HEADER RNA BINDING PROTEIN 11-FEB-03 1NY4 TITLE SOLUTION STRUCTURE OF THE 30S RIBOSOMAL PROTEIN S28E FROM TITLE 2 PYROCOCCUS HORIKOSHII. NORTHEAST STRUCTURAL GENOMICS TITLE 3 CONSORTIUM TARGET JR19. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 30S RIBOSOMAL PROTEIN S28E; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 53953; SOURCE 4 GENE: RPS28E; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21MGK; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS JR19, NMR STRUCTURE, AUTOSTRUCTURE, RIBOSOMAL PROTEIN, KEYWDS 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, PSI, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, NESG, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR J.M.ARAMINI,J.R.CORT,Y.J.HUANG,R.XIAO,T.B.ACTON,C.K.HO,L.- AUTHOR 2 Y.SHIH,M.A.KENNEDY,G.T.MONTELIONE,NORTHEAST STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (NESG) REVDAT 4 24-FEB-09 1NY4 1 VERSN REVDAT 3 25-JAN-05 1NY4 1 AUTHOR KEYWDS REMARK REVDAT 2 09-DEC-03 1NY4 1 JRNL REVDAT 1 02-SEP-03 1NY4 0 JRNL AUTH J.M.ARAMINI,Y.J.HUANG,J.R.CORT, JRNL AUTH 2 S.GOLDSMITH-FISCHMAN,R.XIAO,L.-Y.SHIH,C.K.HO,J.LIU, JRNL AUTH 3 B.ROST,B.HONIG,M.A.KENNEDY,T.B.ACTON,G.T.MONTELIONE JRNL TITL SOLUTION NMR STRUCTURE OF THE 30S RIBOSOMAL JRNL TITL 2 PROTEIN S28E FROM PYROCOCCUS HORIKOSHII. JRNL REF PROTEIN SCI. V. 12 2823 2003 JRNL REFN ISSN 0961-8368 JRNL PMID 14627742 JRNL DOI 10.1110/PS.03359003 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AUTOSTRUCTURE 1.1.2, DYANA 1.5 REMARK 3 AUTHORS : HUANG, MONTELIONE (AUTOSTRUCTURE), GUNTERT REMARK 3 (DYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 828 CONFORMATIONALLY-RESTRICTING NOE-DERIVED DISTANCE REMARK 3 RESTRAINTS, 99 DIHEDRAL ANGLE RESTRAINTS, AND 28 HYDROGEN BOND REMARK 3 RESTRAINTS. (13.5 CONSTRAINTS PER RESIDUE; 5.2 LONG-RANGE REMARK 3 RESTRAINTS PER RESIDUE). STRUCTURE DETERMINATION WAS PERFORMED REMARK 3 ITERATIVELY USING AUTOSTRUCTURE (DYANA). THE UNSTRUCTURED 11 REMARK 3 RESIDUE C-TERMINAL TAG (AAALEHHHHHH) WAS INCLUDED IN THE REMARK 3 STRUCTURE CALCULATIONS BUT IS OMITTED FROM THIS DEPOSITION. REMARK 4 REMARK 4 1NY4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAR-03. REMARK 100 THE RCSB ID CODE IS RCSB018339. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM JR19 U-15N,13C 20 MM REMARK 210 MES, 100 MM NACL, 5 MM CACL2, REMARK 210 10 MM DTT, 0.02% NAN3, PH 6.5; REMARK 210 1.0 MM JR19 U-15N,13C 20 MM REMARK 210 MES, 100 MM NACL, 5 MM CACL2, REMARK 210 10 MM DTT, 0.02% NAN3, PH 6.5; REMARK 210 1.0 MM JR19 U-15N, 5%-13C 20 REMARK 210 MM MES, 100 MM NACL, 5 MM REMARK 210 CACL2, 10 MM DTT, 0.02% NAN3, REMARK 210 PH 6.5 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 15N-NOESY, 3D 13C-NOESY REMARK 210 (ALIPHATIC AND AROMATIC), 4D_ REMARK 210 13C-SEPARATED_NOESY, HNHA, REMARK 210 HIGH RESOLUTION 13C,1H-HSQC, REMARK 210 H/D EXCHANGE, BACKBONE TR REMARK 210 EXPERIMENTS, AND 3D TOCSYS REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 750 MHZ, 600 MHZ, REMARK 210 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA, UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1B, NMRPIPE 2.1, REMARK 210 SPARKY 3.106, AUTOASSIGN 1.9, REMARK 210 HYPER 3.2, PDBSTAT 3.27 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 56 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE REMARK 210 NMR SPECTROSCOPY. AUTOMATIC BACKBONE RESONANCE ASSIGNMENTS REMARK 210 WERE MADE USING AUTOASSIGN. MANUAL SIDE CHAIN ASSIGNMENTS. REMARK 210 AUTOMATIC NOESY ASSIGNMENTS AS WELL AS DISTANCE AND HYDROGEN REMARK 210 BOND RESTRAINTS WERE DETERMINED USING AUTOSTRUCTURE. DIHEDRAL REMARK 210 ANGLE RESTRAINTS WERE DETERMINED USING HYPER AND TALOS. REMARK 210 BACKBONE CONFORMATIONS FOR RESIDUES 1-3, 5-6, 18-20, 22-23, REMARK 210 34-35, 48-49, 57-71, ARE NOT WELL-DEFINED [S(PHI) + S(PSI) < REMARK 210 1.8] IN THIS SOLUTION NMR STRUCTURE. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 ALA A 72 REMARK 465 ALA A 73 REMARK 465 ALA A 74 REMARK 465 LEU A 75 REMARK 465 GLU A 76 REMARK 465 HIS A 77 REMARK 465 HIS A 78 REMARK 465 HIS A 79 REMARK 465 HIS A 80 REMARK 465 HIS A 81 REMARK 465 HIS A 82 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 -56.32 80.69 REMARK 500 1 GLU A 3 116.50 -36.65 REMARK 500 1 ASP A 4 20.53 -151.24 REMARK 500 1 THR A 18 -46.56 -135.26 REMARK 500 1 THR A 20 -75.98 63.73 REMARK 500 1 ARG A 35 -75.32 64.50 REMARK 500 1 LYS A 37 89.08 39.01 REMARK 500 1 PRO A 48 -162.56 -74.96 REMARK 500 1 ASP A 53 150.28 -43.67 REMARK 500 1 GLU A 59 -47.93 -150.84 REMARK 500 1 THR A 60 -3.07 79.96 REMARK 500 1 GLU A 61 -175.40 47.84 REMARK 500 1 ARG A 62 -59.77 -150.19 REMARK 500 1 GLU A 63 79.31 65.14 REMARK 500 1 ALA A 64 58.46 -100.11 REMARK 500 1 GLU A 66 65.24 61.27 REMARK 500 1 ARG A 70 88.01 41.27 REMARK 500 2 ALA A 2 -143.38 -74.45 REMARK 500 2 ASP A 4 19.61 -150.34 REMARK 500 2 ILE A 15 -77.65 -80.41 REMARK 500 2 THR A 20 -76.00 64.25 REMARK 500 2 ARG A 35 -76.02 69.99 REMARK 500 2 LYS A 37 89.87 41.31 REMARK 500 2 PRO A 48 -166.89 -75.00 REMARK 500 2 LEU A 57 114.93 -160.00 REMARK 500 2 GLU A 59 144.43 178.70 REMARK 500 2 THR A 60 -34.10 163.87 REMARK 500 2 ALA A 64 -70.21 -155.69 REMARK 500 2 ARG A 65 -54.15 82.33 REMARK 500 2 LYS A 68 37.19 -171.37 REMARK 500 2 ARG A 70 90.72 39.61 REMARK 500 3 GLU A 3 116.72 -36.80 REMARK 500 3 ILE A 15 -81.47 -94.61 REMARK 500 3 THR A 18 45.36 -166.26 REMARK 500 3 THR A 20 -80.65 67.02 REMARK 500 3 ARG A 35 -47.52 84.33 REMARK 500 3 ASP A 36 30.51 -92.54 REMARK 500 3 LYS A 37 88.57 -51.25 REMARK 500 3 THR A 60 7.99 82.18 REMARK 500 3 ALA A 64 -64.60 -175.91 REMARK 500 3 ARG A 65 -61.68 77.99 REMARK 500 3 GLU A 66 69.94 65.73 REMARK 500 4 GLU A 3 118.24 -36.39 REMARK 500 4 ASP A 4 20.34 -150.97 REMARK 500 4 THR A 18 56.31 -145.83 REMARK 500 4 LYS A 37 88.52 37.53 REMARK 500 4 ILE A 56 -135.69 -96.99 REMARK 500 4 LEU A 57 140.63 87.98 REMARK 500 4 GLU A 59 -29.27 -38.55 REMARK 500 4 THR A 60 49.00 -80.89 REMARK 500 4 ARG A 62 114.60 63.70 REMARK 500 4 GLU A 63 67.57 -162.65 REMARK 500 4 GLU A 66 70.61 77.00 REMARK 500 4 LYS A 68 60.39 -170.98 REMARK 500 5 ASP A 4 20.99 -153.02 REMARK 500 5 THR A 18 -73.97 -145.95 REMARK 500 5 ARG A 35 -73.68 68.19 REMARK 500 5 LYS A 37 88.42 33.30 REMARK 500 5 GLU A 59 -23.67 158.54 REMARK 500 5 ARG A 62 -66.52 83.41 REMARK 500 5 GLU A 66 -62.56 -153.67 REMARK 500 5 ILE A 67 173.28 53.46 REMARK 500 5 LYS A 68 49.37 -170.59 REMARK 500 6 ALA A 2 -71.04 -64.66 REMARK 500 6 GLU A 3 124.32 77.07 REMARK 500 6 ASP A 4 18.10 -146.61 REMARK 500 6 ILE A 15 -81.50 -84.30 REMARK 500 6 LYS A 37 88.32 32.91 REMARK 500 6 VAL A 49 149.69 60.18 REMARK 500 6 GLU A 59 -71.75 -151.87 REMARK 500 6 THR A 60 -47.36 -152.25 REMARK 500 6 GLU A 61 -62.80 72.17 REMARK 500 6 ARG A 62 106.57 -42.96 REMARK 500 6 GLU A 66 61.80 73.57 REMARK 500 6 ILE A 67 -148.65 -88.97 REMARK 500 6 LYS A 68 -37.60 179.78 REMARK 500 6 SER A 69 163.38 65.65 REMARK 500 6 ARG A 70 167.80 66.65 REMARK 500 7 ALA A 2 -158.64 -168.80 REMARK 500 7 ASP A 4 15.55 -140.44 REMARK 500 7 ILE A 15 -74.19 -98.31 REMARK 500 7 THR A 18 57.76 -154.66 REMARK 500 7 THR A 20 -80.77 64.72 REMARK 500 7 LYS A 37 88.42 36.64 REMARK 500 7 ARG A 58 -60.49 69.12 REMARK 500 7 GLU A 61 -175.88 52.67 REMARK 500 7 ARG A 62 -88.77 61.99 REMARK 500 7 ALA A 64 56.44 -153.29 REMARK 500 7 GLU A 66 36.23 84.30 REMARK 500 7 ILE A 67 -148.60 36.69 REMARK 500 7 LYS A 68 -39.55 -175.05 REMARK 500 7 SER A 69 169.23 60.54 REMARK 500 8 ALA A 2 -166.78 -162.18 REMARK 500 8 ASP A 4 20.08 -150.89 REMARK 500 8 LYS A 37 89.36 39.14 REMARK 500 8 ASP A 53 150.64 -40.72 REMARK 500 8 ARG A 58 -66.61 -123.00 REMARK 500 8 GLU A 61 169.20 -47.66 REMARK 500 8 GLU A 63 105.75 -166.66 REMARK 500 8 ALA A 64 102.00 -170.07 REMARK 500 8 GLU A 66 68.86 74.12 REMARK 500 8 LYS A 68 37.41 -170.29 REMARK 500 9 ALA A 2 -98.61 -144.11 REMARK 500 9 GLU A 3 -140.49 -168.45 REMARK 500 9 ASP A 4 20.61 -152.44 REMARK 500 9 ILE A 15 -70.69 -93.48 REMARK 500 9 ARG A 35 -76.80 64.04 REMARK 500 9 LYS A 37 89.34 39.72 REMARK 500 9 VAL A 49 -166.97 -167.65 REMARK 500 9 GLU A 61 -79.88 64.56 REMARK 500 9 ARG A 62 106.24 82.39 REMARK 500 9 ILE A 67 -162.17 41.96 REMARK 500 9 LYS A 68 47.74 -172.75 REMARK 500 9 ARG A 70 142.84 66.50 REMARK 500 10 ALA A 2 -88.07 -89.22 REMARK 500 10 GLU A 3 112.51 -35.25 REMARK 500 10 LYS A 37 88.68 32.95 REMARK 500 10 ARG A 58 -72.26 -72.32 REMARK 500 10 ARG A 62 175.40 62.81 REMARK 500 10 GLU A 63 73.79 38.15 REMARK 500 10 ARG A 65 -0.41 77.18 REMARK 500 10 LYS A 68 -34.42 177.92 REMARK 500 10 SER A 69 -62.89 75.38 REMARK 500 10 ARG A 70 -63.63 -161.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JR19 RELATED DB: TARGETDB DBREF 1NY4 A 1 71 UNP P61030 RS28_PYRHO 1 71 SEQADV 1NY4 ALA A 72 UNP P61030 EXPRESSION TAG SEQADV 1NY4 ALA A 73 UNP P61030 EXPRESSION TAG SEQADV 1NY4 ALA A 74 UNP P61030 EXPRESSION TAG SEQADV 1NY4 LEU A 75 UNP P61030 EXPRESSION TAG SEQADV 1NY4 GLU A 76 UNP P61030 EXPRESSION TAG SEQADV 1NY4 HIS A 77 UNP P61030 EXPRESSION TAG SEQADV 1NY4 HIS A 78 UNP P61030 EXPRESSION TAG SEQADV 1NY4 HIS A 79 UNP P61030 EXPRESSION TAG SEQADV 1NY4 HIS A 80 UNP P61030 EXPRESSION TAG SEQADV 1NY4 HIS A 81 UNP P61030 EXPRESSION TAG SEQADV 1NY4 HIS A 82 UNP P61030 EXPRESSION TAG SEQRES 1 A 82 MET ALA GLU ASP GLU GLY TYR PRO ALA GLU VAL ILE GLU SEQRES 2 A 82 ILE ILE GLY ARG THR GLY THR THR GLY ASP VAL THR GLN SEQRES 3 A 82 VAL LYS VAL ARG ILE LEU GLU GLY ARG ASP LYS GLY ARG SEQRES 4 A 82 VAL ILE ARG ARG ASN VAL ARG GLY PRO VAL ARG VAL GLY SEQRES 5 A 82 ASP ILE LEU ILE LEU ARG GLU THR GLU ARG GLU ALA ARG SEQRES 6 A 82 GLU ILE LYS SER ARG ARG ALA ALA ALA LEU GLU HIS HIS SEQRES 7 A 82 HIS HIS HIS HIS SHEET 1 A 4 VAL A 40 ARG A 46 0 SHEET 2 A 4 VAL A 24 ILE A 31 -1 N VAL A 29 O ILE A 41 SHEET 3 A 4 PRO A 8 ILE A 14 -1 N GLU A 10 O ARG A 30 SHEET 4 A 4 ILE A 54 ILE A 56 -1 O LEU A 55 N ALA A 9 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 240 0 0 0 4 0 0 6 0 0 0 7 END