HEADER TRANSFERASE 09-JUL-03 1O4U TITLE CRYSTAL STRUCTURE OF A NICOTINATE NUCLEOTIDE PYROPHOSPHORYLASE TITLE 2 (TM1645) FROM THERMOTOGA MARITIMA AT 2.50 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE II QUINOLIC ACID PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM1645; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 9 18-JUL-18 1O4U 1 REMARK REVDAT 8 04-OCT-17 1O4U 1 REMARK REVDAT 7 13-JUL-11 1O4U 1 VERSN REVDAT 6 23-MAR-11 1O4U 1 TITLE KEYWDS REVDAT 5 24-FEB-09 1O4U 1 VERSN REVDAT 4 20-SEP-05 1O4U 1 JRNL REVDAT 3 18-JAN-05 1O4U 1 AUTHOR KEYWDS REMARK REVDAT 2 04-MAY-04 1O4U 1 JRNL COMPND TITLE KEYWDS REVDAT 1 22-JUL-03 1O4U 0 JRNL AUTH R.SCHWARZENBACHER,L.JAROSZEWSKI,F.VON DELFT,P.ABDUBEK, JRNL AUTH 2 E.AMBING,T.BIORAC,L.S.BRINEN,J.M.CANAVES,J.CAMBELL,H.J.CHIU, JRNL AUTH 3 X.DAI,A.M.DEACON,M.DIDONATO,M.A.ELSLIGER,S.ESHAGI,R.FLOYD, JRNL AUTH 4 A.GODZIK,C.GRITTINI,S.K.GRZECHNIK,E.HAMPTON,C.KARLAK, JRNL AUTH 5 H.E.KLOCK,E.KOESEMA,J.S.KOVARIK,A.KREUSCH,P.KUHN,S.A.LESLEY, JRNL AUTH 6 I.LEVIN,D.MCMULLAN,T.M.MCPHILLIPS,M.D.MILLER,A.MORSE,K.MOY, JRNL AUTH 7 J.OUYANG,R.PAGE,K.QUIJANO,A.ROBB,G.SPRAGGON,R.C.STEVENS, JRNL AUTH 8 H.VAN DEN BEDEM,J.VELASQUEZ,J.VINCENT,X.WANG,B.WEST,G.WOLF, JRNL AUTH 9 Q.XU,K.O.HODGSON,J.WOOLEY,I.A.WILSON JRNL TITL CRYSTAL STRUCTURE OF A TYPE II QUINOLIC ACID JRNL TITL 2 PHOSPHORIBOSYLTRANSFERASE (TM1645) FROM THERMOTOGA MARITIMA JRNL TITL 3 AT 2.50 A RESOLUTION JRNL REF PROTEINS V. 55 768 2004 JRNL REFN ISSN 0887-3585 JRNL PMID 15103640 JRNL DOI 10.1002/PROT.20029 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 27683 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1510 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1886 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3300 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4074 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 113 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 63.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.48000 REMARK 3 B22 (A**2) : 0.40000 REMARK 3 B33 (A**2) : -3.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.338 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.271 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.212 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.677 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4132 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3988 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5578 ; 1.516 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9240 ; 0.835 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 527 ; 6.607 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 173 ;39.854 ;24.855 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 784 ;17.661 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;19.228 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 685 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4529 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 762 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 833 ; 0.225 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4023 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2754 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 134 ; 0.182 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 5 ; 0.254 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 51 ; 0.296 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.188 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2628 ; 0.728 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4250 ; 1.388 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1504 ; 2.092 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1328 ; 3.795 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 273 4 REMARK 3 1 B 1 B 273 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 3991 ; 0.36 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 3991 ; 0.45 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 272 REMARK 3 RESIDUE RANGE : B 1 B 272 REMARK 3 ORIGIN FOR THE GROUP (A): 25.6000 22.7430 41.3740 REMARK 3 T TENSOR REMARK 3 T11: 0.0311 T22: 0.0583 REMARK 3 T33: 0.1054 T12: -0.0072 REMARK 3 T13: -0.0555 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.2931 L22: 0.9205 REMARK 3 L33: 1.0042 L12: 0.1240 REMARK 3 L13: 0.2731 L23: 0.9223 REMARK 3 S TENSOR REMARK 3 S11: 0.1190 S12: -0.0258 S13: -0.0888 REMARK 3 S21: 0.3037 S22: -0.0139 S23: -0.1046 REMARK 3 S31: 0.3655 S32: -0.0764 S33: -0.1051 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. UNEXPLAINED BLOB OF DENSITY AROUND REMARK 3 RESIDUE 75 IN BOTH CHAINS, TOO LARGE AND FAR FROM RESIDUES TO BE REMARK 3 WATER, NO METALS IN CRYSTALLIZATION SOLUTION. 2. RESIDUAL REMARK 3 DENSITY FOR RESIDUE 209 COULD NOT BE MODELLED WITHOUT VIOLATING REMARK 3 RAMACHANDRAN ANGLES; BUT MODELLED CONFORMATION CORRESPONDS TO REMARK 3 HOMOLOGUE 1QPN. 3. HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1O4U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-03. REMARK 100 THE DEPOSITION ID IS D_1000001805. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.972386 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : FLAT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 4.2), CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29194 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.501 REMARK 200 RESOLUTION RANGE LOW (A) : 38.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.54600 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1QPN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG-6000, 0.1M MES PH 6.0, VAPOR REMARK 280 DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 48.18550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.06250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 69.18600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 48.18550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.06250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.18600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 48.18550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.06250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 69.18600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 48.18550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.06250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 69.18600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 PRO A 145 REMARK 465 HIS A 146 REMARK 465 ARG A 147 REMARK 465 LEU A 148 REMARK 465 ASP A 149 REMARK 465 LEU A 150 REMARK 465 SER A 151 REMARK 465 GLY A 152 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 PRO B 145 REMARK 465 HIS B 146 REMARK 465 ARG B 147 REMARK 465 LEU B 148 REMARK 465 ASP B 149 REMARK 465 LEU B 150 REMARK 465 SER B 151 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 2 CG CD OE1 OE2 REMARK 470 LYS A 18 CE NZ REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 LYS A 125 CE NZ REMARK 470 LYS A 135 CD CE NZ REMARK 470 LYS B 3 CD CE NZ REMARK 470 LYS B 116 CG CD CE NZ REMARK 470 LYS B 125 CE NZ REMARK 470 LEU B 127 CG CD1 CD2 REMARK 470 PHE B 180 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN B 209 CG OD1 ND2 REMARK 470 GLU B 240 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 41 O HOH A 316 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 144 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 196 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ASP A 203 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP A 208 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 217 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 246 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 246 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 19 138.77 -170.76 REMARK 500 HIS A 117 -61.10 -100.44 REMARK 500 ASN A 209 69.06 35.54 REMARK 500 ASN A 226 96.38 -168.87 REMARK 500 PHE B 264 -2.20 -140.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU B 16 GLY B 17 -39.80 REMARK 500 THR B 39 GLU B 40 -148.52 REMARK 500 ASN B 41 VAL B 42 -146.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 283502 RELATED DB: TARGETDB DBREF 1O4U A 1 273 UNP Q9X1X8 Q9X1X8_THEMA 1 273 DBREF 1O4U B 1 273 UNP Q9X1X8 Q9X1X8_THEMA 1 273 SEQADV 1O4U MET A -11 UNP Q9X1X8 LEADER SEQUENCE SEQADV 1O4U GLY A -10 UNP Q9X1X8 LEADER SEQUENCE SEQADV 1O4U SER A -9 UNP Q9X1X8 LEADER SEQUENCE SEQADV 1O4U ASP A -8 UNP Q9X1X8 LEADER SEQUENCE SEQADV 1O4U LYS A -7 UNP Q9X1X8 LEADER SEQUENCE SEQADV 1O4U ILE A -6 UNP Q9X1X8 LEADER SEQUENCE SEQADV 1O4U HIS A -5 UNP Q9X1X8 LEADER SEQUENCE SEQADV 1O4U HIS A -4 UNP Q9X1X8 LEADER SEQUENCE SEQADV 1O4U HIS A -3 UNP Q9X1X8 LEADER SEQUENCE SEQADV 1O4U HIS A -2 UNP Q9X1X8 LEADER SEQUENCE SEQADV 1O4U HIS A -1 UNP Q9X1X8 LEADER SEQUENCE SEQADV 1O4U HIS A 0 UNP Q9X1X8 LEADER SEQUENCE SEQADV 1O4U MET B -11 UNP Q9X1X8 LEADER SEQUENCE SEQADV 1O4U GLY B -10 UNP Q9X1X8 LEADER SEQUENCE SEQADV 1O4U SER B -9 UNP Q9X1X8 LEADER SEQUENCE SEQADV 1O4U ASP B -8 UNP Q9X1X8 LEADER SEQUENCE SEQADV 1O4U LYS B -7 UNP Q9X1X8 LEADER SEQUENCE SEQADV 1O4U ILE B -6 UNP Q9X1X8 LEADER SEQUENCE SEQADV 1O4U HIS B -5 UNP Q9X1X8 LEADER SEQUENCE SEQADV 1O4U HIS B -4 UNP Q9X1X8 LEADER SEQUENCE SEQADV 1O4U HIS B -3 UNP Q9X1X8 LEADER SEQUENCE SEQADV 1O4U HIS B -2 UNP Q9X1X8 LEADER SEQUENCE SEQADV 1O4U HIS B -1 UNP Q9X1X8 LEADER SEQUENCE SEQADV 1O4U HIS B 0 UNP Q9X1X8 LEADER SEQUENCE SEQRES 1 A 285 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 285 GLU LYS ILE LEU ASP LEU LEU MET SER PHE VAL LYS GLU SEQRES 3 A 285 ASP GLU GLY LYS LEU ASP LEU ALA SER PHE PRO LEU ARG SEQRES 4 A 285 ASN THR THR ALA GLY ALA HIS LEU LEU LEU LYS THR GLU SEQRES 5 A 285 ASN VAL VAL ALA SER GLY ILE GLU VAL SER ARG MET PHE SEQRES 6 A 285 LEU GLU LYS MET GLY LEU LEU SER LYS PHE ASN VAL GLU SEQRES 7 A 285 ASP GLY GLU TYR LEU GLU GLY THR GLY VAL ILE GLY GLU SEQRES 8 A 285 ILE GLU GLY ASN THR TYR LYS LEU LEU VAL ALA GLU ARG SEQRES 9 A 285 THR LEU LEU ASN VAL LEU SER VAL MET PHE SER VAL ALA SEQRES 10 A 285 THR THR THR ARG ARG PHE ALA GLU LYS LEU LYS HIS ALA SEQRES 11 A 285 LYS ILE ALA ALA THR ARG LYS ILE LEU PRO GLY LEU GLY SEQRES 12 A 285 VAL LEU GLN LYS ILE ALA VAL VAL HIS GLY GLY GLY ASP SEQRES 13 A 285 PRO HIS ARG LEU ASP LEU SER GLY CYS VAL MET ILE LYS SEQRES 14 A 285 ASP ASN HIS LEU LYS MET TYR GLY SER ALA GLU ARG ALA SEQRES 15 A 285 VAL GLN GLU VAL ARG LYS ILE ILE PRO PHE THR THR LYS SEQRES 16 A 285 ILE GLU VAL GLU VAL GLU ASN LEU GLU ASP ALA LEU ARG SEQRES 17 A 285 ALA VAL GLU ALA GLY ALA ASP ILE VAL MET LEU ASP ASN SEQRES 18 A 285 LEU SER PRO GLU GLU VAL LYS ASP ILE SER ARG ARG ILE SEQRES 19 A 285 LYS ASP ILE ASN PRO ASN VAL ILE VAL GLU VAL SER GLY SEQRES 20 A 285 GLY ILE THR GLU GLU ASN VAL SER LEU TYR ASP PHE GLU SEQRES 21 A 285 THR VAL ASP VAL ILE SER SER SER ARG LEU THR LEU GLN SEQRES 22 A 285 GLU VAL PHE VAL ASP LEU SER LEU GLU ILE GLN ARG SEQRES 1 B 285 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 B 285 GLU LYS ILE LEU ASP LEU LEU MET SER PHE VAL LYS GLU SEQRES 3 B 285 ASP GLU GLY LYS LEU ASP LEU ALA SER PHE PRO LEU ARG SEQRES 4 B 285 ASN THR THR ALA GLY ALA HIS LEU LEU LEU LYS THR GLU SEQRES 5 B 285 ASN VAL VAL ALA SER GLY ILE GLU VAL SER ARG MET PHE SEQRES 6 B 285 LEU GLU LYS MET GLY LEU LEU SER LYS PHE ASN VAL GLU SEQRES 7 B 285 ASP GLY GLU TYR LEU GLU GLY THR GLY VAL ILE GLY GLU SEQRES 8 B 285 ILE GLU GLY ASN THR TYR LYS LEU LEU VAL ALA GLU ARG SEQRES 9 B 285 THR LEU LEU ASN VAL LEU SER VAL MET PHE SER VAL ALA SEQRES 10 B 285 THR THR THR ARG ARG PHE ALA GLU LYS LEU LYS HIS ALA SEQRES 11 B 285 LYS ILE ALA ALA THR ARG LYS ILE LEU PRO GLY LEU GLY SEQRES 12 B 285 VAL LEU GLN LYS ILE ALA VAL VAL HIS GLY GLY GLY ASP SEQRES 13 B 285 PRO HIS ARG LEU ASP LEU SER GLY CYS VAL MET ILE LYS SEQRES 14 B 285 ASP ASN HIS LEU LYS MET TYR GLY SER ALA GLU ARG ALA SEQRES 15 B 285 VAL GLN GLU VAL ARG LYS ILE ILE PRO PHE THR THR LYS SEQRES 16 B 285 ILE GLU VAL GLU VAL GLU ASN LEU GLU ASP ALA LEU ARG SEQRES 17 B 285 ALA VAL GLU ALA GLY ALA ASP ILE VAL MET LEU ASP ASN SEQRES 18 B 285 LEU SER PRO GLU GLU VAL LYS ASP ILE SER ARG ARG ILE SEQRES 19 B 285 LYS ASP ILE ASN PRO ASN VAL ILE VAL GLU VAL SER GLY SEQRES 20 B 285 GLY ILE THR GLU GLU ASN VAL SER LEU TYR ASP PHE GLU SEQRES 21 B 285 THR VAL ASP VAL ILE SER SER SER ARG LEU THR LEU GLN SEQRES 22 B 285 GLU VAL PHE VAL ASP LEU SER LEU GLU ILE GLN ARG FORMUL 3 HOH *113(H2 O) HELIX 1 1 MET A 1 GLY A 17 1 17 HELIX 2 2 SER A 23 ARG A 27 5 5 HELIX 3 3 GLY A 46 MET A 57 1 12 HELIX 4 4 THR A 84 LYS A 114 1 31 HELIX 5 5 LEU A 130 GLY A 142 1 13 HELIX 6 6 LYS A 157 MET A 163 1 7 HELIX 7 7 ALA A 167 LYS A 176 1 10 HELIX 8 8 ASN A 190 ALA A 200 1 11 HELIX 9 9 SER A 211 ASN A 226 1 16 HELIX 10 10 ASN A 241 ASP A 246 5 6 HELIX 11 11 SER A 256 GLN A 261 1 6 HELIX 12 12 MET B 1 GLY B 17 1 17 HELIX 13 13 SER B 23 ARG B 27 5 5 HELIX 14 14 GLY B 46 GLY B 58 1 13 HELIX 15 15 THR B 84 GLU B 113 1 30 HELIX 16 16 LEU B 130 GLY B 142 1 13 HELIX 17 17 LYS B 157 MET B 163 1 7 HELIX 18 18 ALA B 167 LYS B 176 1 10 HELIX 19 19 ASN B 190 ALA B 200 1 11 HELIX 20 20 SER B 211 ASN B 226 1 16 HELIX 21 21 ASN B 241 ASP B 246 5 6 HELIX 22 22 SER B 256 GLN B 261 1 6 SHEET 1 A 4 LEU A 60 PHE A 63 0 SHEET 2 A 4 GLY A 75 ASN A 83 -1 O GLU A 81 N LEU A 60 SHEET 3 A 4 THR A 30 LEU A 37 -1 N LEU A 37 O GLY A 75 SHEET 4 A 4 LEU A 267 ILE A 271 -1 O SER A 268 N LEU A 36 SHEET 1 B 2 ASN A 41 VAL A 43 0 SHEET 2 B 2 TYR A 70 GLU A 72 -1 O LEU A 71 N VAL A 42 SHEET 1 C 6 LYS A 119 ALA A 121 0 SHEET 2 C 6 VAL A 252 SER A 255 1 O ILE A 253 N LYS A 119 SHEET 3 C 6 ILE A 230 GLY A 235 1 N VAL A 233 O SER A 254 SHEET 4 C 6 ILE A 204 ASP A 208 1 N VAL A 205 O ILE A 230 SHEET 5 C 6 ILE A 184 VAL A 188 1 N VAL A 186 O MET A 206 SHEET 6 C 6 VAL A 154 ILE A 156 1 N VAL A 154 O GLU A 185 SHEET 1 D 4 LEU B 60 PHE B 63 0 SHEET 2 D 4 GLY B 75 ASN B 83 -1 O GLU B 81 N LEU B 60 SHEET 3 D 4 THR B 30 LEU B 37 -1 N LEU B 37 O GLY B 75 SHEET 4 D 4 LEU B 267 GLN B 272 -1 O SER B 268 N LEU B 36 SHEET 1 E 2 ASN B 41 VAL B 43 0 SHEET 2 E 2 TYR B 70 GLU B 72 -1 O LEU B 71 N VAL B 42 SHEET 1 F 6 LYS B 119 ALA B 121 0 SHEET 2 F 6 VAL B 252 SER B 255 1 O ILE B 253 N LYS B 119 SHEET 3 F 6 ILE B 230 GLY B 235 1 N VAL B 233 O SER B 254 SHEET 4 F 6 ILE B 204 ASP B 208 1 N LEU B 207 O GLU B 232 SHEET 5 F 6 LYS B 183 VAL B 188 1 N VAL B 188 O ASP B 208 SHEET 6 F 6 CYS B 153 ILE B 156 1 N ILE B 156 O GLU B 185 CISPEP 1 GLU A 16 GLY A 17 0 -22.99 CRYST1 96.371 126.125 138.372 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010377 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007929 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007227 0.00000 MASTER 432 0 0 22 24 0 0 6 0 0 0 44 END