HEADER ELECTRON TRANSPORT 10-FEB-03 1NX7 TITLE SOLUTION STRUCTURE OF OXIDIZED BOVINE MICROSOMAL CYTOCHROME TITLE 2 B5 CAVEAT 1NX7 CHIRALITY ERROR AT THE CA CENTER OF ALA A 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME B5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 3-84; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM83; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PUC19 KEYWDS FIVE HELIX, FIVE SHEET, HEME RING, ELECTRON TRANSPORT EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR H.WU,Q.ZANG REVDAT 3 24-FEB-09 1NX7 1 VERSN REVDAT 2 01-FEB-05 1NX7 1 JRNL REVDAT 1 15-JUN-04 1NX7 0 JRNL AUTH Q.ZHANG,C.CAO,Z.Q.WANG,Y.H.WANG,H.WU,Z.X.HUANG JRNL TITL THE COMPARATIVE STUDY ON THE SOLUTION STRUCTURES JRNL TITL 2 OF THE OXIDIZED BOVINE MICROSOMAL CYTOCHROME B5 JRNL TITL 3 AND MUTANT V45H JRNL REF PROTEIN SCI. V. 13 2161 2004 JRNL REFN ISSN 0961-8368 JRNL PMID 15273310 JRNL DOI 10.1110/PS.04721104 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 6.0 REMARK 3 AUTHORS : PETER KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE ARE BASED ON A TOTAL REMARK 3 OF 1698 RESTRAINS, 1489 ARE NOE-DERIVED DISTANCE CONSTRAINTS REMARK 3 AND 209 PSEUDOCONTACT SHIFT CONSTRAINTS REMARK 4 REMARK 4 1NX7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-FEB-03. REMARK 100 THE RCSB ID CODE IS RCSB018308. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300; 298 REMARK 210 PH : 7.00; 7.00 REMARK 210 IONIC STRENGTH : 25MM PHOSPHATE BUFFER; 25MM REMARK 210 PHOSPHATE BUFFER REMARK 210 PRESSURE : 1ATM; 1ATM REMARK 210 SAMPLE CONTENTS : 3.0MM; 3.0MM REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TOCSY, DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA 1.5, VNMR 6.1B, XEASY REMARK 210 1994 REMARK 210 METHOD USED : DISTANCE GEOMITRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-30 REMARK 470 RES CSSEQI ATOMS REMARK 470 ARG A 84 C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ASN A 16 N - CA - CB ANGL. DEV. = -13.2 DEGREES REMARK 500 1 ARG A 84 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 1 ARG A 84 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 3 ASN A 16 N - CA - CB ANGL. DEV. = -11.5 DEGREES REMARK 500 4 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 5 ASN A 16 N - CA - CB ANGL. DEV. = -11.2 DEGREES REMARK 500 5 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 6 TYR A 27 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 9 ASN A 16 N - CA - CB ANGL. DEV. = -11.4 DEGREES REMARK 500 10 ASN A 16 N - CA - CB ANGL. DEV. = -11.2 DEGREES REMARK 500 10 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 12 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 13 ASN A 16 N - CA - CB ANGL. DEV. = -11.5 DEGREES REMARK 500 14 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 16 LEU A 25 CB - CG - CD2 ANGL. DEV. = 11.2 DEGREES REMARK 500 17 ASN A 16 N - CA - CB ANGL. DEV. = -11.9 DEGREES REMARK 500 18 ASN A 16 N - CA - CB ANGL. DEV. = -11.5 DEGREES REMARK 500 19 ASN A 16 N - CA - CB ANGL. DEV. = -11.8 DEGREES REMARK 500 20 LEU A 25 CB - CG - CD1 ANGL. DEV. = 10.2 DEGREES REMARK 500 20 ARG A 84 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 21 LEU A 25 CB - CG - CD1 ANGL. DEV. = 10.8 DEGREES REMARK 500 21 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 21 ARG A 68 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 23 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 24 ASN A 16 N - CA - CB ANGL. DEV. = -11.5 DEGREES REMARK 500 25 ASN A 16 N - CA - CB ANGL. DEV. = -11.0 DEGREES REMARK 500 26 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 28 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 29 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 30 ASN A 16 N - CA - CB ANGL. DEV. = -11.5 DEGREES REMARK 500 30 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 20 94.72 -40.54 REMARK 500 1 HIS A 26 69.61 63.50 REMARK 500 1 TYR A 27 -27.24 68.11 REMARK 500 1 LEU A 36 -55.58 -28.47 REMARK 500 1 GLU A 56 -75.10 -37.03 REMARK 500 1 HIS A 63 -110.66 64.09 REMARK 500 1 PRO A 81 -9.28 -58.22 REMARK 500 2 HIS A 15 69.45 -110.36 REMARK 500 2 ASN A 16 7.98 -162.50 REMARK 500 2 SER A 18 -65.58 -171.16 REMARK 500 2 HIS A 26 76.32 60.11 REMARK 500 2 TYR A 27 -38.80 75.99 REMARK 500 2 HIS A 80 131.33 -37.72 REMARK 500 2 PRO A 81 1.67 -64.27 REMARK 500 3 ASN A 16 11.19 -162.46 REMARK 500 3 SER A 18 -63.48 -173.19 REMARK 500 3 SER A 20 106.62 -52.24 REMARK 500 3 HIS A 26 78.76 60.64 REMARK 500 3 TYR A 27 24.48 48.31 REMARK 500 3 HIS A 63 -83.91 -147.29 REMARK 500 3 HIS A 80 134.23 -36.46 REMARK 500 3 PRO A 81 -5.50 -56.51 REMARK 500 4 HIS A 15 70.74 -109.05 REMARK 500 4 ASN A 16 30.96 -159.09 REMARK 500 4 SER A 18 -74.06 55.22 REMARK 500 4 SER A 20 100.05 -43.70 REMARK 500 4 TYR A 27 -26.87 67.42 REMARK 500 4 GLU A 56 -72.51 -37.79 REMARK 500 4 HIS A 63 130.62 -35.86 REMARK 500 4 HIS A 80 138.05 -39.01 REMARK 500 5 ASN A 16 25.99 -152.80 REMARK 500 5 LYS A 19 -71.63 168.59 REMARK 500 5 HIS A 26 72.72 60.04 REMARK 500 5 TYR A 27 -31.42 74.30 REMARK 500 5 VAL A 61 44.28 -88.13 REMARK 500 5 PRO A 81 2.34 -63.50 REMARK 500 6 HIS A 15 77.63 -100.60 REMARK 500 6 ASN A 16 21.70 -155.13 REMARK 500 6 LYS A 19 -52.67 -129.84 REMARK 500 6 TYR A 27 -24.86 67.33 REMARK 500 6 ASP A 31 57.28 -94.46 REMARK 500 6 LEU A 32 9.41 -68.67 REMARK 500 6 GLU A 56 -72.08 -36.62 REMARK 500 6 HIS A 80 130.79 -37.58 REMARK 500 7 HIS A 15 59.18 -100.56 REMARK 500 7 ASN A 17 -104.39 -148.33 REMARK 500 7 SER A 18 -72.26 -65.73 REMARK 500 7 SER A 20 108.51 -40.67 REMARK 500 7 HIS A 26 62.11 73.50 REMARK 500 7 TYR A 27 -25.30 66.22 REMARK 500 7 LEU A 32 8.31 -69.59 REMARK 500 7 ASP A 60 -70.44 -24.61 REMARK 500 7 PRO A 81 -8.81 -59.07 REMARK 500 8 ASN A 16 30.34 -142.88 REMARK 500 8 SER A 20 95.43 -160.11 REMARK 500 8 HIS A 26 76.68 56.88 REMARK 500 8 TYR A 27 -28.57 61.92 REMARK 500 8 LEU A 32 53.66 -103.74 REMARK 500 8 HIS A 80 133.76 -36.22 REMARK 500 8 PRO A 81 2.23 -62.38 REMARK 500 9 ASN A 16 19.15 -146.27 REMARK 500 9 SER A 20 122.33 -176.65 REMARK 500 9 HIS A 26 70.41 61.54 REMARK 500 9 TYR A 27 -32.64 74.85 REMARK 500 9 GLU A 56 -72.36 -37.19 REMARK 500 9 PRO A 81 -6.37 -59.66 REMARK 500 10 ASN A 16 27.80 -161.87 REMARK 500 10 SER A 18 -67.59 60.30 REMARK 500 10 SER A 20 101.00 -47.81 REMARK 500 10 HIS A 26 76.77 56.15 REMARK 500 10 TYR A 27 -28.73 66.52 REMARK 500 10 THR A 33 -50.63 -25.24 REMARK 500 10 LEU A 36 -59.45 -22.19 REMARK 500 10 VAL A 61 51.54 -100.92 REMARK 500 10 HIS A 63 -74.53 -38.93 REMARK 500 10 PRO A 81 -8.34 -59.36 REMARK 500 11 ASN A 16 4.52 -165.10 REMARK 500 11 SER A 18 -56.78 -165.63 REMARK 500 11 TYR A 27 -28.62 68.35 REMARK 500 11 ASP A 31 51.42 -93.14 REMARK 500 11 LEU A 32 9.09 -68.72 REMARK 500 11 LEU A 79 107.53 -58.08 REMARK 500 11 HIS A 80 136.58 -32.09 REMARK 500 12 HIS A 15 56.77 -112.04 REMARK 500 12 ASN A 17 -64.51 -128.67 REMARK 500 12 SER A 18 -46.39 -164.25 REMARK 500 12 LYS A 19 -61.18 -94.42 REMARK 500 12 SER A 20 104.47 -53.29 REMARK 500 12 TYR A 27 -26.52 66.34 REMARK 500 12 LEU A 32 9.02 -68.64 REMARK 500 12 LEU A 36 -58.98 -25.79 REMARK 500 12 HIS A 63 128.46 73.09 REMARK 500 12 HIS A 80 133.38 -38.56 REMARK 500 12 PRO A 81 -7.29 -57.50 REMARK 500 13 ASN A 16 31.47 -159.79 REMARK 500 13 ASN A 17 -169.98 -108.56 REMARK 500 13 SER A 18 73.80 -68.54 REMARK 500 13 LYS A 19 -59.48 132.74 REMARK 500 13 SER A 20 99.58 -49.65 REMARK 500 13 HIS A 26 75.54 59.83 REMARK 500 13 TYR A 27 -35.07 74.80 REMARK 500 13 LEU A 32 48.39 -81.78 REMARK 500 13 LEU A 36 -54.81 -29.97 REMARK 500 13 GLU A 56 -72.51 -33.59 REMARK 500 13 VAL A 61 38.39 -91.65 REMARK 500 14 ASN A 16 30.57 -155.77 REMARK 500 14 LYS A 19 -64.17 -95.08 REMARK 500 14 HIS A 26 72.90 59.13 REMARK 500 14 TYR A 27 -33.92 75.47 REMARK 500 15 ASN A 16 41.45 -156.35 REMARK 500 15 ASN A 17 -78.62 -76.24 REMARK 500 15 SER A 18 -80.00 -110.81 REMARK 500 15 THR A 21 110.68 -162.61 REMARK 500 15 HIS A 26 74.08 54.45 REMARK 500 15 TYR A 27 -36.92 75.65 REMARK 500 15 LEU A 32 10.12 -69.20 REMARK 500 15 LEU A 36 -56.16 -29.43 REMARK 500 15 PRO A 81 18.65 -67.87 REMARK 500 16 ASN A 16 30.49 -143.40 REMARK 500 16 TYR A 27 -29.61 67.50 REMARK 500 16 ASP A 31 58.37 -102.99 REMARK 500 16 HIS A 63 138.92 67.47 REMARK 500 17 ASN A 16 28.28 -159.69 REMARK 500 17 LYS A 19 -55.33 -124.34 REMARK 500 17 SER A 20 102.46 -40.55 REMARK 500 17 HIS A 26 65.94 69.76 REMARK 500 17 TYR A 27 -33.81 75.78 REMARK 500 17 THR A 33 -48.15 -27.51 REMARK 500 17 GLU A 56 -73.77 -35.70 REMARK 500 17 SER A 64 153.19 -45.11 REMARK 500 17 PRO A 81 4.87 -62.53 REMARK 500 18 ASN A 16 29.50 -159.37 REMARK 500 18 ASN A 17 -146.32 -86.03 REMARK 500 18 SER A 20 104.39 -44.08 REMARK 500 18 HIS A 26 78.97 46.87 REMARK 500 18 TYR A 27 -38.64 77.59 REMARK 500 19 ASN A 16 17.11 -145.08 REMARK 500 19 SER A 20 109.17 -178.88 REMARK 500 19 TYR A 27 -24.26 67.73 REMARK 500 19 LEU A 32 14.06 -69.68 REMARK 500 19 GLU A 56 -72.39 -35.52 REMARK 500 19 VAL A 61 44.33 -86.60 REMARK 500 19 SER A 71 -39.58 -37.07 REMARK 500 19 HIS A 80 135.55 -34.71 REMARK 500 20 TYR A 27 -26.11 71.20 REMARK 500 20 LEU A 32 41.66 -83.20 REMARK 500 20 GLU A 56 -73.92 -37.03 REMARK 500 20 HIS A 80 132.27 -36.25 REMARK 500 20 PRO A 81 11.78 -58.29 REMARK 500 20 ASP A 82 -34.87 -136.86 REMARK 500 21 HIS A 15 74.84 -112.88 REMARK 500 21 ASN A 16 15.95 -162.21 REMARK 500 21 SER A 18 -59.90 66.80 REMARK 500 21 LYS A 19 -41.06 -153.88 REMARK 500 21 SER A 20 116.63 -38.22 REMARK 500 21 TYR A 27 -25.91 67.93 REMARK 500 21 HIS A 63 158.31 70.41 REMARK 500 21 HIS A 80 137.20 -39.54 REMARK 500 21 PRO A 81 -6.16 -58.40 REMARK 500 22 TYR A 27 11.47 54.17 REMARK 500 22 LEU A 32 49.77 -107.29 REMARK 500 22 HIS A 63 156.30 67.93 REMARK 500 22 HIS A 80 135.43 -39.67 REMARK 500 23 HIS A 15 60.09 -109.50 REMARK 500 23 ASN A 16 89.97 -156.28 REMARK 500 23 ASN A 17 -99.04 -149.21 REMARK 500 23 SER A 18 -80.56 -73.71 REMARK 500 23 HIS A 26 66.20 72.76 REMARK 500 23 TYR A 27 -29.46 66.25 REMARK 500 23 LEU A 32 8.89 -69.28 REMARK 500 23 LEU A 36 -58.29 -27.02 REMARK 500 23 GLU A 56 -73.22 -33.70 REMARK 500 23 VAL A 61 49.14 -102.04 REMARK 500 23 HIS A 80 137.63 -36.09 REMARK 500 23 PRO A 81 -7.58 -59.74 REMARK 500 24 ASN A 16 28.85 -159.02 REMARK 500 24 LYS A 19 -71.43 -84.24 REMARK 500 24 HIS A 26 68.10 69.93 REMARK 500 24 TYR A 27 -35.69 74.30 REMARK 500 24 LYS A 34 31.23 -98.67 REMARK 500 24 LEU A 36 -57.80 -28.37 REMARK 500 24 HIS A 63 141.58 72.23 REMARK 500 24 HIS A 80 129.40 -34.41 REMARK 500 24 PRO A 81 9.20 -65.23 REMARK 500 25 ASN A 16 39.92 -146.48 REMARK 500 25 LYS A 19 -40.61 167.63 REMARK 500 25 HIS A 26 69.61 71.74 REMARK 500 25 TYR A 27 -29.56 72.73 REMARK 500 25 HIS A 63 131.03 68.09 REMARK 500 26 TYR A 6 107.80 -59.80 REMARK 500 26 ASN A 16 -16.15 -140.67 REMARK 500 26 SER A 18 71.13 -61.58 REMARK 500 26 LYS A 19 -43.82 175.17 REMARK 500 26 HIS A 26 70.40 60.17 REMARK 500 26 TYR A 27 -32.82 74.98 REMARK 500 26 LEU A 32 52.52 -106.20 REMARK 500 26 PRO A 81 0.89 -63.24 REMARK 500 27 ASN A 16 -27.05 -146.00 REMARK 500 27 SER A 18 70.64 -60.68 REMARK 500 27 LYS A 19 -47.70 177.48 REMARK 500 27 HIS A 26 70.13 65.08 REMARK 500 27 TYR A 27 -23.68 64.01 REMARK 500 27 LEU A 32 46.15 -105.43 REMARK 500 27 HIS A 63 -86.08 -10.52 REMARK 500 27 HIS A 80 134.12 -39.86 REMARK 500 28 ASN A 16 44.00 -144.18 REMARK 500 28 SER A 20 92.10 -162.90 REMARK 500 28 HIS A 26 68.79 63.09 REMARK 500 28 TYR A 27 -28.37 67.34 REMARK 500 28 LEU A 32 43.15 -103.99 REMARK 500 28 GLU A 56 -73.54 -36.42 REMARK 500 28 PRO A 81 7.81 -66.32 REMARK 500 29 HIS A 15 57.44 -100.15 REMARK 500 29 SER A 18 -104.45 -164.31 REMARK 500 29 SER A 20 96.98 -60.27 REMARK 500 29 HIS A 26 70.70 73.17 REMARK 500 29 TYR A 27 -33.46 75.73 REMARK 500 29 LEU A 36 -57.50 -29.49 REMARK 500 29 VAL A 61 44.90 -97.26 REMARK 500 29 PRO A 81 4.99 -60.86 REMARK 500 30 ASN A 16 20.82 -155.14 REMARK 500 30 LYS A 19 -64.25 -92.49 REMARK 500 30 HIS A 26 61.69 80.08 REMARK 500 30 TYR A 27 -28.98 65.50 REMARK 500 30 GLU A 56 -71.02 -36.57 REMARK 500 30 PRO A 81 -9.02 -58.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 7 0.12 SIDE_CHAIN REMARK 500 1 ARG A 84 0.13 SIDE_CHAIN REMARK 500 2 TYR A 6 0.13 SIDE_CHAIN REMARK 500 2 TYR A 7 0.07 SIDE_CHAIN REMARK 500 2 TYR A 27 0.11 SIDE_CHAIN REMARK 500 2 ARG A 47 0.11 SIDE_CHAIN REMARK 500 3 TYR A 6 0.17 SIDE_CHAIN REMARK 500 3 TYR A 7 0.09 SIDE_CHAIN REMARK 500 3 TYR A 30 0.09 SIDE_CHAIN REMARK 500 3 PHE A 58 0.10 SIDE_CHAIN REMARK 500 4 TYR A 7 0.10 SIDE_CHAIN REMARK 500 4 TYR A 27 0.11 SIDE_CHAIN REMARK 500 4 PHE A 58 0.13 SIDE_CHAIN REMARK 500 4 ARG A 68 0.08 SIDE_CHAIN REMARK 500 4 ARG A 84 0.11 SIDE_CHAIN REMARK 500 5 TYR A 7 0.12 SIDE_CHAIN REMARK 500 5 TYR A 27 0.09 SIDE_CHAIN REMARK 500 5 PHE A 58 0.14 SIDE_CHAIN REMARK 500 5 ARG A 68 0.09 SIDE_CHAIN REMARK 500 6 TYR A 7 0.09 SIDE_CHAIN REMARK 500 6 TYR A 30 0.13 SIDE_CHAIN REMARK 500 7 TYR A 7 0.09 SIDE_CHAIN REMARK 500 7 TYR A 27 0.14 SIDE_CHAIN REMARK 500 7 TYR A 30 0.09 SIDE_CHAIN REMARK 500 7 ARG A 47 0.13 SIDE_CHAIN REMARK 500 7 PHE A 58 0.15 SIDE_CHAIN REMARK 500 8 TYR A 7 0.10 SIDE_CHAIN REMARK 500 8 TYR A 30 0.10 SIDE_CHAIN REMARK 500 8 PHE A 58 0.08 SIDE_CHAIN REMARK 500 8 ARG A 84 0.08 SIDE_CHAIN REMARK 500 9 TYR A 7 0.09 SIDE_CHAIN REMARK 500 9 TYR A 27 0.08 SIDE_CHAIN REMARK 500 9 TYR A 30 0.09 SIDE_CHAIN REMARK 500 9 PHE A 58 0.11 SIDE_CHAIN REMARK 500 10 TYR A 6 0.14 SIDE_CHAIN REMARK 500 10 TYR A 7 0.09 SIDE_CHAIN REMARK 500 10 TYR A 27 0.12 SIDE_CHAIN REMARK 500 10 ARG A 68 0.11 SIDE_CHAIN REMARK 500 10 ARG A 84 0.14 SIDE_CHAIN REMARK 500 11 TYR A 7 0.09 SIDE_CHAIN REMARK 500 11 TYR A 30 0.13 SIDE_CHAIN REMARK 500 11 PHE A 58 0.14 SIDE_CHAIN REMARK 500 12 TYR A 6 0.11 SIDE_CHAIN REMARK 500 12 TYR A 7 0.10 SIDE_CHAIN REMARK 500 12 TYR A 27 0.08 SIDE_CHAIN REMARK 500 12 PHE A 58 0.10 SIDE_CHAIN REMARK 500 12 ARG A 84 0.10 SIDE_CHAIN REMARK 500 13 TYR A 6 0.15 SIDE_CHAIN REMARK 500 13 TYR A 7 0.10 SIDE_CHAIN REMARK 500 13 TYR A 27 0.09 SIDE_CHAIN REMARK 500 13 PHE A 58 0.17 SIDE_CHAIN REMARK 500 13 ARG A 68 0.09 SIDE_CHAIN REMARK 500 14 TYR A 27 0.08 SIDE_CHAIN REMARK 500 14 ARG A 47 0.08 SIDE_CHAIN REMARK 500 15 TYR A 6 0.15 SIDE_CHAIN REMARK 500 15 TYR A 7 0.10 SIDE_CHAIN REMARK 500 15 TYR A 27 0.11 SIDE_CHAIN REMARK 500 15 PHE A 58 0.12 SIDE_CHAIN REMARK 500 16 TYR A 27 0.08 SIDE_CHAIN REMARK 500 17 TYR A 7 0.10 SIDE_CHAIN REMARK 500 17 TYR A 27 0.10 SIDE_CHAIN REMARK 500 17 PHE A 58 0.12 SIDE_CHAIN REMARK 500 18 TYR A 7 0.07 SIDE_CHAIN REMARK 500 18 TYR A 27 0.10 SIDE_CHAIN REMARK 500 18 TYR A 30 0.12 SIDE_CHAIN REMARK 500 18 ARG A 84 0.08 SIDE_CHAIN REMARK 500 19 TYR A 7 0.08 SIDE_CHAIN REMARK 500 19 TYR A 27 0.10 SIDE_CHAIN REMARK 500 19 TYR A 30 0.15 SIDE_CHAIN REMARK 500 19 PHE A 58 0.21 SIDE_CHAIN REMARK 500 19 ARG A 68 0.08 SIDE_CHAIN REMARK 500 19 ARG A 84 0.08 SIDE_CHAIN REMARK 500 20 TYR A 6 0.14 SIDE_CHAIN REMARK 500 20 TYR A 27 0.11 SIDE_CHAIN REMARK 500 20 PHE A 58 0.10 SIDE_CHAIN REMARK 500 20 ARG A 84 0.11 SIDE_CHAIN REMARK 500 21 TYR A 7 0.10 SIDE_CHAIN REMARK 500 21 ARG A 84 0.15 SIDE_CHAIN REMARK 500 22 TYR A 27 0.10 SIDE_CHAIN REMARK 500 22 PHE A 58 0.17 SIDE_CHAIN REMARK 500 23 TYR A 6 0.11 SIDE_CHAIN REMARK 500 23 TYR A 7 0.10 SIDE_CHAIN REMARK 500 23 TYR A 27 0.13 SIDE_CHAIN REMARK 500 23 TYR A 30 0.10 SIDE_CHAIN REMARK 500 23 ARG A 47 0.12 SIDE_CHAIN REMARK 500 23 PHE A 58 0.17 SIDE_CHAIN REMARK 500 24 TYR A 6 0.12 SIDE_CHAIN REMARK 500 24 TYR A 7 0.09 SIDE_CHAIN REMARK 500 24 TYR A 27 0.14 SIDE_CHAIN REMARK 500 24 PHE A 58 0.11 SIDE_CHAIN REMARK 500 25 TYR A 7 0.09 SIDE_CHAIN REMARK 500 25 TYR A 27 0.09 SIDE_CHAIN REMARK 500 25 TYR A 30 0.09 SIDE_CHAIN REMARK 500 25 PHE A 58 0.13 SIDE_CHAIN REMARK 500 25 ARG A 68 0.08 SIDE_CHAIN REMARK 500 26 TYR A 7 0.09 SIDE_CHAIN REMARK 500 26 TYR A 27 0.08 SIDE_CHAIN REMARK 500 27 TYR A 27 0.10 SIDE_CHAIN REMARK 500 27 TYR A 30 0.08 SIDE_CHAIN REMARK 500 27 PHE A 58 0.15 SIDE_CHAIN REMARK 500 27 ARG A 84 0.08 SIDE_CHAIN REMARK 500 28 TYR A 7 0.17 SIDE_CHAIN REMARK 500 28 TYR A 30 0.08 SIDE_CHAIN REMARK 500 28 PHE A 58 0.15 SIDE_CHAIN REMARK 500 29 TYR A 7 0.10 SIDE_CHAIN REMARK 500 29 TYR A 27 0.09 SIDE_CHAIN REMARK 500 29 PHE A 58 0.08 SIDE_CHAIN REMARK 500 30 TYR A 6 0.11 SIDE_CHAIN REMARK 500 30 TYR A 7 0.10 SIDE_CHAIN REMARK 500 30 TYR A 27 0.16 SIDE_CHAIN REMARK 500 30 TYR A 30 0.08 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (11X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 5 ALA A 3 124.2 ALPHA-CARBON REMARK 500 8 ALA A 3 124.2 ALPHA-CARBON REMARK 500 14 ALA A 3 124.1 ALPHA-CARBON REMARK 500 15 ALA A 3 124.0 ALPHA-CARBON REMARK 500 18 ALA A 3 125.2 ALPHA-CARBON REMARK 500 19 ALA A 3 124.3 ALPHA-CARBON REMARK 500 20 ALA A 3 124.4 ALPHA-CARBON REMARK 500 26 ALA A 3 124.7 ALPHA-CARBON REMARK 500 27 ALA A 3 123.9 ALPHA-CARBON REMARK 500 29 ALA A 3 123.9 ALPHA-CARBON REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 HEM A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 39 NE2 REMARK 620 2 HIS A 63 NE2 176.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 201 DBREF 1NX7 A 3 84 UNP P00171 CYB5_BOVIN 7 88 SEQRES 1 A 82 ALA VAL LYS TYR TYR THR LEU GLU GLU ILE GLN LYS HIS SEQRES 2 A 82 ASN ASN SER LYS SER THR TRP LEU ILE LEU HIS TYR LYS SEQRES 3 A 82 VAL TYR ASP LEU THR LYS PHE LEU GLU GLU HIS PRO GLY SEQRES 4 A 82 GLY GLU GLU VAL LEU ARG GLU GLN ALA GLY GLY ASP ALA SEQRES 5 A 82 THR GLU ASN PHE GLU ASP VAL GLY HIS SER THR ASP ALA SEQRES 6 A 82 ARG GLU LEU SER LYS THR PHE ILE ILE GLY GLU LEU HIS SEQRES 7 A 82 PRO ASP ASP ARG HET HEM A 201 73 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 HELIX 1 1 THR A 8 LYS A 14 1 7 HELIX 2 2 LYS A 34 HIS A 39 1 6 HELIX 3 3 GLU A 43 GLN A 49 1 7 HELIX 4 4 ALA A 54 GLY A 62 1 9 HELIX 5 5 SER A 64 LYS A 72 1 9 SHEET 1 A 5 LYS A 5 TYR A 7 0 SHEET 2 A 5 ILE A 75 LEU A 79 1 O GLU A 78 N TYR A 7 SHEET 3 A 5 LYS A 28 TYR A 30 -1 N VAL A 29 O ILE A 76 SHEET 4 A 5 LEU A 23 LEU A 25 -1 N LEU A 23 O TYR A 30 SHEET 5 A 5 GLY A 52 ASP A 53 1 O GLY A 52 N ILE A 24 LINK FE HEM A 201 NE2 HIS A 39 1555 1555 1.99 LINK FE HEM A 201 NE2 HIS A 63 1555 1555 2.00 SITE 1 AC1 15 LEU A 23 LEU A 32 PHE A 35 HIS A 39 SITE 2 AC1 15 PRO A 40 GLY A 41 VAL A 45 LEU A 46 SITE 3 AC1 15 GLN A 49 ASN A 57 PHE A 58 HIS A 63 SITE 4 AC1 15 SER A 64 ALA A 67 SER A 71 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 515 0 1 5 5 0 4 6 0 0 0 7 END