HEADER ISOMERASE 31-JAN-03 1NUH TITLE THE CRYSTAL STRUCTURE OF HUMAN PHOSPHOGLUCOSE ISOMERASE COMPLEXED WITH TITLE 2 5-PHOSPHOARABINONATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE PHOSPHATE ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHOSPHOGLUCOSE ISOMERASE; COMPND 5 EC: 5.3.1.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GPI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET5A KEYWDS ALDOSE-KETOSE ISOMERASE, GLYCOLYSIS ENZYME, NEUROTROPHIC GROWTH KEYWDS 2 FACTOR, CYTOKINE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.DAVIES REVDAT 5 24-JAN-18 1NUH 1 JRNL REVDAT 4 13-JUL-11 1NUH 1 VERSN REVDAT 3 24-FEB-09 1NUH 1 VERSN REVDAT 2 03-JUN-03 1NUH 1 JRNL REVDAT 1 11-FEB-03 1NUH 0 JRNL AUTH C.DAVIES,H.MUIRHEAD,J.CHIRGWIN JRNL TITL THE STRUCTURE OF HUMAN PHOSPHOGLUCOSE ISOMERASE COMPLEXED JRNL TITL 2 WITH A TRANSITION-STATE ANALOGUE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 59 1111 2003 JRNL REFN ISSN 0907-4449 JRNL PMID 12777791 JRNL DOI 10.1107/S0907444903007352 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.READ,J.PEARCE,X.LI,H.MUIRHEAD,J.CHIRGWIN,C.DAVIES REMARK 1 TITL THE CRYSTAL STRUCTURE OF HUMAN PHOSPHOGLUCOSE ISOMERASE AT REMARK 1 TITL 2 1.6 A RESOLUTION: IMPLICATIONS FOR CATALYTIC MECHANISM, REMARK 1 TITL 3 CYTOKINE ACTIVITY AND HAEMOLYTIC ANAEMIA REMARK 1 REF J.MOL.BIOL. V. 309 447 2001 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.2001.4680 REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 21468 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1101 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.51 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1481 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4424 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 109 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.51000 REMARK 3 B22 (A**2) : -0.51000 REMARK 3 B33 (A**2) : 1.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.815 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.324 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.256 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.310 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.916 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.872 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4570 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6193 ; 1.473 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 554 ; 3.624 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 826 ;17.246 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 671 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3452 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2330 ; 0.241 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 360 ; 0.174 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 132 ; 0.202 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.348 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2755 ; 0.516 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4439 ; 1.008 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1815 ; 1.834 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1754 ; 3.022 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NUH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-FEB-03. REMARK 100 THE DEPOSITION ID IS D_1000018216. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MIRRORS REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21797 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.510 REMARK 200 RESOLUTION RANGE LOW (A) : 94.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : 0.12800 REMARK 200 FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.25400 REMARK 200 R SYM FOR SHELL (I) : 0.25400 REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: REFINEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDN ENTRY 1IAT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.1 M AMMONIUM SULPHATE, 100 MM TRIS REMARK 280 PH 8.5, 5 MM 5-PHOSPHOARABINONATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.55000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.20000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.20000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 102.82500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.20000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.20000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.27500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.20000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.20000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 102.82500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.20000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.20000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.27500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.55000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN. THE BIOLOGICALLY ACTIVE STATE IS REMARK 300 DIMERIC. THE DIMER IS PRODUCED BY APPLYING THE FOLLOWING OPERATION: REMARK 300 Y,X,-Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 15170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -201.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 VAL A 556 REMARK 465 GLN A 557 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 555 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 6 O HOH A 609 1.99 REMARK 500 O GLY A 530 NH2 ARG A 552 2.18 REMARK 500 NE ARG A 136 O1 SO4 A 560 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 567 O HOH A 567 7555 1.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 150 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 371 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 404 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 505 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 46 -6.24 79.21 REMARK 500 LYS A 56 38.77 -78.34 REMARK 500 ASP A 160 -60.33 -143.96 REMARK 500 ASP A 341 114.73 -160.61 REMARK 500 THR A 374 -136.34 -121.58 REMARK 500 ALA A 389 -93.74 -130.66 REMARK 500 LEU A 462 -60.09 -26.56 REMARK 500 GLN A 511 65.90 -162.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 558 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 559 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 560 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 561 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 562 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 563 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PA5 A 564 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IAT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN PHOSPHOGLUCOSE ISOMERASE/NEUROLEUKIN/ REMARK 900 AUTOCRINE MOTILITY FACTOR/MATURATION FACTOR DBREF 1NUH A 0 557 UNP P06744 G6PI_HUMAN 1 558 SEQRES 1 A 558 MET ALA ALA LEU THR ARG ASP PRO GLN PHE GLN LYS LEU SEQRES 2 A 558 GLN GLN TRP TYR ARG GLU HIS ARG SER GLU LEU ASN LEU SEQRES 3 A 558 ARG ARG LEU PHE ASP ALA ASN LYS ASP ARG PHE ASN HIS SEQRES 4 A 558 PHE SER LEU THR LEU ASN THR ASN HIS GLY HIS ILE LEU SEQRES 5 A 558 VAL ASP TYR SER LYS ASN LEU VAL THR GLU ASP VAL MET SEQRES 6 A 558 ARG MET LEU VAL ASP LEU ALA LYS SER ARG GLY VAL GLU SEQRES 7 A 558 ALA ALA ARG GLU ARG MET PHE ASN GLY GLU LYS ILE ASN SEQRES 8 A 558 TYR THR GLU GLY ARG ALA VAL LEU HIS VAL ALA LEU ARG SEQRES 9 A 558 ASN ARG SER ASN THR PRO ILE LEU VAL ASP GLY LYS ASP SEQRES 10 A 558 VAL MET PRO GLU VAL ASN LYS VAL LEU ASP LYS MET LYS SEQRES 11 A 558 SER PHE CYS GLN ARG VAL ARG SER GLY ASP TRP LYS GLY SEQRES 12 A 558 TYR THR GLY LYS THR ILE THR ASP VAL ILE ASN ILE GLY SEQRES 13 A 558 ILE GLY GLY SER ASP LEU GLY PRO LEU MET VAL THR GLU SEQRES 14 A 558 ALA LEU LYS PRO TYR SER SER GLY GLY PRO ARG VAL TRP SEQRES 15 A 558 TYR VAL SER ASN ILE ASP GLY THR HIS ILE ALA LYS THR SEQRES 16 A 558 LEU ALA GLN LEU ASN PRO GLU SER SER LEU PHE ILE ILE SEQRES 17 A 558 ALA SER LYS THR PHE THR THR GLN GLU THR ILE THR ASN SEQRES 18 A 558 ALA GLU THR ALA LYS GLU TRP PHE LEU GLN ALA ALA LYS SEQRES 19 A 558 ASP PRO SER ALA VAL ALA LYS HIS PHE VAL ALA LEU SER SEQRES 20 A 558 THR ASN THR THR LYS VAL LYS GLU PHE GLY ILE ASP PRO SEQRES 21 A 558 GLN ASN MET PHE GLU PHE TRP ASP TRP VAL GLY GLY ARG SEQRES 22 A 558 TYR SER LEU TRP SER ALA ILE GLY LEU SER ILE ALA LEU SEQRES 23 A 558 HIS VAL GLY PHE ASP ASN PHE GLU GLN LEU LEU SER GLY SEQRES 24 A 558 ALA HIS TRP MET ASP GLN HIS PHE ARG THR THR PRO LEU SEQRES 25 A 558 GLU LYS ASN ALA PRO VAL LEU LEU ALA LEU LEU GLY ILE SEQRES 26 A 558 TRP TYR ILE ASN CYS PHE GLY CYS GLU THR HIS ALA MET SEQRES 27 A 558 LEU PRO TYR ASP GLN TYR LEU HIS ARG PHE ALA ALA TYR SEQRES 28 A 558 PHE GLN GLN GLY ASP MET GLU SER ASN GLY LYS TYR ILE SEQRES 29 A 558 THR LYS SER GLY THR ARG VAL ASP HIS GLN THR GLY PRO SEQRES 30 A 558 ILE VAL TRP GLY GLU PRO GLY THR ASN GLY GLN HIS ALA SEQRES 31 A 558 PHE TYR GLN LEU ILE HIS GLN GLY THR LYS MET ILE PRO SEQRES 32 A 558 CYS ASP PHE LEU ILE PRO VAL GLN THR GLN HIS PRO ILE SEQRES 33 A 558 ARG LYS GLY LEU HIS HIS LYS ILE LEU LEU ALA ASN PHE SEQRES 34 A 558 LEU ALA GLN THR GLU ALA LEU MET ARG GLY LYS SER THR SEQRES 35 A 558 GLU GLU ALA ARG LYS GLU LEU GLN ALA ALA GLY LYS SER SEQRES 36 A 558 PRO GLU ASP LEU GLU ARG LEU LEU PRO HIS LYS VAL PHE SEQRES 37 A 558 GLU GLY ASN ARG PRO THR ASN SER ILE VAL PHE THR LYS SEQRES 38 A 558 LEU THR PRO PHE MET LEU GLY ALA LEU VAL ALA MET TYR SEQRES 39 A 558 GLU HIS LYS ILE PHE VAL GLN GLY ILE ILE TRP ASP ILE SEQRES 40 A 558 ASN SER PHE ASP GLN TRP GLY VAL GLU LEU GLY LYS GLN SEQRES 41 A 558 LEU ALA LYS LYS ILE GLU PRO GLU LEU ASP GLY SER ALA SEQRES 42 A 558 GLN VAL THR SER HIS ASP ALA SER THR ASN GLY LEU ILE SEQRES 43 A 558 ASN PHE ILE LYS GLN GLN ARG GLU ALA ARG VAL GLN HET SO4 A 558 5 HET SO4 A 559 5 HET SO4 A 560 5 HET SO4 A 561 5 HET SO4 A 562 5 HET SO4 A 563 5 HET PA5 A 564 15 HETNAM SO4 SULFATE ION HETNAM PA5 5-PHOSPHOARABINONIC ACID FORMUL 2 SO4 6(O4 S 2-) FORMUL 8 PA5 C5 H11 O9 P FORMUL 9 HOH *109(H2 O) HELIX 1 1 ALA A 1 ASP A 6 1 6 HELIX 2 2 ASP A 6 ARG A 20 1 15 HELIX 3 3 SER A 21 LEU A 23 5 3 HELIX 4 4 ASN A 24 ALA A 31 1 8 HELIX 5 5 ASP A 34 PHE A 39 1 6 HELIX 6 6 THR A 60 ARG A 74 1 15 HELIX 7 7 GLY A 75 GLY A 86 1 12 HELIX 8 8 LEU A 98 ARG A 103 1 6 HELIX 9 9 VAL A 117 GLY A 138 1 22 HELIX 10 10 ILE A 156 SER A 159 5 4 HELIX 11 11 ASP A 160 LEU A 170 1 11 HELIX 12 12 LYS A 171 SER A 174 5 4 HELIX 13 13 ASP A 187 ALA A 196 1 10 HELIX 14 14 GLN A 197 LEU A 198 5 2 HELIX 15 15 ASN A 199 GLU A 201 5 3 HELIX 16 16 THR A 214 LYS A 233 1 20 HELIX 17 17 ASP A 234 SER A 236 5 3 HELIX 18 18 ALA A 237 HIS A 241 1 5 HELIX 19 19 ASN A 248 GLY A 256 1 9 HELIX 20 20 ASP A 258 GLN A 260 5 3 HELIX 21 21 GLY A 270 SER A 274 5 5 HELIX 22 22 SER A 277 ILE A 279 5 3 HELIX 23 23 GLY A 280 GLY A 288 1 9 HELIX 24 24 GLY A 288 THR A 309 1 22 HELIX 25 25 PRO A 310 LYS A 313 5 4 HELIX 26 26 ASN A 314 CYS A 329 1 16 HELIX 27 27 ASP A 341 HIS A 345 5 5 HELIX 28 28 ARG A 346 GLY A 360 1 15 HELIX 29 29 THR A 384 ALA A 389 5 6 HELIX 30 30 PHE A 390 GLY A 397 1 8 HELIX 31 31 ILE A 415 LYS A 417 5 3 HELIX 32 32 GLY A 418 GLY A 438 1 21 HELIX 33 33 SER A 440 ALA A 451 1 12 HELIX 34 34 SER A 454 LEU A 462 1 9 HELIX 35 35 PRO A 463 VAL A 466 5 4 HELIX 36 36 THR A 482 TRP A 504 1 23 HELIX 37 37 GLN A 511 LYS A 518 1 8 HELIX 38 38 GLN A 519 LYS A 522 5 4 HELIX 39 39 LYS A 523 ASP A 529 1 7 HELIX 40 40 ASP A 538 GLU A 553 1 16 SHEET 1 A 6 SER A 40 ASN A 44 0 SHEET 2 A 6 HIS A 49 ASP A 53 -1 O VAL A 52 N LEU A 41 SHEET 3 A 6 THR A 473 LYS A 480 -1 O VAL A 477 N LEU A 51 SHEET 4 A 6 CYS A 403 GLN A 410 1 N PHE A 405 O ASN A 474 SHEET 5 A 6 THR A 334 PRO A 339 1 N LEU A 338 O ASP A 404 SHEET 6 A 6 ILE A 377 TRP A 379 1 O ILE A 377 N HIS A 335 SHEET 1 B 2 LEU A 111 VAL A 112 0 SHEET 2 B 2 LYS A 115 ASP A 116 -1 O LYS A 115 N VAL A 112 SHEET 1 C 5 ARG A 179 VAL A 183 0 SHEET 2 C 5 ASP A 150 ILE A 154 1 N VAL A 151 O ARG A 179 SHEET 3 C 5 SER A 203 ALA A 208 1 O LEU A 204 N ILE A 152 SHEET 4 C 5 PHE A 242 SER A 246 1 O VAL A 243 N ILE A 207 SHEET 5 C 5 MET A 262 GLU A 264 1 O PHE A 263 N ALA A 244 LINK NZ LYS A 240 O1 SO4 A 561 1555 1555 1.69 CISPEP 1 GLY A 383 THR A 384 0 2.29 SITE 1 AC1 2 THR A 368 ARG A 369 SITE 1 AC2 3 ARG A 27 ASN A 46 HIS A 47 SITE 1 AC3 2 ARG A 136 HOH A 626 SITE 1 AC4 3 TRP A 140 LYS A 141 LYS A 240 SITE 1 AC5 4 TYR A 173 LYS A 480 THR A 482 HOH A 670 SITE 1 AC6 2 THR A 149 ARG A 179 SITE 1 AC7 14 ILE A 156 GLY A 157 GLY A 158 SER A 159 SITE 2 AC7 14 SER A 209 LYS A 210 THR A 211 THR A 214 SITE 3 AC7 14 GLN A 353 GLU A 357 HIS A 388 LYS A 518 SITE 4 AC7 14 HOH A 566 HOH A 601 CRYST1 94.400 94.400 137.100 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010593 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010593 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007294 0.00000 MASTER 399 0 7 40 13 0 10 6 0 0 0 43 END