HEADER TRANSFERASE 03-FEB-03 1NVI TITLE ORTHORHOMBIC CRYSTAL FORM OF MOLYBDOPTERIN SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOLYBDOPTERIN CONVERTING FACTOR SUBUNIT 1; COMPND 3 CHAIN: D; COMPND 4 FRAGMENT: MOLYBDOPTERIN SYNTHASE - SMALL SUBUNIT; COMPND 5 SYNONYM: MPT SYNTHASE SUBUNIT 1, MOLYBDOPTERIN SYNTHASE SUBUNIT 1, COMPND 6 MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN D, MOLYBDOPTERIN CONVERTING COMPND 7 FACTOR SMALL SUBUNIT; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: MOLYBDOPTERIN CONVERTING FACTOR SUBUNIT 2; COMPND 12 CHAIN: E; COMPND 13 FRAGMENT: MOLYBDOPTERIN SYNTHASE - LARGE SUBUNIT; COMPND 14 SYNONYM: MPT SYNTHASE SUBUNIT 2, MOLYBDOPTERIN SYNTHASE SUBUNIT 2, COMPND 15 MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN E, MOLYBDOPTERIN CONVERTING COMPND 16 FACTOR LARGE SUBUNIT; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: MOAD OR CHLA4 OR CHLM OR B0784; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 12 ORGANISM_TAXID: 562; SOURCE 13 GENE: MOAE OR CHLA5 OR B0785; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS PROTEIN-PROTEIN COMPLEX, MOLYBDENUM COFACTOR BIOSYNTHESIS, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.J.RUDOLPH,M.M.WUEBBENS,O.TURQUE,K.V.RAJAGOPALAN,H.SCHINDELIN REVDAT 4 27-OCT-21 1NVI 1 REMARK SEQADV REVDAT 3 13-JUL-11 1NVI 1 VERSN REVDAT 2 24-FEB-09 1NVI 1 VERSN REVDAT 1 06-MAY-03 1NVI 0 JRNL AUTH M.J.RUDOLPH,M.M.WUEBBENS,O.TURQUE,K.V.RAJAGOPALAN, JRNL AUTH 2 H.SCHINDELIN JRNL TITL STRUCTURAL STUDIES OF MOLYBDOPTERIN SYNTHASE PROVIDE JRNL TITL 2 INSIGHTS INTO ITS CATALYTIC MECHANISM JRNL REF J.BIOL.CHEM. V. 278 14514 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12571227 JRNL DOI 10.1074/JBC.M300449200 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 21024 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1138 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1335 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1758 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 198 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.58000 REMARK 3 B22 (A**2) : -2.32000 REMARK 3 B33 (A**2) : -1.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.135 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.457 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1829 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1643 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2485 ; 1.351 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3803 ; 1.147 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 220 ; 5.820 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 269 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2031 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 385 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 350 ; 0.194 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1896 ; 0.236 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1061 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 123 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.091 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 74 ; 0.278 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.167 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1110 ; 0.639 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1786 ; 1.213 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 719 ; 1.680 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 699 ; 2.832 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 81 REMARK 3 ORIGIN FOR THE GROUP (A): 2.7716 -12.0799 23.5148 REMARK 3 T TENSOR REMARK 3 T11: 0.0777 T22: 0.0782 REMARK 3 T33: 0.0566 T12: -0.0055 REMARK 3 T13: 0.0210 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 1.0567 L22: 5.1538 REMARK 3 L33: 1.5158 L12: 0.4240 REMARK 3 L13: 0.2623 L23: -0.9145 REMARK 3 S TENSOR REMARK 3 S11: -0.0094 S12: 0.0432 S13: 0.0025 REMARK 3 S21: -0.0768 S22: 0.0006 S23: -0.1646 REMARK 3 S31: 0.0302 S32: 0.0930 S33: 0.0089 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 2 E 150 REMARK 3 ORIGIN FOR THE GROUP (A): 0.4635 11.7254 14.4891 REMARK 3 T TENSOR REMARK 3 T11: 0.0182 T22: 0.0878 REMARK 3 T33: 0.0453 T12: -0.0305 REMARK 3 T13: 0.0065 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.8415 L22: 3.2359 REMARK 3 L33: 1.4991 L12: -0.5194 REMARK 3 L13: -0.0902 L23: -0.2696 REMARK 3 S TENSOR REMARK 3 S11: -0.0510 S12: -0.0069 S13: 0.0021 REMARK 3 S21: -0.0094 S22: 0.0201 S23: -0.0885 REMARK 3 S31: 0.1164 S32: 0.0861 S33: 0.0308 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1NVI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAR-03. REMARK 100 THE DEPOSITION ID IS D_1000018249. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 2000 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22162 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 82.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.34600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1FM0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1 M (NH4)2SO4 AND 0.1 M HEPES, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.28900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.72000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.43000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.72000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.28900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.43000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 22.28900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.43000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 68.72000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.43000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 22.28900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.72000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HETEROTETRAMER IN WHICH TWO REMARK 300 MOAE SUBUNITS DIMERIZE VIA A CRYSTALLOGRAPHIC TWOFOLD AXIS: -X, -Y+ REMARK 300 1/2, Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 8450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -105.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 47.43000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH E 262 LIES ON A SPECIAL POSITION. REMARK 375 HOH E 266 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET E 1 REMARK 465 ASN E 40 REMARK 465 HIS E 41 REMARK 465 ASN E 42 REMARK 465 LEU E 43 REMARK 465 GLY E 44 REMARK 465 ASP E 45 REMARK 465 SER E 46 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH E 181 O HOH E 252 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP D 63 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 THR E 59 CA - CB - CG2 ANGL. DEV. = 8.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA D 8 -136.00 56.83 REMARK 500 ASP D 48 148.65 122.47 REMARK 500 THR E 130 147.69 33.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 82 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 83 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 84 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 85 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FM0 RELATED DB: PDB REMARK 900 MONOCLINIC CRYSTAL FORM OF MOLYBDOPTERIN SYNTHASE REMARK 900 RELATED ID: 1FMA RELATED DB: PDB REMARK 900 MONOCLINIC CRYSTAL FORM OF MOLYBDOPTERIN SYNTHASE - COVALENT COMPLEX DBREF 1NVI D 1 81 UNP P30748 MOAD_ECOLI 1 81 DBREF 1NVI E 1 150 UNP P30749 MOAE_ECOLI 0 149 SEQADV 1NVI VAL D 2 UNP P30748 ILE 2 ENGINEERED MUTATION SEQRES 1 D 81 MET VAL LYS VAL LEU PHE PHE ALA GLN VAL ARG GLU LEU SEQRES 2 D 81 VAL GLY THR ASP ALA THR GLU VAL ALA ALA ASP PHE PRO SEQRES 3 D 81 THR VAL GLU ALA LEU ARG GLN HIS MET ALA ALA GLN SER SEQRES 4 D 81 ASP ARG TRP ALA LEU ALA LEU GLU ASP GLY LYS LEU LEU SEQRES 5 D 81 ALA ALA VAL ASN GLN THR LEU VAL SER PHE ASP HIS PRO SEQRES 6 D 81 LEU THR ASP GLY ASP GLU VAL ALA PHE PHE PRO PRO VAL SEQRES 7 D 81 THR GLY GLY SEQRES 1 E 150 MET ALA GLU THR LYS ILE VAL VAL GLY PRO GLN PRO PHE SEQRES 2 E 150 SER VAL GLY GLU GLU TYR PRO TRP LEU ALA GLU ARG ASP SEQRES 3 E 150 GLU ASP GLY ALA VAL VAL THR PHE THR GLY LYS VAL ARG SEQRES 4 E 150 ASN HIS ASN LEU GLY ASP SER VAL ASN ALA LEU THR LEU SEQRES 5 E 150 GLU HIS TYR PRO GLY MET THR GLU LYS ALA LEU ALA GLU SEQRES 6 E 150 ILE VAL ASP GLU ALA ARG ASN ARG TRP PRO LEU GLY ARG SEQRES 7 E 150 VAL THR VAL ILE HIS ARG ILE GLY GLU LEU TRP PRO GLY SEQRES 8 E 150 ASP GLU ILE VAL PHE VAL GLY VAL THR SER ALA HIS ARG SEQRES 9 E 150 SER SER ALA PHE GLU ALA GLY GLN PHE ILE MET ASP TYR SEQRES 10 E 150 LEU LYS THR ARG ALA PRO PHE TRP LYS ARG GLU ALA THR SEQRES 11 E 150 PRO GLU GLY ASP ARG TRP VAL GLU ALA ARG GLU SER ASP SEQRES 12 E 150 GLN GLN ALA ALA LYS ARG TRP HET SO4 D 82 5 HET SO4 D 83 5 HET GOL D 84 6 HET GOL D 85 6 HET SO4 E 151 5 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 3(O4 S 2-) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 8 HOH *198(H2 O) HELIX 1 1 PHE D 7 GLY D 15 1 9 HELIX 2 2 THR D 27 ALA D 37 1 11 HELIX 3 3 SER D 39 GLU D 47 1 9 HELIX 4 4 SER E 14 GLU E 24 1 11 HELIX 5 5 GLY E 57 TRP E 74 1 18 HELIX 6 6 HIS E 103 ALA E 122 1 20 HELIX 7 7 ARG E 140 ARG E 149 1 10 SHEET 1 A 5 ALA D 18 VAL D 21 0 SHEET 2 A 5 VAL D 2 PHE D 6 -1 N VAL D 4 O THR D 19 SHEET 3 A 5 GLU D 71 PHE D 75 1 O VAL D 72 N LYS D 3 SHEET 4 A 5 LEU D 52 VAL D 55 -1 N LEU D 52 O PHE D 75 SHEET 5 A 5 THR D 58 LEU D 59 -1 O THR D 58 N VAL D 55 SHEET 1 B 4 THR E 4 GLY E 9 0 SHEET 2 B 4 LEU E 76 ARG E 84 1 O VAL E 79 N LYS E 5 SHEET 3 B 4 GLU E 93 SER E 101 -1 O GLY E 98 N THR E 80 SHEET 4 B 4 ALA E 30 LYS E 37 -1 N GLY E 36 O ILE E 94 SHEET 1 C 4 GLY E 86 LEU E 88 0 SHEET 2 C 4 LEU E 50 HIS E 54 -1 N LEU E 50 O LEU E 88 SHEET 3 C 4 PHE E 124 GLU E 128 -1 O ARG E 127 N THR E 51 SHEET 4 C 4 ARG E 135 TRP E 136 -1 O ARG E 135 N GLU E 128 SITE 1 AC1 7 HIS E 103 ARG E 104 LYS E 119 HOH E 170 SITE 2 AC1 7 HOH E 196 HOH E 219 HOH E 246 SITE 1 AC2 6 SER D 61 PHE D 62 HOH D 92 HOH D 144 SITE 2 AC2 6 LYS E 148 HOH E 261 SITE 1 AC3 4 VAL D 60 SER D 61 HIS D 64 HOH D 131 SITE 1 AC4 3 SER D 39 ASP D 40 ARG D 41 SITE 1 AC5 4 ASN D 56 HIS D 64 HOH D 95 HOH D 100 CRYST1 44.578 94.860 137.440 90.00 90.00 90.00 I 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022433 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010542 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007276 0.00000 MASTER 398 0 5 7 13 0 7 6 0 0 0 19 END