HEADER OXIDOREDUCTASE 12-FEB-03 1O20 TITLE CRYSTAL STRUCTURE OF GAMMA-GLUTAMYL PHOSPHATE REDUCTASE (TM0293) FROM TITLE 2 THERMOTOGA MARITIMA AT 2.00 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAMMA-GLUTAMYL PHOSPHATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GPR, GLUTAMATE-5-SEMIALDEHYDE DEHYDROGENASE, GLUTAMYL-GAMMA- COMPND 5 SEMIALDEHYDE DEHYDROGENASE, GSA DEHYDROGENASE; COMPND 6 EC: 1.2.1.41; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM0293; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TM0293, GAMMA-GLUTAMYL PHOSPHATE REDUCTASE, STRUCTURAL GENOMICS, KEYWDS 2 JCSG, PSI, PROTEIN STRUCTURE INITIATIVE, JOINT CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 18-JUL-18 1O20 1 REMARK REVDAT 7 04-OCT-17 1O20 1 REMARK REVDAT 6 13-JUL-11 1O20 1 VERSN REVDAT 5 24-FEB-09 1O20 1 VERSN REVDAT 4 18-JAN-05 1O20 1 AUTHOR KEYWDS REMARK REVDAT 3 27-JAN-04 1O20 1 JRNL REVDAT 2 22-JUL-03 1O20 1 REMARK REVDAT 1 01-APR-03 1O20 0 JRNL AUTH R.PAGE,M.S.NELSON,F.VON DELFT,M.A.ELSLIGER,J.M.CANAVES, JRNL AUTH 2 L.S.BRINEN,X.DAI,A.M.DEACON,R.FLOYD,A.GODZIK,C.GRITTINI, JRNL AUTH 3 S.K.GRZECHNIK,L.JAROSZEWSKI,H.E.KLOCK,E.KOESEMA,J.S.KOVARIK, JRNL AUTH 4 A.KREUSCH,P.KUHN,S.A.LESLEY,D.MCMULLAN,T.M.MCPHILLIPS, JRNL AUTH 5 M.D.MILLER,A.MORSE,K.MOY,J.OUYANG,A.ROBB,K.RODRIGUES, JRNL AUTH 6 R.SCHWARZENBACHER,G.SPRAGGON,R.C.STEVENS,H.VAN DEN BEDEM, JRNL AUTH 7 J.VELASQUEZ,J.VINCENT,X.WANG,B.WEST,G.WOLF,K.O.HODGSON, JRNL AUTH 8 J.WOOLEY,I.A.WILSON JRNL TITL CRYSTAL STRUCTURE OF GAMMA-GLUTAMYL PHOSPHATE REDUCTASE JRNL TITL 2 (TM0293) FROM THERMOTOGA MARITIMA AT 2.0 A RESOLUTION. JRNL REF PROTEINS V. 54 157 2004 JRNL REFN ISSN 0887-3585 JRNL PMID 14705032 JRNL DOI 10.1002/PROT.10562 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 30837 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.600 REMARK 3 FREE R VALUE TEST SET COUNT : 2521 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1866 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE SET COUNT : 137 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3227 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 299 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.39000 REMARK 3 B22 (A**2) : 1.02000 REMARK 3 B33 (A**2) : -0.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.153 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.584 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3284 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3136 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4440 ; 1.532 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7269 ; 0.843 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 413 ; 6.116 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 524 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3618 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 638 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 663 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3606 ; 0.244 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2063 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 229 ; 0.178 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.145 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 128 ; 0.357 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.337 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2059 ; 0.816 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3342 ; 1.490 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1225 ; 2.550 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1098 ; 4.321 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 415 REMARK 3 ORIGIN FOR THE GROUP (A): 7.6053 41.9533 67.2913 REMARK 3 T TENSOR REMARK 3 T11: 0.0831 T22: 0.0532 REMARK 3 T33: 0.0414 T12: 0.0661 REMARK 3 T13: 0.0074 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.7329 L22: 0.1585 REMARK 3 L33: 0.0234 L12: 0.0216 REMARK 3 L13: 0.0953 L23: 0.0582 REMARK 3 S TENSOR REMARK 3 S11: 0.0301 S12: 0.1486 S13: -0.1057 REMARK 3 S21: -0.0841 S22: -0.0370 S23: -0.0131 REMARK 3 S31: 0.0402 S32: 0.0096 S33: 0.0069 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THERE IS PROMINENT DIFFERENCE DENSITY REMARK 3 ATTACHED TO CYS255, POSSIBLY THE RESULT OF PARTIAL OXIDATION, REMARK 3 WHICH WAS HOWEVER NOT MODELLED. CNS/O WERE ALSO USED IN REMARK 3 REFINEMENT. REMARK 4 REMARK 4 1O20 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-FEB-03. REMARK 100 THE DEPOSITION ID IS D_1000001704. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.40 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793, 0.9566, 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, CCP4 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, CCP4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34597 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.550 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 20.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.44 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.60700 REMARK 200 FOR SHELL : 3.330 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG MME 5000(30%), 0.06M TRIS REMARK 280 CL(1M), 0.04M TRIS_BASE(1M), VAPOR DIFFUSION,SITTING DROP, REMARK 280 NANODROP, PH 8.40, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.57500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.66500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.57500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.66500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 52.57500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.66500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 52.57500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.66500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 THE BIOLOGICAL UNIT IS A TETRAMER WITH 222 POINT SYMMETRY, REMARK 300 FORMED BY CRYSTALLOGRAPHIC SYMMETRY, AS ADJUDGED BY REMARK 300 EXTENSIVE HYDROPHOBIC CONTACTS BETWEEN THESE UNITS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 111.33000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 173.66000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 111.33000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 173.66000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 5 CG CD1 CD2 REMARK 470 GLU A 6 CD OE1 OE2 REMARK 470 GLU A 53 CG CD OE1 OE2 REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 ARG A 183 CD NE CZ NH1 NH2 REMARK 470 GLU A 194 CG CD OE1 OE2 REMARK 470 LYS A 238 CD CE NZ REMARK 470 LYS A 269 NZ REMARK 470 GLU A 290 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 319 O HOH A 969 2.06 REMARK 500 O HOH A 664 O HOH A 1003 2.15 REMARK 500 O HOH A 518 O HOH A 821 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1002 O HOH A 1071 2565 1.91 REMARK 500 O HOH A 860 O HOH A 860 4567 1.95 REMARK 500 O HOH A 1002 O HOH A 1070 2565 1.97 REMARK 500 O HOH A 664 O HOH A 962 2565 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 16 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 388 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 388 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 392 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 392 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 122 -118.53 -103.67 REMARK 500 HIS A 338 -85.43 -93.88 REMARK 500 ASP A 372 137.12 -177.93 REMARK 500 ARG A 388 52.45 -98.02 REMARK 500 PHE A 389 119.60 -165.04 REMARK 500 HIS A 390 -61.42 75.36 REMARK 500 THR A 402 -148.87 -120.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 282169 RELATED DB: TARGETDB DBREF 1O20 A 1 415 UNP Q9WYC9 PROA_THEMA 1 415 SEQADV 1O20 MSE A -11 UNP Q9WYC9 LEADER SEQUENCE SEQADV 1O20 GLY A -10 UNP Q9WYC9 LEADER SEQUENCE SEQADV 1O20 SER A -9 UNP Q9WYC9 LEADER SEQUENCE SEQADV 1O20 ASP A -8 UNP Q9WYC9 LEADER SEQUENCE SEQADV 1O20 LYS A -7 UNP Q9WYC9 LEADER SEQUENCE SEQADV 1O20 ILE A -6 UNP Q9WYC9 LEADER SEQUENCE SEQADV 1O20 HIS A -5 UNP Q9WYC9 LEADER SEQUENCE SEQADV 1O20 HIS A -4 UNP Q9WYC9 LEADER SEQUENCE SEQADV 1O20 HIS A -3 UNP Q9WYC9 LEADER SEQUENCE SEQADV 1O20 HIS A -2 UNP Q9WYC9 LEADER SEQUENCE SEQADV 1O20 HIS A -1 UNP Q9WYC9 LEADER SEQUENCE SEQADV 1O20 HIS A 0 UNP Q9WYC9 LEADER SEQUENCE SEQADV 1O20 MSE A 1 UNP Q9WYC9 MET 1 MODIFIED RESIDUE SEQADV 1O20 MSE A 78 UNP Q9WYC9 MET 78 MODIFIED RESIDUE SEQADV 1O20 MSE A 189 UNP Q9WYC9 MET 189 MODIFIED RESIDUE SEQRES 1 A 427 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 427 ASP GLU LEU LEU GLU LYS ALA LYS LYS VAL ARG GLU ALA SEQRES 3 A 427 TRP ASP VAL LEU ARG ASN ALA THR THR ARG GLU LYS ASN SEQRES 4 A 427 LYS ALA ILE LYS LYS ILE ALA GLU LYS LEU ASP GLU ARG SEQRES 5 A 427 ARG LYS GLU ILE LEU GLU ALA ASN ARG ILE ASP VAL GLU SEQRES 6 A 427 LYS ALA ARG GLU ARG GLY VAL LYS GLU SER LEU VAL ASP SEQRES 7 A 427 ARG LEU ALA LEU ASN ASP LYS ARG ILE ASP GLU MSE ILE SEQRES 8 A 427 LYS ALA CYS GLU THR VAL ILE GLY LEU LYS ASP PRO VAL SEQRES 9 A 427 GLY GLU VAL ILE ASP SER TRP VAL ARG GLU ASP GLY LEU SEQRES 10 A 427 ARG ILE ALA ARG VAL ARG VAL PRO ILE GLY PRO ILE GLY SEQRES 11 A 427 ILE ILE TYR GLU SER ARG PRO ASN VAL THR VAL GLU THR SEQRES 12 A 427 THR ILE LEU ALA LEU LYS SER GLY ASN THR ILE LEU LEU SEQRES 13 A 427 ARG GLY GLY SER ASP ALA LEU ASN SER ASN LYS ALA ILE SEQRES 14 A 427 VAL SER ALA ILE ARG GLU ALA LEU LYS GLU THR GLU ILE SEQRES 15 A 427 PRO GLU SER SER VAL GLU PHE ILE GLU ASN THR ASP ARG SEQRES 16 A 427 SER LEU VAL LEU GLU MSE ILE ARG LEU ARG GLU TYR LEU SEQRES 17 A 427 SER LEU VAL ILE PRO ARG GLY GLY TYR GLY LEU ILE SER SEQRES 18 A 427 PHE VAL ARG ASP ASN ALA THR VAL PRO VAL LEU GLU THR SEQRES 19 A 427 GLY VAL GLY ASN CYS HIS ILE PHE VAL ASP GLU SER ALA SEQRES 20 A 427 ASP LEU LYS LYS ALA VAL PRO VAL ILE ILE ASN ALA LYS SEQRES 21 A 427 THR GLN ARG PRO GLY THR CYS ASN ALA ALA GLU LYS LEU SEQRES 22 A 427 LEU VAL HIS GLU LYS ILE ALA LYS GLU PHE LEU PRO VAL SEQRES 23 A 427 ILE VAL GLU GLU LEU ARG LYS HIS GLY VAL GLU VAL ARG SEQRES 24 A 427 GLY CYS GLU LYS THR ARG GLU ILE VAL PRO ASP VAL VAL SEQRES 25 A 427 PRO ALA THR GLU ASP ASP TRP PRO THR GLU TYR LEU ASP SEQRES 26 A 427 LEU ILE ILE ALA ILE LYS VAL VAL LYS ASN VAL ASP GLU SEQRES 27 A 427 ALA ILE GLU HIS ILE LYS LYS TYR SER THR GLY HIS SER SEQRES 28 A 427 GLU SER ILE LEU THR GLU ASN TYR SER ASN ALA LYS LYS SEQRES 29 A 427 PHE VAL SER GLU ILE ASP ALA ALA ALA VAL TYR VAL ASN SEQRES 30 A 427 ALA SER THR ARG PHE THR ASP GLY GLY GLN PHE GLY PHE SEQRES 31 A 427 GLY ALA GLU ILE GLY ILE SER THR GLN ARG PHE HIS ALA SEQRES 32 A 427 ARG GLY PRO VAL GLY LEU ARG GLU LEU THR THR TYR LYS SEQRES 33 A 427 PHE VAL VAL LEU GLY GLU TYR HIS VAL ARG GLU MODRES 1O20 MSE A 78 MET SELENOMETHIONINE MODRES 1O20 MSE A 189 MET SELENOMETHIONINE HET MSE A 78 8 HET MSE A 189 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 HOH *299(H2 O) HELIX 1 1 ASP A 2 ARG A 19 1 18 HELIX 2 2 THR A 22 ARG A 40 1 19 HELIX 3 3 ARG A 40 ARG A 58 1 19 HELIX 4 4 LYS A 61 ALA A 69 1 9 HELIX 5 5 ASN A 71 LEU A 88 1 18 HELIX 6 6 PRO A 125 SER A 138 1 14 HELIX 7 7 GLY A 147 ASP A 149 5 3 HELIX 8 8 ALA A 150 LYS A 166 1 17 HELIX 9 9 PRO A 171 SER A 173 5 3 HELIX 10 10 ARG A 183 ILE A 190 1 8 HELIX 11 11 GLY A 204 ALA A 215 1 12 HELIX 12 12 ASP A 236 GLN A 250 1 15 HELIX 13 13 GLU A 265 HIS A 282 1 18 HELIX 14 14 CYS A 289 VAL A 296 1 8 HELIX 15 15 THR A 303 TRP A 307 5 5 HELIX 16 16 ASN A 323 SER A 335 1 13 HELIX 17 17 ASN A 346 ILE A 357 1 12 HELIX 18 18 SER A 367 THR A 371 5 5 HELIX 19 19 LEU A 397 GLU A 399 5 3 SHEET 1 A 3 VAL A 95 VAL A 100 0 SHEET 2 A 3 ARG A 106 PRO A 113 -1 O ILE A 107 N TRP A 99 SHEET 3 A 3 THR A 401 LEU A 408 -1 O LYS A 404 N VAL A 110 SHEET 1 B 4 VAL A 175 PHE A 177 0 SHEET 2 B 4 ILE A 142 ARG A 145 1 N LEU A 144 O GLU A 176 SHEET 3 B 4 ILE A 117 ILE A 120 1 N ILE A 117 O LEU A 143 SHEET 4 B 4 LEU A 198 PRO A 201 1 O LEU A 198 N GLY A 118 SHEET 1 C 7 VAL A 300 PRO A 301 0 SHEET 2 C 7 GLU A 285 GLY A 288 1 N GLY A 288 O VAL A 300 SHEET 3 C 7 ILE A 315 VAL A 321 1 O ILE A 316 N ARG A 287 SHEET 4 C 7 ALA A 258 HIS A 264 1 N LEU A 261 O ALA A 317 SHEET 5 C 7 CYS A 227 VAL A 231 1 N VAL A 231 O LEU A 262 SHEET 6 C 7 SER A 339 LEU A 343 1 O LEU A 343 N PHE A 230 SHEET 7 C 7 ALA A 361 VAL A 364 1 O TYR A 363 N GLU A 340 SHEET 1 D 2 ILE A 384 SER A 385 0 SHEET 2 D 2 GLY A 393 PRO A 394 -1 O GLY A 393 N SER A 385 LINK C GLU A 77 N MSE A 78 1555 1555 1.33 LINK C MSE A 78 N ILE A 79 1555 1555 1.34 LINK C GLU A 188 N MSE A 189 1555 1555 1.33 LINK C MSE A 189 N ILE A 190 1555 1555 1.32 CRYST1 105.150 111.330 86.830 90.00 90.00 90.00 C 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009510 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008982 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011517 0.00000 MASTER 415 0 2 19 16 0 0 6 0 0 0 33 END