE_CHAIN REMARK 500 G D 23 0.05 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 617 DISTANCE = 5.05 ANGSTROMS REMARK 525 HOH A 543 DISTANCE = 5.01 ANGSTROMS REMARK 525 HOH A 592 DISTANCE = 6.59 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NFK RELATED DB: PDB DBREF 1OOA A 39 363 UNP P25799 NFKB1_MOUSE 39 363 DBREF 1OOA B 39 363 UNP P25799 NFKB1_MOUSE 39 363 DBREF 1OOA C 1 29 PDB 1OOA 1OOA 1 29 DBREF 1OOA D 1 29 PDB 1OOA 1OOA 1 29 SEQADV 1OOA GLY A 38 UNP P25799 CLONING ARTIFACT SEQADV 1OOA GLY B 38 UNP P25799 CLONING ARTIFACT SEQRES 1 C 29 C A U A C U U G A A A C U SEQRES 2 C 29 G U A A G G U U G G C G U SEQRES 3 C 29 A U G SEQRES 1 D 29 C A U A C U U G A A A C U SEQRES 2 D 29 G U A A G G U U G G C G U SEQRES 3 D 29 A U G SEQRES 1 A 326 GLY GLY PRO TYR LEU GLN ILE LEU GLU GLN PRO LYS GLN SEQRES 2 A 326 ARG GLY PHE ARG PHE ARG TYR VAL CYS GLU GLY PRO SER SEQRES 3 A 326 HIS GLY GLY LEU PRO GLY ALA SER SER GLU LYS ASN LYS SEQRES 4 A 326 LYS SER TYR PRO GLN VAL LYS ILE CYS ASN TYR VAL GLY SEQRES 5 A 326 PRO ALA LYS VAL ILE VAL GLN LEU VAL THR ASN GLY LYS SEQRES 6 A 326 ASN ILE HIS LEU HIS ALA HIS SER LEU VAL GLY LYS HIS SEQRES 7 A 326 CYS GLU ASP GLY VAL CYS THR VAL THR ALA GLY PRO LYS SEQRES 8 A 326 ASP MET VAL VAL GLY PHE ALA ASN LEU GLY ILE LEU HIS SEQRES 9 A 326 VAL THR LYS LYS LYS VAL PHE GLU THR LEU GLU ALA ARG SEQRES 10 A 326 MET THR GLU ALA CYS ILE ARG GLY TYR ASN PRO GLY LEU SEQRES 11 A 326 LEU VAL HIS SER ASP LEU ALA TYR LEU GLN ALA GLU GLY SEQRES 12 A 326 GLY GLY ASP ARG GLN LEU THR ASP ARG GLU LYS GLU ILE SEQRES 13 A 326 ILE ARG GLN ALA ALA VAL GLN GLN THR LYS GLU MET ASP SEQRES 14 A 326 LEU SER VAL VAL ARG LEU MET PHE THR ALA PHE LEU PRO SEQRES 15 A 326 ASP SER THR GLY SER PHE THR ARG ARG LEU GLU PRO VAL SEQRES 16 A 326 VAL SER ASP ALA ILE TYR ASP SER LYS ALA PRO ASN ALA SEQRES 17 A 326 SER ASN LEU LYS ILE VAL ARG MET ASP ARG THR ALA GLY SEQRES 18 A 326 CYS VAL THR GLY GLY GLU GLU ILE TYR LEU LEU CYS ASP SEQRES 19 A 326 LYS VAL GLN LYS ASP ASP ILE GLN ILE ARG PHE TYR GLU SEQRES 20 A 326 GLU GLU GLU ASN GLY GLY VAL TRP GLU GLY PHE GLY ASP SEQRES 21 A 326 PHE SER PRO THR ASP VAL HIS ARG GLN PHE ALA ILE VAL SEQRES 22 A 326 PHE LYS THR PRO LYS TYR LYS ASP VAL ASN ILE THR LYS SEQRES 23 A 326 PRO ALA SER VAL PHE VAL GLN LEU ARG ARG LYS SER ASP SEQRES 24 A 326 LEU GLU THR SER GLU PRO LYS PRO PHE LEU TYR TYR PRO SEQRES 25 A 326 GLU ILE LYS ASP LYS GLU GLU VAL GLN ARG LYS ARG GLN SEQRES 26 A 326 LYS SEQRES 1 B 326 GLY GLY PRO TYR LEU GLN ILE LEU GLU GLN PRO LYS GLN SEQRES 2 B 326 ARG GLY PHE ARG PHE ARG TYR VAL CYS GLU GLY PRO SER SEQRES 3 B 326 HIS GLY GLY LEU PRO GLY ALA SER SER GLU LYS ASN LYS SEQRES 4 B 326 LYS SER TYR PRO GLN VAL LYS ILE CYS ASN TYR VAL GLY SEQRES 5 B 326 PRO ALA LYS VAL ILE VAL GLN LEU VAL THR ASN GLY LYS SEQRES 6 B 326 ASN ILE HIS LEU HIS ALA HIS SER LEU VAL GLY LYS HIS SEQRES 7 B 326 CYS GLU ASP GLY VAL CYS THR VAL THR ALA GLY PRO LYS SEQRES 8 B 326 ASP MET VAL VAL GLY PHE ALA ASN LEU GLY ILE LEU HIS SEQRES 9 B 326 VAL THR LYS LYS LYS VAL PHE GLU THR LEU GLU ALA ARG SEQRES 10 B 326 MET THR GLU ALA CYS ILE ARG GLY TYR ASN PRO GLY LEU SEQRES 11 B 326 LEU VAL HIS SER ASP LEU ALA TYR LEU GLN ALA GLU GLY SEQRES 12 B 326 GLY GLY ASP ARG GLN LEU THR ASP ARG GLU LYS GLU ILE SEQRES 13 B 326 ILE ARG GLN ALA ALA VAL GLN GLN THR LYS GLU MET ASP SEQRES 14 B 326 LEU SER VAL VAL ARG LEU MET PHE THR ALA PHE LEU PRO SEQRES 15 B 326 ASP SER THR GLY SER PHE THR ARG ARG LEU GLU PRO VAL SEQRES 16 B 326 VAL SER ASP ALA ILE TYR ASP SER LYS ALA PRO ASN ALA SEQRES 17 B 326 SER ASN LEU LYS ILE VAL ARG MET ASP ARG THR ALA GLY SEQRES 18 B 326 CYS VAL THR GLY GLY GLU GLU ILE TYR LEU LEU CYS ASP SEQRES 19 B 326 LYS VAL GLN LYS ASP ASP ILE GLN ILE ARG PHE TYR GLU SEQRES 20 B 326 GLU GLU GLU ASN GLY GLY VAL TRP GLU GLY PHE GLY ASP SEQRES 21 B 326 PHE SER PRO THR ASP VAL HIS ARG GLN PHE ALA ILE VAL SEQRES 22 B 326 PHE LYS THR PRO LYS TYR LYS ASP VAL ASN ILE THR LYS SEQRES 23 B 326 PRO ALA SER VAL PHE VAL GLN LEU ARG ARG LYS SER ASP SEQRES 24 B 326 LEU GLU THR SER GLU PRO LYS PRO PHE LEU TYR TYR PRO SEQRES 25 B 326 GLU ILE LYS ASP LYS GLU GLU VAL GLN ARG LYS ARG GLN SEQRES 26 B 326 LYS FORMUL 5 HOH *294(H2 O) HELIX 1 1 TYR A 57 GLY A 61 5 5 HELIX 2 2 THR A 143 LYS A 145 5 3 HELIX 3 3 LYS A 146 GLY A 162 1 17 HELIX 4 4 ASN A 164 VAL A 169 1 6 HELIX 5 5 HIS A 170 ALA A 174 5 5 HELIX 6 6 THR A 187 LYS A 203 1 17 HELIX 7 7 SER A 299 VAL A 303 5 5 HELIX 8 8 TYR B 57 GLY B 61 5 5 HELIX 9 9 LYS B 146 ARG B 161 1 16 HELIX 10 10 ASN B 164 VAL B 169 1 6 HELIX 11 11 HIS B 170 ALA B 174 5 5 HELIX 12 12 THR B 187 LYS B 203 1 17 HELIX 13 13 SER B 299 VAL B 303 5 5 SHEET 1 A 3 TYR A 41 GLU A 46 0 SHEET 2 A 3 GLN A 81 CYS A 85 -1 O CYS A 85 N TYR A 41 SHEET 3 A 3 VAL A 131 GLY A 133 -1 O VAL A 132 N VAL A 82 SHEET 1 B 5 CYS A 116 GLU A 117 0 SHEET 2 B 5 VAL A 120 ALA A 125 -1 O VAL A 120 N GLU A 117 SHEET 3 B 5 ALA A 91 VAL A 98 -1 N ALA A 91 O ALA A 125 SHEET 4 B 5 VAL A 209 PRO A 219 -1 O PHE A 217 N LYS A 92 SHEET 5 B 5 PHE A 225 ARG A 228 -1 O ARG A 227 N LEU A 218 SHEET 1 C 5 CYS A 116 GLU A 117 0 SHEET 2 C 5 VAL A 120 ALA A 125 -1 O VAL A 120 N GLU A 117 SHEET 3 C 5 ALA A 91 VAL A 98 -1 N ALA A 91 O ALA A 125 SHEET 4 C 5 VAL A 209 PRO A 219 -1 O PHE A 217 N LYS A 92 SHEET 5 C 5 VAL A 232 TYR A 238 -1 O ILE A 237 N VAL A 210 SHEET 1 D 2 SER A 110 GLY A 113 0 SHEET 2 D 2 LEU A 137 LEU A 140 -1 O LEU A 140 N SER A 110 SHEET 1 E 3 ILE A 250 MET A 253 0 SHEET 2 E 3 GLU A 265 CYS A 270 -1 O LEU A 269 N ARG A 252 SHEET 3 E 3 ALA A 308 LYS A 312 -1 O PHE A 311 N ILE A 266 SHEET 1 F 5 ALA A 257 CYS A 259 0 SHEET 2 F 5 LYS A 343 TYR A 348 1 O LEU A 346 N GLY A 258 SHEET 3 F 5 ALA A 325 ARG A 332 -1 N VAL A 327 O PHE A 345 SHEET 4 F 5 GLN A 279 GLU A 285 -1 N ARG A 281 O GLN A 330 SHEET 5 F 5 VAL A 291 PHE A 295 -1 O GLY A 294 N PHE A 282 SHEET 1 G 3 TYR B 41 GLU B 46 0 SHEET 2 G 3 GLN B 81 CYS B 85 -1 O LYS B 83 N GLN B 43 SHEET 3 G 3 VAL B 131 GLY B 133 -1 O VAL B 132 N VAL B 82 SHEET 1 H 5 CYS B 116 GLU B 117 0 SHEET 2 H 5 VAL B 120 THR B 124 -1 O VAL B 120 N GLU B 117 SHEET 3 H 5 LYS B 92 VAL B 98 -1 N VAL B 93 O VAL B 123 SHEET 4 H 5 VAL B 209 PRO B 219 -1 O PHE B 217 N LYS B 92 SHEET 5 H 5 PHE B 225 ARG B 228 -1 O ARG B 227 N LEU B 218 SHEET 1 I 5 CYS B 116 GLU B 117 0 SHEET 2 I 5 VAL B 120 THR B 124 -1 O VAL B 120 N GLU B 117 SHEET 3 I 5 LYS B 92 VAL B 98 -1 N VAL B 93 O VAL B 123 SHEET 4 I 5 VAL B 209 PRO B 219 -1 O PHE B 217 N LYS B 92 SHEET 5 I 5 VAL B 232 TYR B 238 -1 O ILE B 237 N VAL B 210 SHEET 1 J 2 SER B 110 GLY B 113 0 SHEET 2 J 2 LEU B 137 LEU B 140 -1 O LEU B 140 N SER B 110 SHEET 1 K 3 ILE B 250 MET B 253 0 SHEET 2 K 3 GLU B 265 CYS B 270 -1 O LEU B 269 N ARG B 252 SHEET 3 K 3 ALA B 308 LYS B 312 -1 O PHE B 311 N ILE B 266 SHEET 1 L 5 ALA B 257 CYS B 259 0 SHEET 2 L 5 LYS B 343 TYR B 348 1 O TYR B 348 N GLY B 258 SHEET 3 L 5 ALA B 325 ARG B 332 -1 N VAL B 327 O PHE B 345 SHEET 4 L 5 GLN B 279 GLU B 285 -1 N ARG B 281 O GLN B 330 SHEET 5 L 5 VAL B 291 PHE B 295 -1 O GLY B 294 N PHE B 282 CRYST1 76.753 151.059 95.628 90.00 105.95 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013029 0.000000 0.003724 0.00000 SCALE2 0.000000 0.006620 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010876 0.00000 MASTER 366 0 0 13 46 0 0 6 0 0 0 58 END