HEADER DNA BINDING PROTEIN/TRANSFERASE 19-FEB-03 1NZP TITLE SOLUTION STRUCTURE OF THE LYASE DOMAIN OF HUMAN DNA TITLE 2 POLYMERASE LAMBDA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE LAMBDA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: POLYMERASE LAMBDA LYASE DOMAIN(RESIDUES 242 - COMPND 5 327); COMPND 6 SYNONYM: POL LAMBDA, DNA POLYMERASE LAMBDA, DNA POLYMERASE COMPND 7 BETA-2, POL BETA2; COMPND 8 EC: 2.7.7.7; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BLR (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30A(+) KEYWDS DNA POLYMERASE LAMBDA, POL LAMBDA, LYASE DOMAIN, 8 KDA KEYWDS 2 DOMAIN, POL BETA-LIKE, DNA BINDING PROTEIN/TRANSFERASE KEYWDS 3 COMPLEX EXPDTA SOLUTION NMR NUMMDL 8 MDLTYP MINIMIZED AVERAGE AUTHOR E.F.DEROSE,T.W.KIRBY,G.A.MUELLER,K.BEBENEK,M.GARCIA-DIAZ, AUTHOR 2 L.BLANCO,T.A.KUNKEL,R.E.LONDON REVDAT 2 24-FEB-09 1NZP 1 VERSN REVDAT 1 05-AUG-03 1NZP 0 JRNL AUTH E.F.DEROSE,T.W.KIRBY,G.A.MUELLER,K.BEBENEK, JRNL AUTH 2 M.GARCIA-DIAZ,L.BLANCO,T.A.KUNKEL,R.E.LONDON JRNL TITL SOLUTION STRUCTURE OF THE LYASE DOMAIN OF HUMAN JRNL TITL 2 DNA POLYMERASE LAMBDA JRNL REF BIOCHEMISTRY V. 42 9564 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 12911298 JRNL DOI 10.1021/BI034298S REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.1 REMARK 3 AUTHORS : M. NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE WAS COMPUTED USING REMARK 3 DEFAULT ARIA PARAMETERS. 281 MANUALLY ASSIGNED NOE DISTANCE REMARK 3 RESTRAINTS WERE USED IN ADDITION TO THE NOE RESTRAINTS REMARK 3 AUTOMATICALLY ASSIGNED BY ARIA. ARIA ASSIGNED 790 UNAMBIGUOUS REMARK 3 AND 191 AMBIGUOUS NOE RESTRAINTS. REMARK 4 REMARK 4 1NZP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-FEB-03. REMARK 100 THE RCSB ID CODE IS RCSB018394. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 5MM TRIS, 100MM NACL, 5MM NAN3 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM POL LAMBDA 8 KDA DOMAIN U REMARK 210 -15N,13C; 5MM TRIS-D11; 100MM REMARK 210 NACL; 1MM DTT; 5MM NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 2.1, REMARK 210 NMRVIEW 5.0.4, CNS 1.0, ARIA REMARK 210 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 TORSION ANGLE DYNAMICS FOLLOW REMARK 210 BY CARTESIAN DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 8 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: CHEMICAL SHIFT ASSIGMENTS WERE MADE FROM 3D HNCACB, REMARK 210 CBCA(CO)NH, HNCO, H(CCO)NH, AND (H)C(CO)NH EXPERIMENTS. REMARK 210 AROMATIC RESONANCES WERE ASSIGNED USING 2D (HB)CB(CGCD)HD AND REMARK 210 (HB)CB(CGCDCE)HE EXPERIMENTS. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-8 REMARK 465 RES C SSSEQI REMARK 465 MET A 241 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 244 -119.91 -78.91 REMARK 500 1 SER A 245 89.10 58.61 REMARK 500 1 LYS A 248 -162.26 -129.58 REMARK 500 1 ASN A 251 174.28 -58.70 REMARK 500 1 ASN A 253 -81.89 -99.70 REMARK 500 1 LEU A 254 -2.32 58.56 REMARK 500 1 PRO A 292 -173.87 -66.17 REMARK 500 1 THR A 294 -40.26 -138.75 REMARK 500 1 HIS A 321 -74.62 -146.90 REMARK 500 1 LEU A 322 -72.07 -129.37 REMARK 500 2 SER A 246 10.82 -168.64 REMARK 500 2 ASN A 253 49.32 -157.92 REMARK 500 2 ASP A 272 87.18 -66.36 REMARK 500 2 THR A 294 -32.75 -136.39 REMARK 500 2 GLU A 318 -34.14 71.16 REMARK 500 2 SER A 319 109.25 58.24 REMARK 500 2 HIS A 321 11.83 -144.98 REMARK 500 3 GLN A 243 84.76 56.20 REMARK 500 3 PRO A 244 47.36 -80.00 REMARK 500 3 LYS A 248 77.42 55.02 REMARK 500 3 HIS A 255 2.35 -65.99 REMARK 500 3 THR A 294 -40.65 -131.13 REMARK 500 3 GLU A 318 -106.15 -141.45 REMARK 500 3 SER A 319 94.34 47.31 REMARK 500 3 LEU A 322 84.22 -59.00 REMARK 500 3 ARG A 323 101.52 -55.79 REMARK 500 4 PRO A 244 -175.95 -66.24 REMARK 500 4 SER A 245 -31.48 -168.43 REMARK 500 4 SER A 246 -86.74 60.55 REMARK 500 4 GLN A 247 -162.79 58.80 REMARK 500 4 HIS A 252 -56.16 -131.36 REMARK 500 4 ASN A 253 -68.03 -138.22 REMARK 500 4 LEU A 254 37.25 39.36 REMARK 500 4 ASP A 272 84.38 -157.22 REMARK 500 4 GLU A 318 -82.90 -42.09 REMARK 500 5 GLN A 247 -83.80 62.91 REMARK 500 5 SER A 288 21.11 -153.35 REMARK 500 5 HIS A 290 -66.55 -107.63 REMARK 500 5 PRO A 292 155.25 -48.87 REMARK 500 5 THR A 294 -43.55 -133.13 REMARK 500 5 GLU A 318 -90.09 -68.92 REMARK 500 5 SER A 319 -96.62 50.32 REMARK 500 6 SER A 246 -81.89 -70.95 REMARK 500 6 GLN A 247 -12.86 -167.75 REMARK 500 6 PRO A 292 -173.77 -68.96 REMARK 500 6 GLU A 318 7.57 59.65 REMARK 500 7 SER A 246 -77.12 -130.11 REMARK 500 7 LYS A 248 71.19 -103.60 REMARK 500 7 THR A 250 106.61 -47.05 REMARK 500 7 ASN A 253 19.72 -150.04 REMARK 500 7 HIS A 255 -65.44 -91.57 REMARK 500 7 ASP A 272 92.30 -68.44 REMARK 500 7 LYS A 291 -51.34 136.46 REMARK 500 7 PRO A 292 97.78 -47.54 REMARK 500 7 PRO A 303 5.98 -65.63 REMARK 500 7 GLU A 318 -76.87 -87.02 REMARK 500 7 SER A 319 17.33 57.15 REMARK 500 7 LEU A 322 -63.43 -130.28 REMARK 500 8 PRO A 244 -119.84 -79.02 REMARK 500 8 SER A 245 89.11 58.57 REMARK 500 8 LYS A 248 -162.18 -129.52 REMARK 500 8 ASN A 251 174.28 -58.79 REMARK 500 8 ASN A 253 -81.92 -99.68 REMARK 500 8 LEU A 254 -2.24 58.55 REMARK 500 8 PRO A 292 -173.90 -66.15 REMARK 500 8 THR A 294 -40.42 -138.75 REMARK 500 8 HIS A 321 -74.63 -146.95 REMARK 500 8 LEU A 322 -72.09 -129.34 REMARK 500 REMARK 500 REMARK: NULL DBREF 1NZP A 242 327 UNP Q9UGP5 DPOL_HUMAN 242 327 SEQADV 1NZP MET A 241 UNP Q9UGP5 CLONING ARTIFACT SEQRES 1 A 87 MET ALA GLN PRO SER SER GLN LYS ALA THR ASN HIS ASN SEQRES 2 A 87 LEU HIS ILE THR GLU LYS LEU GLU VAL LEU ALA LYS ALA SEQRES 3 A 87 TYR SER VAL GLN GLY ASP LYS TRP ARG ALA LEU GLY TYR SEQRES 4 A 87 ALA LYS ALA ILE ASN ALA LEU LYS SER PHE HIS LYS PRO SEQRES 5 A 87 VAL THR SER TYR GLN GLU ALA CYS SER ILE PRO GLY ILE SEQRES 6 A 87 GLY LYS ARG MET ALA GLU LYS ILE ILE GLU ILE LEU GLU SEQRES 7 A 87 SER GLY HIS LEU ARG LYS LEU ASP HIS HELIX 1 1 LEU A 254 GLY A 271 1 18 HELIX 2 2 ASP A 272 LYS A 287 1 16 HELIX 3 3 SER A 295 SER A 301 1 7 HELIX 4 4 GLY A 306 GLU A 318 1 13 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 153 0 0 4 0 0 0 6 0 0 0 7 END