HEADER TRANSFERASE 27-FEB-03 1ON8 TITLE CRYSTAL STRUCTURE OF MOUSE ALPHA-1,4-N-ACETYLHEXOSAMINYLTRANSFERASE TITLE 2 (EXTL2) WITH UDP AND GLCUAB(1-3)GALB(1-O)-NAPHTHALENELMETHANOL AN TITLE 3 ACCEPTOR SUBSTRATE ANALOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-1,4-N-ACETYLHEXOSAMINYLTRANSFERASE EXTL2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 SYNONYM: ALPHA-GALNACT EXTL2, EXT-RELATED PROTEIN 2, EXOSTOSIN-LIKE COMPND 6 2; COMPND 7 EC: 2.4.1.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: EXTL2 OR EXTR2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMAL-2C KEYWDS ROSSMANN FOLD, DXD MOTIF, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.C.PEDERSEN,J.DONG,F.TANIGUCHI,H.KITAGAWA,J.M.KRAHN,L.G.PEDERSEN, AUTHOR 2 K.SUGAHARA,M.NEGISHI REVDAT 6 29-JUL-20 1ON8 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 11-OCT-17 1ON8 1 REMARK REVDAT 4 13-JUL-11 1ON8 1 VERSN REVDAT 3 23-JUN-10 1ON8 1 FORMUL REVDAT 2 24-FEB-09 1ON8 1 VERSN REVDAT 1 22-APR-03 1ON8 0 JRNL AUTH L.C.PEDERSEN,J.DONG,F.TANIGUCHI,H.KITAGAWA,J.M.KRAHN, JRNL AUTH 2 L.G.PEDERSEN,K.SUGAHARA,M.NEGISHI JRNL TITL CRYSTAL STRUCTURE OF AN JRNL TITL 2 ALPHA-1,4-N-ACETYLHEXOSAMINYLTRANSFERASE (EXTL2), A MEMBER JRNL TITL 3 OF THE EXOSTOSIN GENE FAMILY INVOLVED IN HEPARAN SULFATE JRNL TITL 4 BIOSYNTHESIS JRNL REF J.BIOL.CHEM. V. 278 14420 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12562774 JRNL DOI 10.1074/JBC.M210532200 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 18130 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 889 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2733 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 140 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.028 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4188 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.83000 REMARK 3 B22 (A**2) : 0.83000 REMARK 3 B33 (A**2) : -1.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : 0.33 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.44 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.880 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.280 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.220 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.720 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.520 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 23.66 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : EDO_ION.PARAM REMARK 3 PARAMETER FILE 3 : UDP2.PAR REMARK 3 PARAMETER FILE 4 : GAG.PAR REMARK 3 PARAMETER FILE 5 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : EDO.TOP REMARK 3 TOPOLOGY FILE 4 : UDP2.TOP REMARK 3 TOPOLOGY FILE 5 : GAG.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ON8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAR-03. REMARK 100 THE DEPOSITION ID IS D_1000018465. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18492 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09500 REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.39300 REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB CODE: 1OMX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3000, MGCL2, CACODYLATE, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 62.57850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 62.57850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 62.57850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 62.57850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 62.57850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.57850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 62.57850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.57850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). THE BIOLOGICAL REMARK 300 UNIT IS NOT KNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 45210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 65570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -239.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -125.15700 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -62.57850 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 -62.57850 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 62.57850 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 -62.57850 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 38 REMARK 465 ASN A 39 REMARK 465 LEU A 40 REMARK 465 LEU A 41 REMARK 465 PRO A 42 REMARK 465 ASN A 43 REMARK 465 ILE A 44 REMARK 465 LYS A 45 REMARK 465 GLU A 46 REMARK 465 ASP A 47 REMARK 465 LYS A 48 REMARK 465 MET A 49 REMARK 465 LEU A 50 REMARK 465 THR A 51 REMARK 465 LEU A 52 REMARK 465 ARG A 53 REMARK 465 ARG A 54 REMARK 465 GLU A 55 REMARK 465 ILE A 56 REMARK 465 LYS A 57 REMARK 465 SER A 58 REMARK 465 PRO A 59 REMARK 465 SER A 60 REMARK 465 LYS A 61 REMARK 465 SER A 62 REMARK 465 SER A 328 REMARK 465 LYS A 329 REMARK 465 MET A 330 REMARK 465 THR B 38 REMARK 465 ASN B 39 REMARK 465 LEU B 40 REMARK 465 LEU B 41 REMARK 465 PRO B 42 REMARK 465 ASN B 43 REMARK 465 ILE B 44 REMARK 465 LYS B 45 REMARK 465 GLU B 46 REMARK 465 ASP B 47 REMARK 465 LYS B 48 REMARK 465 MET B 49 REMARK 465 LEU B 50 REMARK 465 THR B 51 REMARK 465 LEU B 52 REMARK 465 ARG B 53 REMARK 465 ARG B 54 REMARK 465 GLU B 55 REMARK 465 ILE B 56 REMARK 465 LYS B 57 REMARK 465 SER B 58 REMARK 465 PRO B 59 REMARK 465 SER B 60 REMARK 465 LYS B 61 REMARK 465 SER B 62 REMARK 465 ASN B 278 REMARK 465 GLY B 279 REMARK 465 TYR B 280 REMARK 465 SER B 328 REMARK 465 LYS B 329 REMARK 465 MET B 330 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 64 CG CD1 CD2 REMARK 470 VAL A 103 CG1 CG2 REMARK 470 SER A 188 OG REMARK 470 ASN A 278 CG OD1 ND2 REMARK 470 ARG A 286 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 105 CG CD OE1 OE2 REMARK 470 LYS B 106 CG CD CE NZ REMARK 470 SER B 188 OG REMARK 470 LYS B 275 CG CD CE NZ REMARK 470 ARG B 286 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 327 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 203 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 PRO B 203 C - N - CA ANGL. DEV. = 10.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 76 25.62 -151.95 REMARK 500 ASP A 152 41.36 -79.47 REMARK 500 ASP A 153 15.81 -152.29 REMARK 500 PHE A 171 56.71 -152.85 REMARK 500 SER A 188 114.68 -38.32 REMARK 500 PRO A 203 -89.24 -52.45 REMARK 500 ALA A 216 67.62 -162.46 REMARK 500 CYS A 244 38.64 39.58 REMARK 500 ASN A 269 85.39 -155.86 REMARK 500 HIS A 289 -70.68 -60.52 REMARK 500 ARG B 76 33.64 -146.11 REMARK 500 ASP B 152 38.23 -86.52 REMARK 500 PHE B 171 62.79 -154.48 REMARK 500 SER B 188 122.83 -31.65 REMARK 500 PRO B 203 -92.32 -34.94 REMARK 500 ALA B 216 66.94 -162.31 REMARK 500 CYS B 244 -2.37 82.61 REMARK 500 GLU B 276 85.63 -64.90 REMARK 500 LEU B 309 136.12 -38.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 THERE IS NO ELECTRON DENSITY FOR THE NAPTHALENELMETHANOL REMARK 600 MOIETY. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 600 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 153 OD2 REMARK 620 2 UDP A 351 O3B 160.3 REMARK 620 3 UDP A 351 O2A 98.4 100.1 REMARK 620 4 HOH A 604 O 79.0 98.2 78.8 REMARK 620 5 HOH A 605 O 86.7 95.0 104.2 165.7 REMARK 620 6 HOH A 606 O 71.6 88.8 162.8 85.4 89.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 601 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 153 OD2 REMARK 620 2 UDP B 352 O3B 162.0 REMARK 620 3 UDP B 352 O2A 99.6 96.3 REMARK 620 4 HOH B 613 O 88.2 90.0 68.3 REMARK 620 5 HOH B 614 O 89.2 95.9 101.1 168.4 REMARK 620 6 HOH B 615 O 84.6 77.5 157.5 89.9 101.0 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OMX RELATED DB: PDB REMARK 900 APO ENZYME REMARK 900 RELATED ID: 1OMZ RELATED DB: PDB REMARK 900 WITH DONOR SUBSTRATE UDPGALNAC REMARK 900 RELATED ID: 1ON6 RELATED DB: PDB REMARK 900 WITH DONOR SUBSTRATE UDPGLCNAC REMARK 999 REMARK 999 SEQUENCE REMARK 999 ALTHOUGH THE CATALYTIC DOMAIN CONTAINING REMARK 999 RESIDUES 38-330 WERE CLONED INTO THE REMARK 999 EXPRESSION SYSTEM, THE EXACT N-TERMINI OF REMARK 999 THE FINAL PRODUCT IS NOT KNOWN DUE TO REMARK 999 CLEAVAGE OF THE FUSION PROTEIN WITH A REMARK 999 NON-SPECIFIC PROTEASE. HOWEVER THERE IS REMARK 999 ELECTRON DENSITY STARTING AT RESIDUE 62. DBREF 1ON8 A 38 330 UNP Q9ES89 EXL2_MOUSE 38 330 DBREF 1ON8 B 38 330 UNP Q9ES89 EXL2_MOUSE 38 330 SEQRES 1 A 293 THR ASN LEU LEU PRO ASN ILE LYS GLU ASP LYS MET LEU SEQRES 2 A 293 THR LEU ARG ARG GLU ILE LYS SER PRO SER LYS SER ALA SEQRES 3 A 293 LEU ASP SER PHE THR LEU ILE MET GLN THR TYR ASN ARG SEQRES 4 A 293 THR ASP LEU LEU LEU ARG LEU LEU ASN HIS TYR GLN ALA SEQRES 5 A 293 VAL PRO SER LEU HIS LYS VAL ILE VAL VAL TRP ASN ASN SEQRES 6 A 293 VAL GLY GLU LYS GLY PRO GLU GLU LEU TRP ASN SER LEU SEQRES 7 A 293 GLY PRO HIS PRO ILE PRO VAL ILE PHE LYS PRO GLN THR SEQRES 8 A 293 ALA ASN LYS MET ARG ASN ARG LEU GLN VAL PHE PRO GLU SEQRES 9 A 293 VAL GLU THR ASN ALA VAL LEU MET VAL ASP ASP ASP THR SEQRES 10 A 293 LEU ILE SER ALA GLN ASP LEU VAL PHE ALA PHE SER ILE SEQRES 11 A 293 TRP GLN GLN PHE PRO ASP GLN ILE ILE GLY PHE VAL PRO SEQRES 12 A 293 ARG LYS HIS VAL SER THR SER SER GLY ILE TYR SER TYR SEQRES 13 A 293 GLY GLY PHE GLU LEU GLN THR PRO GLY PRO GLY ASN GLY SEQRES 14 A 293 ASP GLN TYR SER MET VAL LEU ILE GLY ALA SER PHE PHE SEQRES 15 A 293 ASN SER LYS TYR LEU GLU LEU PHE GLN LYS GLN PRO ALA SEQRES 16 A 293 ALA VAL HIS ALA LEU ILE ASP GLU THR GLN ASN CYS ASP SEQRES 17 A 293 ASP ILE ALA MET ASN PHE LEU VAL THR ARG HIS THR GLY SEQRES 18 A 293 LYS PRO SER GLY ILE PHE VAL LYS PRO ILE ASN MET VAL SEQRES 19 A 293 ASN LEU GLU LYS GLU THR ASN GLY TYR SER GLY MET TRP SEQRES 20 A 293 HIS ARG ALA GLU HIS PHE LEU GLN ARG SER TYR CYS ILE SEQRES 21 A 293 ASN LYS LEU VAL ASN ILE TYR ASP GLY MET PRO LEU LYS SEQRES 22 A 293 TYR SER ASN ILE MET ILE SER GLN PHE GLY PHE PRO TYR SEQRES 23 A 293 ALA ASN HIS LYS SER LYS MET SEQRES 1 B 293 THR ASN LEU LEU PRO ASN ILE LYS GLU ASP LYS MET LEU SEQRES 2 B 293 THR LEU ARG ARG GLU ILE LYS SER PRO SER LYS SER ALA SEQRES 3 B 293 LEU ASP SER PHE THR LEU ILE MET GLN THR TYR ASN ARG SEQRES 4 B 293 THR ASP LEU LEU LEU ARG LEU LEU ASN HIS TYR GLN ALA SEQRES 5 B 293 VAL PRO SER LEU HIS LYS VAL ILE VAL VAL TRP ASN ASN SEQRES 6 B 293 VAL GLY GLU LYS GLY PRO GLU GLU LEU TRP ASN SER LEU SEQRES 7 B 293 GLY PRO HIS PRO ILE PRO VAL ILE PHE LYS PRO GLN THR SEQRES 8 B 293 ALA ASN LYS MET ARG ASN ARG LEU GLN VAL PHE PRO GLU SEQRES 9 B 293 VAL GLU THR ASN ALA VAL LEU MET VAL ASP ASP ASP THR SEQRES 10 B 293 LEU ILE SER ALA GLN ASP LEU VAL PHE ALA PHE SER ILE SEQRES 11 B 293 TRP GLN GLN PHE PRO ASP GLN ILE ILE GLY PHE VAL PRO SEQRES 12 B 293 ARG LYS HIS VAL SER THR SER SER GLY ILE TYR SER TYR SEQRES 13 B 293 GLY GLY PHE GLU LEU GLN THR PRO GLY PRO GLY ASN GLY SEQRES 14 B 293 ASP GLN TYR SER MET VAL LEU ILE GLY ALA SER PHE PHE SEQRES 15 B 293 ASN SER LYS TYR LEU GLU LEU PHE GLN LYS GLN PRO ALA SEQRES 16 B 293 ALA VAL HIS ALA LEU ILE ASP GLU THR GLN ASN CYS ASP SEQRES 17 B 293 ASP ILE ALA MET ASN PHE LEU VAL THR ARG HIS THR GLY SEQRES 18 B 293 LYS PRO SER GLY ILE PHE VAL LYS PRO ILE ASN MET VAL SEQRES 19 B 293 ASN LEU GLU LYS GLU THR ASN GLY TYR SER GLY MET TRP SEQRES 20 B 293 HIS ARG ALA GLU HIS PHE LEU GLN ARG SER TYR CYS ILE SEQRES 21 B 293 ASN LYS LEU VAL ASN ILE TYR ASP GLY MET PRO LEU LYS SEQRES 22 B 293 TYR SER ASN ILE MET ILE SER GLN PHE GLY PHE PRO TYR SEQRES 23 B 293 ALA ASN HIS LYS SER LYS MET HET GAL C 1 12 HET BDP C 2 12 HET GAL D 1 12 HET BDP D 2 12 HET MN A 600 1 HET UDP A 351 25 HET EDO A 401 4 HET MN B 601 1 HET UDP B 352 25 HET EDO B 402 4 HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM BDP BETA-D-GLUCOPYRANURONIC ACID HETNAM MN MANGANESE (II) ION HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETSYN BDP D-GLUCURONIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 3 GAL 2(C6 H12 O6) FORMUL 3 BDP 2(C6 H10 O7) FORMUL 5 MN 2(MN 2+) FORMUL 6 UDP 2(C9 H14 N2 O12 P2) FORMUL 7 EDO 2(C2 H6 O2) FORMUL 11 HOH *97(H2 O) HELIX 1 1 ARG A 76 GLN A 88 1 13 HELIX 2 2 PRO A 108 LEU A 115 1 8 HELIX 3 3 LYS A 131 GLN A 137 5 7 HELIX 4 4 SER A 157 GLN A 169 1 13 HELIX 5 5 SER A 221 LYS A 229 1 9 HELIX 6 6 PRO A 231 GLN A 242 1 12 HELIX 7 7 CYS A 244 GLY A 258 1 15 HELIX 8 9 GLU A 288 TYR A 304 1 17 HELIX 9 10 ARG B 76 GLN B 88 1 13 HELIX 10 11 PRO B 108 LEU B 115 1 8 HELIX 11 12 LYS B 131 GLN B 137 5 7 HELIX 12 13 SER B 157 GLN B 169 1 13 HELIX 13 14 SER B 221 LYS B 229 1 9 HELIX 14 15 PRO B 231 GLN B 242 1 12 HELIX 15 16 CYS B 244 GLY B 258 1 15 HELIX 16 17 GLU B 288 TYR B 304 1 17 SHEET 1 A16 VAL A 122 PRO A 126 0 SHEET 2 A16 LEU A 93 TRP A 100 1 N VAL A 96 O ILE A 123 SHEET 3 A16 PHE A 67 THR A 73 1 N LEU A 69 O ILE A 97 SHEET 4 A16 ALA A 146 VAL A 150 1 O LEU A 148 N THR A 68 SHEET 5 A16 ALA A 216 ASN A 220 -1 O SER A 217 N MET A 149 SHEET 6 A16 ILE A 175 GLY A 177 -1 N ILE A 176 O PHE A 218 SHEET 7 A16 GLY A 262 VAL A 265 1 O VAL A 265 N GLY A 177 SHEET 8 A16 ILE A 314 GLN A 318 1 O ILE A 316 N PHE A 264 SHEET 9 A16 ILE B 314 GLN B 318 -1 O SER B 317 N MET A 315 SHEET 10 A16 GLY B 262 VAL B 265 1 N PHE B 264 O ILE B 316 SHEET 11 A16 ILE B 175 GLY B 177 1 N ILE B 175 O ILE B 263 SHEET 12 A16 ALA B 216 ASN B 220 -1 O PHE B 218 N ILE B 176 SHEET 13 A16 ALA B 146 VAL B 150 -1 N MET B 149 O SER B 217 SHEET 14 A16 PHE B 67 THR B 73 1 N THR B 68 O LEU B 148 SHEET 15 A16 LEU B 93 TRP B 100 1 O HIS B 94 N PHE B 67 SHEET 16 A16 VAL B 122 PRO B 126 1 O ILE B 123 N VAL B 96 SHEET 1 B 2 THR A 154 ILE A 156 0 SHEET 2 B 2 MET A 270 ASN A 272 -1 O VAL A 271 N LEU A 155 SHEET 1 C 3 ILE A 190 GLY A 194 0 SHEET 2 C 3 PRO A 180 SER A 187 -1 N SER A 187 O ILE A 190 SHEET 3 C 3 MET A 211 VAL A 212 -1 O MET A 211 N ARG A 181 SHEET 1 D 2 THR B 154 ILE B 156 0 SHEET 2 D 2 MET B 270 ASN B 272 -1 O VAL B 271 N LEU B 155 SHEET 1 E 3 TYR B 191 GLY B 194 0 SHEET 2 E 3 PRO B 180 SER B 185 -1 N LYS B 182 O GLY B 194 SHEET 3 E 3 MET B 211 VAL B 212 -1 O MET B 211 N ARG B 181 SSBOND 1 CYS A 244 CYS A 296 1555 1555 2.03 SSBOND 2 CYS B 244 CYS B 296 1555 1555 2.02 LINK O3 GAL C 1 C1 BDP C 2 1555 1555 1.47 LINK O3 GAL D 1 C1 BDP D 2 1555 1555 1.47 LINK OD2 ASP A 153 MN MN A 600 1555 1555 2.58 LINK O3B UDP A 351 MN MN A 600 1555 1555 2.03 LINK O2A UDP A 351 MN MN A 600 1555 1555 2.16 LINK MN MN A 600 O HOH A 604 1555 1555 2.17 LINK MN MN A 600 O HOH A 605 1555 1555 2.08 LINK MN MN A 600 O HOH A 606 1555 1555 2.22 LINK OD2 ASP B 153 MN MN B 601 1555 1555 2.39 LINK O3B UDP B 352 MN MN B 601 1555 1555 2.00 LINK O2A UDP B 352 MN MN B 601 1555 1555 2.37 LINK MN MN B 601 O HOH B 613 1555 1555 2.20 LINK MN MN B 601 O HOH B 614 1555 1555 2.23 LINK MN MN B 601 O HOH B 615 1555 1555 2.52 CISPEP 1 GLY A 116 PRO A 117 0 0.23 CISPEP 2 PHE A 321 PRO A 322 0 0.21 CISPEP 3 GLY B 116 PRO B 117 0 -0.03 CISPEP 4 PHE B 321 PRO B 322 0 0.39 CRYST1 125.157 125.157 83.692 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007990 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007990 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011949 0.00000 MASTER 444 0 10 16 26 0 0 6 0 0 0 46 END