HEADER GLYCOLYTIC PATHWAY 30-JAN-03 1OBF TITLE THE CRYSTAL STRUCTURE OF GLYCERALDEHYDE 3-PHOSPHATE TITLE 2 DEHYDROGENASE FROM ALCALIGENES XYLOSOXIDANS AT 1.7 A TITLE 3 RESOLUTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE; COMPND 3 CHAIN: O, P; COMPND 4 EC: 1.2.1.12 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACHROMOBACTER XYLOSOXIDANS; SOURCE 3 ORGANISM_COMMON: ALCALIGENES XYLOSOXIDANS; SOURCE 4 ORGANISM_TAXID: 85698 KEYWDS GLYCOLYTIC PATHWAY, OXIDOREDUCTASE, FREE-NAD GAPDH EXPDTA X-RAY DIFFRACTION AUTHOR S.V.ANTONYUK,R.R.EADY,R.W.STRANGE,S.S.HASNAIN REVDAT 3 05-NOV-14 1OBF 1 REMARK VERSN SEQRES MODRES REVDAT 3 2 HET HETNAM HETSYN FORMUL REVDAT 3 3 LINK HETATM REVDAT 2 24-FEB-09 1OBF 1 VERSN REVDAT 1 12-JUN-03 1OBF 0 JRNL AUTH S.V.ANTONYUK,R.R.EADY,R.W.STRANGE,S.S.HASNAIN JRNL TITL THE STRUCTURE OF GLYCERALDEHYDE 3-PHOSPHATE JRNL TITL 2 DEHYDROGENASE FROM ALCALIGENES XYLOSOXIDANS AT 1.7 JRNL TITL 3 A RESOLUTION JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 59 835 2003 JRNL REFN ISSN 0907-4449 JRNL PMID 12777799 JRNL DOI 10.1107/S0907444903041441 REMARK 2 REMARK 2 RESOLUTION. 1.7 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.7 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.0 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 96935 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.16701 REMARK 3 R VALUE (WORKING SET) : 0.16594 REMARK 3 FREE R VALUE : 0.18711 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 5007 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5014 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 501 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.7 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.299 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.80 REMARK 3 B22 (A**2) : -0.10 REMARK 3 B33 (A**2) : 2.91 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.078 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.871 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 1OBF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-FEB-03. REMARK 100 THE PDBE ID CODE IS EBI-11944. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 102122 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1GD1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.3 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN 5MG/ML, 12 % PEG550, REMARK 280 100 MM POTASSIUM THIOCYANATE, 50 MM MES BUFFER (PH 6.5) REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.31100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.31100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.49200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 73.31100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.49200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 73.31100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 73.31100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.49200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 73.31100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 73.31100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.49200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 73.31100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: O, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 73.31100 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 HOH O2007 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O5 PG4 P 344 O HOH P 2254 2.00 REMARK 500 O HOH O 2037 O HOH O 2091 1.61 REMARK 500 O HOH O 2060 O HOH O 2125 1.62 REMARK 500 O HOH O 2060 O HOH O 2162 1.57 REMARK 500 O HOH O 2090 O HOH O 2091 2.09 REMARK 500 O HOH O 2090 O HOH O 2216 1.38 REMARK 500 O HOH O 2092 O HOH O 2216 2.15 REMARK 500 O HOH O 2099 O HOH O 2115 1.83 REMARK 500 O HOH O 2125 O HOH O 2126 1.49 REMARK 500 O HOH O 2200 O HOH O 2202 1.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH P 2174 O HOH P 2233 3655 2.14 REMARK 500 O HOH P 2254 O HOH P 2254 3555 1.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP O 39 CB - CG - OD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 ASP P 39 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP P 93 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR O 9 45.82 -104.08 REMARK 500 ALA O 78 85.37 -153.51 REMARK 500 SER O 122 43.74 -83.14 REMARK 500 ALA O 152 -157.21 61.56 REMARK 500 VAL O 241 134.37 86.70 REMARK 500 ALA P 78 87.12 -151.02 REMARK 500 PRO P 86 48.61 -81.12 REMARK 500 SER P 122 44.13 -83.05 REMARK 500 ASN P 138 21.11 -141.61 REMARK 500 ALA P 152 -152.80 61.82 REMARK 500 LEU P 170 -52.96 -145.25 REMARK 500 VAL P 241 135.51 86.01 REMARK 500 ILE P 274 -55.48 -124.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K O 343 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN O 185 O REMARK 620 2 GLN O 187 O 72.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K P 343 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN P 187 O REMARK 620 2 PG4 P 344 O3 125.1 REMARK 620 3 PG4 P 344 O4 99.9 56.2 REMARK 620 4 PG4 P 344 O5 79.0 111.7 57.1 REMARK 620 5 ASN P 185 O 75.5 131.3 172.4 115.7 REMARK 620 6 PG4 P 344 O2 140.8 53.4 104.8 140.2 82.3 REMARK 620 7 HOH P2253 O 150.8 81.9 85.8 80.3 95.4 62.1 REMARK 620 8 ASN P 186 O 65.2 76.7 108.6 139.0 75.2 78.1 140.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 O 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 O 342 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K O 343 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 P 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K P 343 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 P 344 DBREF 1OBF O 1 335 PDB 1OBF 1OBF 1 335 DBREF 1OBF P 1 335 PDB 1OBF 1OBF 1 335 SEQRES 1 O 335 THR ILE ARG VAL ALA ILE ASN GLY TYR GLY ARG ILE GLY SEQRES 2 O 335 ARG ASN ILE LEU ARG ALA HIS TYR GLU GLY GLY LYS SER SEQRES 3 O 335 HIS ASP ILE GLU ILE VAL ALA ILE ASN ASP LEU GLY ASP SEQRES 4 O 335 PRO LYS THR ASN ALA HIS LEU THR ARG TYR ASP THR ALA SEQRES 5 O 335 HIS GLY LYS PHE PRO GLY THR VAL SER VAL ASN GLY SER SEQRES 6 O 335 TYR MET VAL VAL ASN GLY ASP LYS ILE ARG VAL ASP ALA SEQRES 7 O 335 ASN ARG ASN PRO ALA GLN LEU PRO TRP GLY ALA LEU LYS SEQRES 8 O 335 VAL ASP VAL VAL LEU GLU CYS THR GLY PHE PHE THR THR SEQRES 9 O 335 LYS GLU LYS ALA GLY ALA HIS ILE LYS GLY GLY ALA LYS SEQRES 10 O 335 LYS VAL ILE ILE SER ALA PRO GLY GLY ALA ASP VAL ASP SEQRES 11 O 335 ALA THR VAL VAL TYR GLY VAL ASN HIS GLY THR LEU LYS SEQRES 12 O 335 SER THR ASP THR VAL ILE SER ASN ALA SER CSD THR THR SEQRES 13 O 335 ASN CYS LEU ALA PRO LEU VAL LYS PRO LEU ASN ASP LYS SEQRES 14 O 335 LEU GLY LEU GLN ASP GLY LEU MET THR THR VAL HIS ALA SEQRES 15 O 335 TYR THR ASN ASN GLN VAL LEU THR ASP VAL TYR HIS GLU SEQRES 16 O 335 ASP LEU ARG ARG ALA ARG SER ALA THR MET SER MET ILE SEQRES 17 O 335 PRO THR LYS THR GLY ALA ALA ALA ALA VAL GLY ASP VAL SEQRES 18 O 335 LEU PRO GLU LEU ASP GLY LYS LEU ASN GLY TYR ALA ILE SEQRES 19 O 335 ARG VAL PRO THR ILE ASN VAL SER ILE VAL ASP LEU SER SEQRES 20 O 335 PHE VAL ALA LYS ARG ASN THR THR VAL GLU GLU VAL ASN SEQRES 21 O 335 GLY ILE LEU LYS ALA ALA SER GLU GLY GLU LEU LYS GLY SEQRES 22 O 335 ILE LEU ASP TYR ASN THR GLU PRO LEU VAL SER VAL ASP SEQRES 23 O 335 TYR ASN HIS ASP PRO ALA SER SER THR VAL ASP ALA SER SEQRES 24 O 335 LEU THR LYS VAL SER GLY ARG LEU VAL LYS VAL SER SER SEQRES 25 O 335 TRP TYR ASP ASN GLU TRP GLY PHE SER ASN ARG MET LEU SEQRES 26 O 335 ASP THR THR VAL ALA LEU MET SER ALA ALA SEQRES 1 P 335 THR ILE ARG VAL ALA ILE ASN GLY TYR GLY ARG ILE GLY SEQRES 2 P 335 ARG ASN ILE LEU ARG ALA HIS TYR GLU GLY GLY LYS SER SEQRES 3 P 335 HIS ASP ILE GLU ILE VAL ALA ILE ASN ASP LEU GLY ASP SEQRES 4 P 335 PRO LYS THR ASN ALA HIS LEU THR ARG TYR ASP THR ALA SEQRES 5 P 335 HIS GLY LYS PHE PRO GLY THR VAL SER VAL ASN GLY SER SEQRES 6 P 335 TYR MET VAL VAL ASN GLY ASP LYS ILE ARG VAL ASP ALA SEQRES 7 P 335 ASN ARG ASN PRO ALA GLN LEU PRO TRP GLY ALA LEU LYS SEQRES 8 P 335 VAL ASP VAL VAL LEU GLU CYS THR GLY PHE PHE THR THR SEQRES 9 P 335 LYS GLU LYS ALA GLY ALA HIS ILE LYS GLY GLY ALA LYS SEQRES 10 P 335 LYS VAL ILE ILE SER ALA PRO GLY GLY ALA ASP VAL ASP SEQRES 11 P 335 ALA THR VAL VAL TYR GLY VAL ASN HIS GLY THR LEU LYS SEQRES 12 P 335 SER THR ASP THR VAL ILE SER ASN ALA SER CSD THR THR SEQRES 13 P 335 ASN CYS LEU ALA PRO LEU VAL LYS PRO LEU ASN ASP LYS SEQRES 14 P 335 LEU GLY LEU GLN ASP GLY LEU MET THR THR VAL HIS ALA SEQRES 15 P 335 TYR THR ASN ASN GLN VAL LEU THR ASP VAL TYR HIS GLU SEQRES 16 P 335 ASP LEU ARG ARG ALA ARG SER ALA THR MET SER MET ILE SEQRES 17 P 335 PRO THR LYS THR GLY ALA ALA ALA ALA VAL GLY ASP VAL SEQRES 18 P 335 LEU PRO GLU LEU ASP GLY LYS LEU ASN GLY TYR ALA ILE SEQRES 19 P 335 ARG VAL PRO THR ILE ASN VAL SER ILE VAL ASP LEU SER SEQRES 20 P 335 PHE VAL ALA LYS ARG ASN THR THR VAL GLU GLU VAL ASN SEQRES 21 P 335 GLY ILE LEU LYS ALA ALA SER GLU GLY GLU LEU LYS GLY SEQRES 22 P 335 ILE LEU ASP TYR ASN THR GLU PRO LEU VAL SER VAL ASP SEQRES 23 P 335 TYR ASN HIS ASP PRO ALA SER SER THR VAL ASP ALA SER SEQRES 24 P 335 LEU THR LYS VAL SER GLY ARG LEU VAL LYS VAL SER SER SEQRES 25 P 335 TRP TYR ASP ASN GLU TRP GLY PHE SER ASN ARG MET LEU SEQRES 26 P 335 ASP THR THR VAL ALA LEU MET SER ALA ALA MODRES 1OBF CSD O 154 CYS 3-SULFINOALANINE MODRES 1OBF CSD P 154 CYS 3-SULFINOALANINE HET CSD O 154 9 HET CSD P 154 9 HET SO4 O 341 5 HET SO4 O 342 5 HET K O 343 1 HET SO4 P 341 5 HET K P 343 1 HET PG4 P 344 13 HETNAM CSD 3-SULFINOALANINE HETNAM SO4 SULFATE ION HETNAM K POTASSIUM ION HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN CSD S-CYSTEINESULFINIC ACID HETSYN PG4 POLYETHYLENE GLYCOL PEG400 FORMUL 1 CSD 2(C3 H7 N O4 S) FORMUL 3 SO4 3(O4 S 2-) FORMUL 5 K 2(K 1+) FORMUL 8 PG4 C8 H18 O5 FORMUL 9 HOH *501(H2 O) HELIX 1 1 GLY O 10 GLY O 23 1 14 HELIX 2 2 ASP O 39 ARG O 48 1 10 HELIX 3 3 ASN O 81 LEU O 85 5 5 HELIX 4 4 THR O 104 GLY O 115 1 12 HELIX 5 5 ASN O 138 LEU O 142 5 5 HELIX 6 6 SER O 153 LEU O 170 1 18 HELIX 7 7 GLY O 213 LEU O 222 1 10 HELIX 8 8 PRO O 223 ASP O 226 5 4 HELIX 9 9 THR O 255 GLY O 269 1 15 HELIX 10 10 VAL O 283 ASN O 288 5 6 HELIX 11 11 SER O 299 THR O 301 5 3 HELIX 12 12 GLU O 317 ALA O 334 1 18 HELIX 13 13 GLY P 10 GLY P 23 1 14 HELIX 14 14 ASP P 39 TYR P 49 1 11 HELIX 15 15 ASN P 81 LEU P 85 5 5 HELIX 16 16 THR P 104 GLY P 109 1 6 HELIX 17 17 GLY P 109 GLY P 114 1 6 HELIX 18 18 ASN P 138 LEU P 142 5 5 HELIX 19 19 SER P 153 LEU P 170 1 18 HELIX 20 20 ALA P 217 LEU P 222 1 6 HELIX 21 21 PRO P 223 ASP P 226 5 4 HELIX 22 22 THR P 255 GLY P 269 1 15 HELIX 23 23 VAL P 283 ASN P 288 5 6 HELIX 24 24 SER P 299 THR P 301 5 3 HELIX 25 25 GLU P 317 ALA P 334 1 18 SHEET 1 OA 9 VAL O 60 ASN O 63 0 SHEET 2 OA 9 TYR O 66 VAL O 69 -1 O TYR O 66 N ASN O 63 SHEET 3 OA 9 ASP O 72 ASP O 77 -1 O ASP O 72 N VAL O 69 SHEET 4 OA 9 ILE O 29 ASN O 35 1 O VAL O 32 N ARG O 75 SHEET 5 OA 9 ILE O 2 ASN O 7 1 O ILE O 2 N GLU O 30 SHEET 6 OA 9 VAL O 94 GLU O 97 1 O VAL O 94 N ALA O 5 SHEET 7 OA 9 LYS O 118 ILE O 121 1 O LYS O 118 N VAL O 95 SHEET 8 OA 9 VAL O 148 SER O 150 1 O ILE O 149 N ILE O 121 SHEET 9 OA 9 ALA O 131 THR O 132 1 O ALA O 131 N SER O 150 SHEET 1 OB 2 TYR O 49 ASP O 50 0 SHEET 2 OB 2 GLY O 54 LYS O 55 -1 O GLY O 54 N ASP O 50 SHEET 1 OC 7 ILE O 208 LYS O 211 0 SHEET 2 OC 7 LEU O 229 VAL O 236 -1 O ALA O 233 N THR O 210 SHEET 3 OC 7 LEU O 172 ALA O 182 1 O GLY O 175 N ASN O 230 SHEET 4 OC 7 SER O 242 ALA O 250 -1 O ILE O 243 N VAL O 180 SHEET 5 OC 7 LEU O 307 TYR O 314 -1 O VAL O 308 N PHE O 248 SHEET 6 OC 7 SER O 294 ASP O 297 -1 O THR O 295 N TRP O 313 SHEET 7 OC 7 LEU O 275 ASN O 278 1 O ASP O 276 N VAL O 296 SHEET 1 OD 6 ILE O 208 LYS O 211 0 SHEET 2 OD 6 LEU O 229 VAL O 236 -1 O ALA O 233 N THR O 210 SHEET 3 OD 6 LEU O 172 ALA O 182 1 O GLY O 175 N ASN O 230 SHEET 4 OD 6 SER O 242 ALA O 250 -1 O ILE O 243 N VAL O 180 SHEET 5 OD 6 LEU O 307 TYR O 314 -1 O VAL O 308 N PHE O 248 SHEET 6 OD 6 LYS O 302 SER O 304 -1 O LYS O 302 N LYS O 309 SHEET 1 PA 8 VAL P 60 ASN P 63 0 SHEET 2 PA 8 TYR P 66 VAL P 69 -1 O TYR P 66 N ASN P 63 SHEET 3 PA 8 ASP P 72 ASP P 77 -1 O ASP P 72 N VAL P 69 SHEET 4 PA 8 ILE P 29 ASN P 35 1 O VAL P 32 N ARG P 75 SHEET 5 PA 8 ILE P 2 ASN P 7 1 O ILE P 2 N GLU P 30 SHEET 6 PA 8 VAL P 94 GLU P 97 1 O VAL P 94 N ALA P 5 SHEET 7 PA 8 LYS P 118 ILE P 121 1 O LYS P 118 N VAL P 95 SHEET 8 PA 8 VAL P 148 SER P 150 1 O ILE P 149 N ILE P 121 SHEET 1 PB 7 ILE P 208 THR P 210 0 SHEET 2 PB 7 LEU P 229 VAL P 236 -1 O ALA P 233 N THR P 210 SHEET 3 PB 7 LEU P 172 ALA P 182 1 O GLY P 175 N ASN P 230 SHEET 4 PB 7 SER P 242 ALA P 250 -1 O ILE P 243 N VAL P 180 SHEET 5 PB 7 LEU P 307 TYR P 314 -1 O VAL P 308 N PHE P 248 SHEET 6 PB 7 SER P 294 ASP P 297 -1 O THR P 295 N TRP P 313 SHEET 7 PB 7 LEU P 275 ASN P 278 1 O ASP P 276 N VAL P 296 SHEET 1 PC 6 ILE P 208 THR P 210 0 SHEET 2 PC 6 LEU P 229 VAL P 236 -1 O ALA P 233 N THR P 210 SHEET 3 PC 6 LEU P 172 ALA P 182 1 O GLY P 175 N ASN P 230 SHEET 4 PC 6 SER P 242 ALA P 250 -1 O ILE P 243 N VAL P 180 SHEET 5 PC 6 LEU P 307 TYR P 314 -1 O VAL P 308 N PHE P 248 SHEET 6 PC 6 LYS P 302 SER P 304 -1 O LYS P 302 N LYS P 309 LINK C SER O 153 N CSD O 154 1555 1555 1.34 LINK C CSD O 154 N THR O 155 1555 1555 1.34 LINK K K O 343 O ASN O 185 1555 1555 3.04 LINK K K O 343 O GLN O 187 1555 1555 2.88 LINK K K O 343 O ASN O 186 1555 1555 3.54 LINK C SER P 153 N CSD P 154 1555 1555 1.34 LINK C CSD P 154 N THR P 155 1555 1555 1.34 LINK K K P 343 O3 PG4 P 344 1555 1555 2.95 LINK K K P 343 O4 PG4 P 344 1555 1555 3.00 LINK K K P 343 O5 PG4 P 344 1555 1555 3.09 LINK K K P 343 O ASN P 185 1555 1555 2.81 LINK K K P 343 O2 PG4 P 344 1555 1555 3.08 LINK K K P 343 O HOH P2253 1555 1555 2.71 LINK K K P 343 O ASN P 186 1555 1555 3.45 LINK K K P 343 O GLN P 187 1555 1555 2.74 SITE 1 AC1 5 THR O 184 ASN O 186 ARG O 199 ARG O 235 SITE 2 AC1 5 HOH O2245 SITE 1 AC2 6 SER O 153 THR O 212 GLY O 213 ALA O 214 SITE 2 AC2 6 HOH O2246 HOH O2247 SITE 1 AC3 3 ASN O 185 ASN O 186 GLN O 187 SITE 1 AC4 4 THR P 184 ARG P 199 ARG P 235 HOH P2252 SITE 1 AC5 5 ASN P 185 ASN P 186 GLN P 187 PG4 P 344 SITE 2 AC5 5 HOH P2253 SITE 1 AC6 9 ASN P 185 ASN P 186 VAL P 188 TYR P 193 SITE 2 AC6 9 K P 343 HOH P2133 HOH P2253 HOH P2254 SITE 3 AC6 9 HOH P2255 CRYST1 88.984 146.622 146.622 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011238 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006820 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006820 0.00000 MTRIX1 1 0.989000 0.003000 -0.151000 5.41295 1 MTRIX2 1 -0.002000 -0.999000 -0.033000 57.33633 1 MTRIX3 1 -0.151000 0.033000 -0.988000 71.34437 1 MASTER 357 0 8 25 45 0 11 9 0 0 0 52 END