HEADER UNKNOWN FUNCTION 10-FEB-03 1NXJ TITLE STRUCTURE OF RV3853 FROM MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE S-ADENOSYLMETHIONINE:2- COMPND 3 DEMETHYLMENAQUINONE METHYLTRANSFERASE; COMPND 4 CHAIN: A, B, C; COMPND 5 EC: 2.1.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: MENG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PRI592; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPROEX HTA KEYWDS BETA/BETA/ALPHA DOMAIN, STRUCTURAL GENOMICS, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, TB STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 TBSGC, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR J.M.JOHNSTON,V.L.ARCUS,E.N.BAKER,TB STRUCTURAL GENOMICS AUTHOR 2 CONSORTIUM (TBSGC) REVDAT 3 24-FEB-09 1NXJ 1 VERSN REVDAT 2 01-FEB-05 1NXJ 1 AUTHOR KEYWDS REMARK REVDAT 1 29-JUL-03 1NXJ 0 JRNL AUTH J.M.JOHNSTON,V.L.ARCUS,C.J.MORTON,M.W.PARKER, JRNL AUTH 2 E.N.BAKER JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE METHYLTRANSFERASE JRNL TITL 2 FROM MYCOBACTERIUM TUBERCULOSIS: MISANNOTATION OF JRNL TITL 3 A GENOME CLARIFIED BY PROTEIN STRUCTURAL ANALYSIS JRNL REF J.BACTERIOL. V. 185 4057 2003 JRNL REFN ISSN 0021-9193 JRNL PMID 12837779 JRNL DOI 10.1128/JB.185.14.4057-4065.2003 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 52727 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5344 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4266 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 488 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.011 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3384 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 276 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.66000 REMARK 3 B22 (A**2) : 0.66000 REMARK 3 B33 (A**2) : -1.33000 REMARK 3 B12 (A**2) : -0.39000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.13 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.17 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.70 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.010 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.410 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.750 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.390 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 48.11 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP+LIGANDS4.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNSGLYOXALATE.PAR REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN+LIGANDS4.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : CNSGLYOXALATE.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NXJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-FEB-03. REMARK 100 THE RCSB ID CODE IS RCSB018319. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-01 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.84520 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54241 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.31200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.45M SODIUM POTASSIUM TARTRATE, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.74700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 58.74700 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.74700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER. TRIMERS CAN BE REMARK 300 GENERATED FROM EACH OF THE THREE MONOMERS IN THE ASSYMMETRIC REMARK 300 UNIT BY THE OPERATIONS: -Y, X-Y, Z; Y-X, -X, Z; -X, -Y, Z+1/2; REMARK 300 Y, Y-X, Z+1/2 AND X-Y, X, Z+1/2 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 51.23100 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 88.73469 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -51.23100 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 88.73469 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -26 REMARK 465 SER A -25 REMARK 465 TYR A -24 REMARK 465 TYR A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 ASP A -16 REMARK 465 TYR A -15 REMARK 465 ASP A -14 REMARK 465 ILE A -13 REMARK 465 PRO A -12 REMARK 465 THR A -11 REMARK 465 THR A -10 REMARK 465 GLY A -9 REMARK 465 ASN A -8 REMARK 465 LEU A -7 REMARK 465 TYR A -6 REMARK 465 PHE A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 ALA A -2 REMARK 465 MET A -1 REMARK 465 VAL A 1 REMARK 465 MET B -26 REMARK 465 SER B -25 REMARK 465 TYR B -24 REMARK 465 TYR B -23 REMARK 465 HIS B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 ASP B -16 REMARK 465 TYR B -15 REMARK 465 ASP B -14 REMARK 465 ILE B -13 REMARK 465 PRO B -12 REMARK 465 THR B -11 REMARK 465 THR B -10 REMARK 465 GLY B -9 REMARK 465 ASN B -8 REMARK 465 LEU B -7 REMARK 465 TYR B -6 REMARK 465 PHE B -5 REMARK 465 GLN B -4 REMARK 465 GLY B -3 REMARK 465 ALA B -2 REMARK 465 MET B -1 REMARK 465 VAL B 1 REMARK 465 ALA B 2 REMARK 465 MET C -26 REMARK 465 SER C -25 REMARK 465 TYR C -24 REMARK 465 TYR C -23 REMARK 465 HIS C -22 REMARK 465 HIS C -21 REMARK 465 HIS C -20 REMARK 465 HIS C -19 REMARK 465 HIS C -18 REMARK 465 HIS C -17 REMARK 465 ASP C -16 REMARK 465 TYR C -15 REMARK 465 ASP C -14 REMARK 465 ILE C -13 REMARK 465 PRO C -12 REMARK 465 THR C -11 REMARK 465 THR C -10 REMARK 465 GLY C -9 REMARK 465 ASN C -8 REMARK 465 LEU C -7 REMARK 465 TYR C -6 REMARK 465 PHE C -5 REMARK 465 GLN C -4 REMARK 465 GLY C -3 REMARK 465 ALA C -2 REMARK 465 MET C -1 REMARK 465 VAL C 1 REMARK 465 ALA C 2 REMARK 465 ILE C 3 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 57 CD OE1 NE2 REMARK 480 ARG B 106 CG CD NE CZ NH1 NH2 REMARK 480 GLN C 57 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP C 109 67.01 -68.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLV A 741 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLV B 742 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLV C 743 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLA A 391 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLA B 392 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLA C 393 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RV3853 RELATED DB: TARGETDB DBREF 1NXJ A 1 157 UNP P0A666 RRAA_MYCTU 1 157 DBREF 1NXJ B 1 157 UNP P0A666 RRAA_MYCTU 1 157 DBREF 1NXJ C 1 157 UNP P0A666 RRAA_MYCTU 1 157 SEQADV 1NXJ MET A -26 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ SER A -25 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ TYR A -24 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ TYR A -23 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ HIS A -22 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ HIS A -21 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ HIS A -20 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ HIS A -19 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ HIS A -18 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ HIS A -17 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ ASP A -16 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ TYR A -15 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ ASP A -14 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ ILE A -13 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ PRO A -12 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ THR A -11 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ THR A -10 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ GLY A -9 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ ASN A -8 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ LEU A -7 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ TYR A -6 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ PHE A -5 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ GLN A -4 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ GLY A -3 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ ALA A -2 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ MET A -1 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ VAL A 1 UNP P0A666 MET 1 EXPRESSION TAG SEQADV 1NXJ MET B -26 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ SER B -25 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ TYR B -24 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ TYR B -23 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ HIS B -22 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ HIS B -21 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ HIS B -20 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ HIS B -19 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ HIS B -18 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ HIS B -17 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ ASP B -16 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ TYR B -15 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ ASP B -14 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ ILE B -13 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ PRO B -12 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ THR B -11 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ THR B -10 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ GLY B -9 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ ASN B -8 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ LEU B -7 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ TYR B -6 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ PHE B -5 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ GLN B -4 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ GLY B -3 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ ALA B -2 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ MET B -1 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ VAL B 1 UNP P0A666 MET 1 EXPRESSION TAG SEQADV 1NXJ MET C -26 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ SER C -25 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ TYR C -24 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ TYR C -23 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ HIS C -22 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ HIS C -21 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ HIS C -20 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ HIS C -19 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ HIS C -18 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ HIS C -17 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ ASP C -16 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ TYR C -15 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ ASP C -14 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ ILE C -13 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ PRO C -12 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ THR C -11 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ THR C -10 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ GLY C -9 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ ASN C -8 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ LEU C -7 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ TYR C -6 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ PHE C -5 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ GLN C -4 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ GLY C -3 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ ALA C -2 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ MET C -1 UNP P0A666 EXPRESSION TAG SEQADV 1NXJ VAL C 1 UNP P0A666 MET 1 EXPRESSION TAG SEQRES 1 A 183 MET SER TYR TYR HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 A 183 ILE PRO THR THR GLY ASN LEU TYR PHE GLN GLY ALA MET SEQRES 3 A 183 VAL ALA ILE SER PHE ARG PRO THR ALA ASP LEU VAL ASP SEQRES 4 A 183 ASP ILE GLY PRO ASP VAL ARG SER CYS ASP LEU GLN PHE SEQRES 5 A 183 ARG GLN PHE GLY GLY ARG SER GLN PHE ALA GLY PRO ILE SEQRES 6 A 183 SER THR VAL ARG CYS PHE GLN ASP ASN ALA LEU LEU LYS SEQRES 7 A 183 SER VAL LEU SER GLN PRO SER ALA GLY GLY VAL LEU VAL SEQRES 8 A 183 ILE ASP GLY ALA GLY SER LEU HIS THR ALA LEU VAL GLY SEQRES 9 A 183 ASP VAL ILE ALA GLU LEU ALA ARG SER THR GLY TRP THR SEQRES 10 A 183 GLY LEU ILE VAL HIS GLY ALA VAL ARG ASP ALA ALA ALA SEQRES 11 A 183 LEU ARG GLY ILE ASP ILE GLY ILE LYS ALA LEU GLY THR SEQRES 12 A 183 ASN PRO ARG LYS SER THR LYS THR GLY ALA GLY GLU ARG SEQRES 13 A 183 ASP VAL GLU ILE THR LEU GLY GLY VAL THR PHE VAL PRO SEQRES 14 A 183 GLY ASP ILE ALA TYR SER ASP ASP ASP GLY ILE ILE VAL SEQRES 15 A 183 VAL SEQRES 1 B 183 MET SER TYR TYR HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 B 183 ILE PRO THR THR GLY ASN LEU TYR PHE GLN GLY ALA MET SEQRES 3 B 183 VAL ALA ILE SER PHE ARG PRO THR ALA ASP LEU VAL ASP SEQRES 4 B 183 ASP ILE GLY PRO ASP VAL ARG SER CYS ASP LEU GLN PHE SEQRES 5 B 183 ARG GLN PHE GLY GLY ARG SER GLN PHE ALA GLY PRO ILE SEQRES 6 B 183 SER THR VAL ARG CYS PHE GLN ASP ASN ALA LEU LEU LYS SEQRES 7 B 183 SER VAL LEU SER GLN PRO SER ALA GLY GLY VAL LEU VAL SEQRES 8 B 183 ILE ASP GLY ALA GLY SER LEU HIS THR ALA LEU VAL GLY SEQRES 9 B 183 ASP VAL ILE ALA GLU LEU ALA ARG SER THR GLY TRP THR SEQRES 10 B 183 GLY LEU ILE VAL HIS GLY ALA VAL ARG ASP ALA ALA ALA SEQRES 11 B 183 LEU ARG GLY ILE ASP ILE GLY ILE LYS ALA LEU GLY THR SEQRES 12 B 183 ASN PRO ARG LYS SER THR LYS THR GLY ALA GLY GLU ARG SEQRES 13 B 183 ASP VAL GLU ILE THR LEU GLY GLY VAL THR PHE VAL PRO SEQRES 14 B 183 GLY ASP ILE ALA TYR SER ASP ASP ASP GLY ILE ILE VAL SEQRES 15 B 183 VAL SEQRES 1 C 183 MET SER TYR TYR HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 C 183 ILE PRO THR THR GLY ASN LEU TYR PHE GLN GLY ALA MET SEQRES 3 C 183 VAL ALA ILE SER PHE ARG PRO THR ALA ASP LEU VAL ASP SEQRES 4 C 183 ASP ILE GLY PRO ASP VAL ARG SER CYS ASP LEU GLN PHE SEQRES 5 C 183 ARG GLN PHE GLY GLY ARG SER GLN PHE ALA GLY PRO ILE SEQRES 6 C 183 SER THR VAL ARG CYS PHE GLN ASP ASN ALA LEU LEU LYS SEQRES 7 C 183 SER VAL LEU SER GLN PRO SER ALA GLY GLY VAL LEU VAL SEQRES 8 C 183 ILE ASP GLY ALA GLY SER LEU HIS THR ALA LEU VAL GLY SEQRES 9 C 183 ASP VAL ILE ALA GLU LEU ALA ARG SER THR GLY TRP THR SEQRES 10 C 183 GLY LEU ILE VAL HIS GLY ALA VAL ARG ASP ALA ALA ALA SEQRES 11 C 183 LEU ARG GLY ILE ASP ILE GLY ILE LYS ALA LEU GLY THR SEQRES 12 C 183 ASN PRO ARG LYS SER THR LYS THR GLY ALA GLY GLU ARG SEQRES 13 C 183 ASP VAL GLU ILE THR LEU GLY GLY VAL THR PHE VAL PRO SEQRES 14 C 183 GLY ASP ILE ALA TYR SER ASP ASP ASP GLY ILE ILE VAL SEQRES 15 C 183 VAL HET GLV A 741 5 HET GLV B 742 5 HET GLV C 743 5 HET TLA A 391 10 HET TLA B 392 10 HET TLA C 393 10 HETNAM GLV GLYOXYLIC ACID HETNAM TLA L(+)-TARTARIC ACID HETSYN GLV GLYOXALATE, GLYOXYLATE FORMUL 4 GLV 3(C2 H2 O3) FORMUL 7 TLA 3(C4 H6 O6) FORMUL 10 HOH *276(H2 O) HELIX 1 1 PRO A 7 GLY A 16 1 10 HELIX 2 2 ASN A 48 GLN A 57 1 10 HELIX 3 3 GLY A 78 THR A 88 1 11 HELIX 4 4 ASP A 101 ARG A 106 1 6 HELIX 5 5 PRO B 7 GLY B 16 1 10 HELIX 6 6 ASN B 48 SER B 56 1 9 HELIX 7 7 GLY B 78 THR B 88 1 11 HELIX 8 8 ASP B 101 ARG B 106 1 6 HELIX 9 9 PRO C 7 GLY C 16 1 10 HELIX 10 10 ASN C 48 SER C 56 1 9 HELIX 11 11 GLY C 78 THR C 88 1 11 HELIX 12 12 ASP C 101 ARG C 106 1 6 SHEET 1 A12 ARG A 20 SER A 21 0 SHEET 2 A12 ILE A 154 VAL A 157 -1 N VAL A 156 O ARG A 20 SHEET 3 A12 ILE A 146 SER A 149 -1 N ILE A 146 O VAL A 157 SHEET 4 A12 PHE A 35 ARG A 43 -1 O PHE A 35 N SER A 149 SHEET 5 A12 GLU A 129 ARG A 130 -1 O GLU A 129 N ARG A 43 SHEET 6 A12 PHE A 35 ARG A 43 -1 N ARG A 43 O GLU A 129 SHEET 7 A12 VAL A 63 ASP A 67 1 N VAL A 63 O PRO A 38 SHEET 8 A12 GLY A 92 VAL A 99 1 O GLY A 92 N LEU A 64 SHEET 9 A12 ALA A 75 VAL A 77 1 N LEU A 76 O ALA A 98 SHEET 10 A12 GLY A 92 VAL A 99 1 O ALA A 98 N LEU A 76 SHEET 11 A12 GLY A 111 THR A 117 1 O GLY A 111 N LEU A 93 SHEET 12 A12 ARG A 27 GLN A 28 -1 N ARG A 27 O ALA A 114 SHEET 1 B 2 ILE A 134 LEU A 136 0 SHEET 2 B 2 VAL A 139 PHE A 141 -1 O VAL A 139 N LEU A 136 SHEET 1 C11 ARG B 27 GLN B 28 0 SHEET 2 C11 GLY B 111 THR B 117 -1 O ALA B 114 N ARG B 27 SHEET 3 C11 GLY B 92 VAL B 99 1 O LEU B 93 N LYS B 113 SHEET 4 C11 ALA B 75 VAL B 77 1 N LEU B 76 O ALA B 98 SHEET 5 C11 GLY B 92 VAL B 99 1 O ALA B 98 N LEU B 76 SHEET 6 C11 VAL B 63 ASP B 67 1 O LEU B 64 N ILE B 94 SHEET 7 C11 PHE B 35 ARG B 43 1 O PRO B 38 N VAL B 63 SHEET 8 C11 GLU B 129 ARG B 130 -1 O GLU B 129 N ARG B 43 SHEET 9 C11 PHE B 35 ARG B 43 -1 N ARG B 43 O GLU B 129 SHEET 10 C11 ILE B 146 SER B 149 -1 N ALA B 147 O GLY B 37 SHEET 11 C11 ILE B 154 VAL B 156 -1 O ILE B 155 N TYR B 148 SHEET 1 D 2 ILE B 134 LEU B 136 0 SHEET 2 D 2 VAL B 139 PHE B 141 -1 O VAL B 139 N LEU B 136 SHEET 1 E12 ARG C 20 SER C 21 0 SHEET 2 E12 ILE C 154 VAL C 157 -1 N VAL C 156 O ARG C 20 SHEET 3 E12 ILE C 146 SER C 149 -1 N ILE C 146 O VAL C 157 SHEET 4 E12 PHE C 35 ARG C 43 -1 O PHE C 35 N SER C 149 SHEET 5 E12 GLU C 129 ARG C 130 -1 O GLU C 129 N ARG C 43 SHEET 6 E12 PHE C 35 ARG C 43 -1 N ARG C 43 O GLU C 129 SHEET 7 E12 VAL C 63 ASP C 67 1 N VAL C 63 O PRO C 38 SHEET 8 E12 GLY C 92 VAL C 99 1 O GLY C 92 N LEU C 64 SHEET 9 E12 ALA C 75 VAL C 77 1 N LEU C 76 O ALA C 98 SHEET 10 E12 GLY C 92 VAL C 99 1 O ALA C 98 N LEU C 76 SHEET 11 E12 GLY C 111 THR C 117 1 O GLY C 111 N LEU C 93 SHEET 12 E12 ARG C 27 GLN C 28 -1 N ARG C 27 O ALA C 114 SHEET 1 F 2 ILE C 134 LEU C 136 0 SHEET 2 F 2 VAL C 139 PHE C 141 -1 O VAL C 139 N LEU C 136 SITE 1 AC1 7 GLN A 25 PHE A 26 ARG A 27 THR A 117 SITE 2 AC1 7 ASP A 151 HOH A 751 HOH A 802 SITE 1 AC2 7 LEU B 24 GLN B 25 PHE B 26 ARG B 27 SITE 2 AC2 7 THR B 117 ASP B 151 HOH B 755 SITE 1 AC3 7 GLN C 25 PHE C 26 ARG C 27 THR C 117 SITE 2 AC3 7 ASP C 151 HOH C 759 HOH C 771 SITE 1 AC4 11 ASN A 48 ALA A 75 GLY A 78 ASP A 79 SITE 2 AC4 11 VAL A 80 ILE A 81 ARG A 100 LYS A 121 SITE 3 AC4 11 SER A 122 LYS A 124 HOH A 777 SITE 1 AC5 11 ASN B 48 ALA B 75 GLY B 78 ASP B 79 SITE 2 AC5 11 VAL B 80 ILE B 81 ARG B 100 LYS B 121 SITE 3 AC5 11 SER B 122 LYS B 124 HOH B 777 SITE 1 AC6 11 ASN C 48 ALA C 75 GLY C 78 ASP C 79 SITE 2 AC6 11 VAL C 80 ILE C 81 ARG C 100 LYS C 121 SITE 3 AC6 11 SER C 122 LYS C 124 HOH C 821 CRYST1 102.462 102.462 117.494 90.00 90.00 120.00 P 63 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009760 0.005635 0.000000 0.00000 SCALE2 0.000000 0.011270 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008511 0.00000 MASTER 401 0 6 12 41 0 15 6 0 0 0 45 END