HEADER ISOMERASE 12-FEB-03 1O1X TITLE CRYSTAL STRUCTURE OF A RIBOSE 5-PHOSPHATE ISOMERASE RPIB (TM1080) FROM TITLE 2 THERMOTOGA MARITIMA AT 1.90 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSE-5-PHOSPHATE ISOMERASE RPIB; COMPND 3 CHAIN: A; COMPND 4 EC: 5.3.1.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM1080; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 10 24-JUL-19 1O1X 1 REMARK LINK REVDAT 9 18-JUL-18 1O1X 1 REMARK REVDAT 8 04-OCT-17 1O1X 1 REMARK REVDAT 7 13-JUL-11 1O1X 1 VERSN REVDAT 6 23-MAR-11 1O1X 1 TITLE KEYWDS REVDAT 5 24-FEB-09 1O1X 1 VERSN REVDAT 4 18-JAN-05 1O1X 1 AUTHOR KEYWDS REMARK REVDAT 3 03-AUG-04 1O1X 1 JRNL COMPND TITLE KEYWDS REVDAT 2 22-JUL-03 1O1X 1 JRNL REVDAT 1 01-APR-03 1O1X 0 JRNL AUTH Q.XU,R.SCHWARZENBACHER,D.MCMULLAN,F.VON DELFT,L.S.BRINEN, JRNL AUTH 2 J.M.CANAVES,X.DAI,A.M.DEACON,M.A.ELSLIGER,S.ESHAGI,R.FLOYD, JRNL AUTH 3 A.GODZIK,C.GRITTINI,S.K.GRZECHNIK,L.JAROSZEWSKI,C.KARLAK, JRNL AUTH 4 H.E.KLOCK,E.KOESEMA,J.S.KOVARIK,A.KREUSCH,P.KUHN,S.A.LESLEY, JRNL AUTH 5 I.LEVIN,T.M.MCPHILLIPS,M.D.MILLER,A.MORSE,K.MOY,J.OUYANG, JRNL AUTH 6 R.PAGE,K.QUIJANO,A.ROBB,G.SPRAGGON,F.STEVENS, JRNL AUTH 7 H.VAN DEN BEDEM,J.VELASQUEZ,J.VINCENT,X.WANG,B.WEST,G.WOLF, JRNL AUTH 8 K.O.HODGSON,J.WOOLEY,I.A.WILSON JRNL TITL CRYSTAL STRUCTURE OF A RIBOSE-5-PHOSPHATE ISOMERASE RPIB JRNL TITL 2 (TM1080) FROM THERMOTOGA MARITIMA AT 1.90 A RESOLUTION. JRNL REF PROTEINS V. 56 171 2004 JRNL REFN ISSN 0887-3585 JRNL PMID 15162497 JRNL DOI 10.1002/PROT.20129 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 15168 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.118 REMARK 3 R VALUE (WORKING SET) : 0.117 REMARK 3 FREE R VALUE : 0.138 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 803 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1030 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.1900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1139 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 212 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.40000 REMARK 3 B22 (A**2) : -1.10000 REMARK 3 B33 (A**2) : -0.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.086 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.081 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.442 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.974 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1199 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1122 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1622 ; 1.518 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2603 ; 0.934 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 144 ; 5.529 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 58 ;35.571 ;23.448 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 215 ;11.572 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;15.732 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 183 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1314 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 247 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 220 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1269 ; 0.239 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 702 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 140 ; 0.240 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.178 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 90 ; 0.308 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.259 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 724 ; 0.772 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1167 ; 1.467 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 475 ; 2.562 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 455 ; 4.246 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 143 REMARK 3 ORIGIN FOR THE GROUP (A): 22.9050 7.1650 29.0850 REMARK 3 T TENSOR REMARK 3 T11: 0.0047 T22: -0.0036 REMARK 3 T33: -0.0011 T12: 0.0014 REMARK 3 T13: -0.0128 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 1.1105 L22: 0.8983 REMARK 3 L33: 1.1127 L12: -0.1773 REMARK 3 L13: -0.2288 L23: 0.0830 REMARK 3 S TENSOR REMARK 3 S11: -0.0173 S12: 0.0099 S13: -0.0212 REMARK 3 S21: -0.0314 S22: 0.0247 S23: 0.0693 REMARK 3 S31: -0.0308 S32: -0.0846 S33: -0.0074 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THERE IS WEAK DIFFERENCE DENSITY AT THE REMARK 3 N-TERMINUS, APPARENTLY INDICATING AT LEAST ONE MORE HIS- TAG REMARK 3 RESIDUE; IT WAS NOT MODELLED BECAUSE AT FULL OCCUPANCY, IT REMARK 3 RESULTS IN A WORSE RFREE. SEVERAL LARGE BLOBS OF DIFFERENCE REMARK 3 DENSITY THAT COULD NOT BE UNAMBIGUOUSLY IDENTIFIED, AND HAVE REMARK 3 BEEN MODELLED AS CLOSELY-SPACED SOLVENT INSTEAD. THESE OCCUR REMARK 3 NEAR THE FOLLOWING:A25, A51, A60, A82, A114, A127, A133. INITIAL REMARK 3 REFINEMENT WAS PERFORMED USING CNS. REBUILDING WAS PERFORMED REMARK 3 USING XFIT. REMARK 4 REMARK 4 1O1X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-FEB-03. REMARK 100 THE DEPOSITION ID IS D_1000001701. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97931, 0.97892 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : FLAT MIRROR,SINGLE CRYSTAL REMARK 200 SI(311) BENT MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, XFIT REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15973 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 29.788 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.28400 REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40 % (+/-)-2-METHYL-2,4-PENTANEDIOL; REMARK 280 0.1 M HEPES PH 7.0, VAPOR DIFFUSION,SITTING DROP,NANODROP, REMARK 280 TEMPERATURE 277K, PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.74500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.94500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.87000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.74500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.94500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.87000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.74500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 36.94500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.87000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.74500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 36.94500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 43.87000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 THE BIOLOGICAL UNIT IS A TETRAMER WITH 222 POINT SYMMETRY, REMARK 300 FORMED BY CRYSTALLOGRAPHIC SYMMETRY, AS ADJUDGED BY REMARK 300 EXTENSIVE HYDROPHOBIC CONTACTS BETWEEN THESE UNITS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 10130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 61.49000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 61.49000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 87.74000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 87.74000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 496 O HOH A 497 1.86 REMARK 500 O HOH A 476 O HOH A 478 1.90 REMARK 500 O HOH A 477 O HOH A 478 2.10 REMARK 500 O HOH A 493 O HOH A 494 2.10 REMARK 500 O HOH A 479 O HOH A 480 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 482 O HOH A 483 3656 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 141 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 282947 RELATED DB: TARGETDB DBREF 1O1X A 2 143 UNP Q9X0G9 Q9X0G9_THEMA 2 143 SEQADV 1O1X MSE A -11 UNP Q9X0G9 LEADER SEQUENCE SEQADV 1O1X GLY A -10 UNP Q9X0G9 LEADER SEQUENCE SEQADV 1O1X SER A -9 UNP Q9X0G9 LEADER SEQUENCE SEQADV 1O1X ASP A -8 UNP Q9X0G9 LEADER SEQUENCE SEQADV 1O1X LYS A -7 UNP Q9X0G9 LEADER SEQUENCE SEQADV 1O1X ILE A -6 UNP Q9X0G9 LEADER SEQUENCE SEQADV 1O1X HIS A -5 UNP Q9X0G9 LEADER SEQUENCE SEQADV 1O1X HIS A -4 UNP Q9X0G9 LEADER SEQUENCE SEQADV 1O1X HIS A -3 UNP Q9X0G9 LEADER SEQUENCE SEQADV 1O1X HIS A -2 UNP Q9X0G9 LEADER SEQUENCE SEQADV 1O1X HIS A -1 UNP Q9X0G9 LEADER SEQUENCE SEQADV 1O1X HIS A 0 UNP Q9X0G9 LEADER SEQUENCE SEQADV 1O1X VAL A 1 UNP Q9X0G9 LEADER SEQUENCE SEQADV 1O1X OCS A 65 UNP Q9X0G9 CYS 65 MODIFIED RESIDUE SEQADV 1O1X MSE A 71 UNP Q9X0G9 MET 71 MODIFIED RESIDUE SEQADV 1O1X MSE A 91 UNP Q9X0G9 MET 91 MODIFIED RESIDUE SEQRES 1 A 155 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS VAL SEQRES 2 A 155 LYS ILE ALA ILE ALA SER ASP HIS ALA ALA PHE GLU LEU SEQRES 3 A 155 LYS GLU LYS VAL LYS ASN TYR LEU LEU GLY LYS GLY ILE SEQRES 4 A 155 GLU VAL GLU ASP HIS GLY THR TYR SER GLU GLU SER VAL SEQRES 5 A 155 ASP TYR PRO ASP TYR ALA LYS LYS VAL VAL GLN SER ILE SEQRES 6 A 155 LEU SER ASN GLU ALA ASP PHE GLY ILE LEU LEU OCS GLY SEQRES 7 A 155 THR GLY LEU GLY MSE SER ILE ALA ALA ASN ARG TYR ARG SEQRES 8 A 155 GLY ILE ARG ALA ALA LEU CYS LEU PHE PRO ASP MSE ALA SEQRES 9 A 155 ARG LEU ALA ARG SER HIS ASN ASN ALA ASN ILE LEU VAL SEQRES 10 A 155 LEU PRO GLY ARG LEU ILE GLY ALA GLU LEU ALA PHE TRP SEQRES 11 A 155 ILE VAL ASP THR PHE LEU SER THR PRO PHE ASP GLY GLY SEQRES 12 A 155 ARG HIS GLU ARG ARG ILE ARG LYS ILE ASP GLU VAL MODRES 1O1X OCS A 65 CYS CYSTEINESULFONIC ACID MODRES 1O1X MSE A 71 MET SELENOMETHIONINE MODRES 1O1X MSE A 91 MET SELENOMETHIONINE HET OCS A 65 9 HET MSE A 71 8 HET MSE A 91 8 HET MPD A 301 8 HETNAM OCS CYSTEINESULFONIC ACID HETNAM MSE SELENOMETHIONINE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 1 OCS C3 H7 N O5 S FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 MPD C6 H14 O2 FORMUL 3 HOH *212(H2 O) HELIX 1 1 ALA A 11 LYS A 25 1 15 HELIX 2 2 ASP A 41 SER A 55 1 15 HELIX 3 3 GLY A 68 ASN A 76 1 9 HELIX 4 4 PHE A 88 HIS A 98 1 11 HELIX 5 5 GLY A 112 THR A 126 1 15 HELIX 6 6 ARG A 132 ASP A 141 1 10 SHEET 1 A 5 GLU A 28 ASP A 31 0 SHEET 2 A 5 LYS A 2 SER A 7 1 N ILE A 3 O GLU A 30 SHEET 3 A 5 PHE A 60 OCS A 65 1 O ILE A 62 N ALA A 4 SHEET 4 A 5 ILE A 103 PRO A 107 1 O LEU A 104 N GLY A 61 SHEET 5 A 5 ALA A 83 LEU A 85 1 N ALA A 84 O ILE A 103 LINK C LEU A 64 N OCS A 65 1555 1555 1.33 LINK C OCS A 65 N GLY A 66 1555 1555 1.32 LINK C GLY A 70 N MSE A 71 1555 1555 1.33 LINK C MSE A 71 N SER A 72 1555 1555 1.32 LINK C ASP A 90 N MSE A 91 1555 1555 1.33 LINK C MSE A 91 N ALA A 92 1555 1555 1.34 CISPEP 1 GLY A 33 THR A 34 0 -0.37 SITE 1 AC1 3 LEU A 87 PHE A 88 ILE A 111 CRYST1 61.490 73.890 87.740 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016263 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013534 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011397 0.00000 MASTER 371 0 4 6 5 0 1 6 0 0 0 12 END