HEADER HYDROLASE/HYDROLASE INHIBITOR 02-JAN-03 1NJU TITLE COMPLEX STRUCTURE OF HCMV PROTEASE AND A PEPTIDOMIMETIC INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASSEMBLIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PROTEASE, CAPSID ASSEMBLY PROTEIN; COMPND 5 EC: 3.4.21.97; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 5; SOURCE 3 ORGANISM_COMMON: HUMAN CYTOMEGALOVIRUS; SOURCE 4 ORGANISM_TAXID: 10359; SOURCE 5 GENE: UL80, APNG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEASE, PEPTIDOMIMETIC INHIBITOR, INDUCED-FIT, HYDROLASE-HYDROLASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.KHAYAT,R.BATRA,C.QIAN,T.HALMOS,M.BAILEY,L.TONG REVDAT 4 27-OCT-21 1NJU 1 REMARK SEQADV SHEET LINK REVDAT 3 13-JUL-11 1NJU 1 VERSN REVDAT 2 24-FEB-09 1NJU 1 VERSN REVDAT 1 11-FEB-03 1NJU 0 JRNL AUTH R.KHAYAT,R.BATRA,C.QIAN,T.HALMOS,M.BAILEY,L.TONG JRNL TITL STRUCTURAL AND BIOCHEMICAL STUDIES OF INHIBITOR BINDING TO JRNL TITL 2 HUMAN CYTOMEGALOVIRUS PROTEASE JRNL REF BIOCHEMISTRY V. 42 885 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 12549906 JRNL DOI 10.1021/BI027045S REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2089328.800 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 81.7 REMARK 3 NUMBER OF REFLECTIONS : 27260 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1910 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 62.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3188 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 230 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7188 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 204 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 14.25000 REMARK 3 B22 (A**2) : -11.50000 REMARK 3 B33 (A**2) : -2.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM SIGMAA (A) : 0.26 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.39 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.930 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.300 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.310 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.580 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.450 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 16.60 REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : PARAM.HCMV REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : TOP.HCMV REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NJU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-03. REMARK 100 THE DEPOSITION ID IS D_1000017933. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32973 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: COMO REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, HEPES, EDTA, SODIUM REMARK 280 CHLORIDE, SODIUM SULFATE, DTT, SPERMINE_HCL, GLYCEROL, PH 7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 52.73000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 106.76500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 52.73000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 106.76500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 MET A 3 REMARK 465 GLY A 47 REMARK 465 GLN A 48 REMARK 465 GLY A 49 REMARK 465 GLN A 50 REMARK 465 PRO A 51 REMARK 465 SER A 52 REMARK 465 ALA A 144 REMARK 465 THR A 145 REMARK 465 SER A 146 REMARK 465 LEU A 147 REMARK 465 SER A 148 REMARK 465 GLY A 149 REMARK 465 SER A 150 REMARK 465 GLU A 151 REMARK 465 ARG A 201 REMARK 465 CYS A 202 REMARK 465 GLY A 203 REMARK 465 SER A 204 REMARK 465 THR A 205 REMARK 465 ALA A 206 REMARK 465 VAL A 207 REMARK 465 ASP A 208 REMARK 465 ALA A 209 REMARK 465 MET B 301 REMARK 465 THR B 302 REMARK 465 MET B 303 REMARK 465 GLY B 347 REMARK 465 GLN B 348 REMARK 465 GLY B 349 REMARK 465 GLN B 350 REMARK 465 PRO B 351 REMARK 465 SER B 352 REMARK 465 LEU B 353 REMARK 465 ALA B 444 REMARK 465 THR B 445 REMARK 465 SER B 446 REMARK 465 LEU B 447 REMARK 465 SER B 448 REMARK 465 GLY B 449 REMARK 465 SER B 450 REMARK 465 GLU B 451 REMARK 465 ARG B 501 REMARK 465 CYS B 502 REMARK 465 GLY B 503 REMARK 465 SER B 504 REMARK 465 THR B 505 REMARK 465 ALA B 506 REMARK 465 VAL B 507 REMARK 465 ASP B 508 REMARK 465 MET C 1001 REMARK 465 THR C 1002 REMARK 465 MET C 1003 REMARK 465 GLY C 1047 REMARK 465 GLN C 1048 REMARK 465 GLY C 1049 REMARK 465 GLN C 1050 REMARK 465 PRO C 1051 REMARK 465 SER C 1052 REMARK 465 VAL C 1141 REMARK 465 GLU C 1142 REMARK 465 GLN C 1143 REMARK 465 ALA C 1144 REMARK 465 THR C 1145 REMARK 465 SER C 1146 REMARK 465 LEU C 1147 REMARK 465 SER C 1148 REMARK 465 GLY C 1149 REMARK 465 SER C 1150 REMARK 465 GLU C 1151 REMARK 465 ARG C 1201 REMARK 465 CYS C 1202 REMARK 465 GLY C 1203 REMARK 465 SER C 1204 REMARK 465 THR C 1205 REMARK 465 ALA C 1206 REMARK 465 VAL C 1207 REMARK 465 ASP C 1208 REMARK 465 ALA C 1209 REMARK 465 MET D 1301 REMARK 465 THR D 1302 REMARK 465 MET D 1303 REMARK 465 GLY D 1347 REMARK 465 GLN D 1348 REMARK 465 GLY D 1349 REMARK 465 GLN D 1350 REMARK 465 PRO D 1351 REMARK 465 SER D 1352 REMARK 465 ALA D 1444 REMARK 465 THR D 1445 REMARK 465 SER D 1446 REMARK 465 LEU D 1447 REMARK 465 SER D 1448 REMARK 465 GLY D 1449 REMARK 465 SER D 1450 REMARK 465 GLU D 1451 REMARK 465 ARG D 1501 REMARK 465 CYS D 1502 REMARK 465 GLY D 1503 REMARK 465 SER D 1504 REMARK 465 THR D 1505 REMARK 465 ALA D 1506 REMARK 465 VAL D 1507 REMARK 465 ASP D 1508 REMARK 465 ALA D 1509 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 395 NH2 ARG B 398 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 54 -98.27 -58.10 REMARK 500 ASN A 62 52.54 38.84 REMARK 500 SER A 113 -87.02 6.40 REMARK 500 ASP A 118 84.92 -154.62 REMARK 500 TYR A 128 72.56 -116.46 REMARK 500 CYS A 138 -71.82 -78.86 REMARK 500 ASP A 139 6.79 49.47 REMARK 500 ASP A 140 79.40 63.21 REMARK 500 VAL A 141 -114.35 -152.30 REMARK 500 VAL A 163 142.12 -172.36 REMARK 500 TRP A 199 27.39 -68.41 REMARK 500 ASN B 362 53.94 36.61 REMARK 500 SER B 413 -87.51 6.37 REMARK 500 ASP B 418 82.78 -158.43 REMARK 500 TYR B 428 71.70 -116.89 REMARK 500 CYS B 438 -71.58 -79.96 REMARK 500 ASP B 439 7.35 49.17 REMARK 500 ASP B 440 79.45 62.97 REMARK 500 VAL B 441 -114.54 -152.32 REMARK 500 VAL B 463 142.72 -172.00 REMARK 500 SER B 510 39.29 74.03 REMARK 500 GLU B 533 29.65 49.97 REMARK 500 VAL C1011 30.25 -89.59 REMARK 500 LEU C1034 81.80 -151.40 REMARK 500 ALA C1045 49.82 -91.21 REMARK 500 SER C1054 -75.46 -48.88 REMARK 500 ALA C1056 117.17 -34.68 REMARK 500 ASN C1062 49.70 32.96 REMARK 500 HIS C1063 -3.63 70.79 REMARK 500 ALA C1067 48.88 -109.22 REMARK 500 SER C1113 -73.85 7.11 REMARK 500 ASP C1118 89.36 -151.73 REMARK 500 TYR C1128 61.77 -118.65 REMARK 500 ARG C1137 104.71 -42.05 REMARK 500 CYS C1138 87.06 -66.10 REMARK 500 THR C1169 45.01 -90.86 REMARK 500 TRP C1199 34.19 -69.80 REMARK 500 SER C1216 -165.61 -121.66 REMARK 500 VAL C1247 -3.05 -57.67 REMARK 500 VAL D1311 31.18 -89.64 REMARK 500 LEU D1334 80.31 -151.43 REMARK 500 SER D1354 -73.81 -8.78 REMARK 500 ALA D1356 116.94 -35.18 REMARK 500 ASN D1362 47.30 35.34 REMARK 500 HIS D1363 -1.40 70.80 REMARK 500 SER D1413 -74.39 8.82 REMARK 500 ASP D1418 89.22 -150.75 REMARK 500 TYR D1428 60.18 -118.92 REMARK 500 ARG D1437 105.57 -43.16 REMARK 500 CYS D1438 86.89 -66.28 REMARK 500 REMARK 500 THIS ENTRY HAS 54 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR D1530 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE INHIBITOR 0FP IS COVALENTLY CONNECTED AT CARBON C4 REMARK 600 TO THE ACTIVE SITE SERINES (A 132, B 432, C 1132, D 1432) VIA REMARK 600 HEMIKETAL LINKAGES REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR REMARK 630 MOLECULE NAME: N-(6-AMINOHEXANOYL)-3-METHYL-L-VALYL-3-METHYL-L- REMARK 630 VALYL-N~1~-[(2S,3S)-3-HYDROXY-4-OXO-4-{[(1R)-1-PHENYLPROPYL]AMINO} REMARK 630 BUTAN-2-YL]-N~4~,N~4~-DIMETHYL-L-ASPARTAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 0FP A 260 REMARK 630 0FP B 560 REMARK 630 0FP C 1260 REMARK 630 0FP D 1560 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: ACA TBG TBG DMH 9AL REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0FP A 260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0FP B 560 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0FP C 1260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0FP D 1560 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NJT RELATED DB: PDB REMARK 900 RELATED ID: 1NKK RELATED DB: PDB REMARK 900 RELATED ID: 1NKM RELATED DB: PDB DBREF 1NJU A 1 256 UNP P16753 VP40_HCMVA 1 256 DBREF 1NJU B 301 556 UNP P16753 VP40_HCMVA 1 256 DBREF 1NJU C 1001 1256 UNP P16753 VP40_HCMVA 1 256 DBREF 1NJU D 1301 1556 UNP P16753 VP40_HCMVA 1 256 SEQADV 1NJU GLN A 143 UNP P16753 ALA 143 ENGINEERED MUTATION SEQADV 1NJU GLN B 443 UNP P16753 ALA 143 ENGINEERED MUTATION SEQADV 1NJU GLN C 1143 UNP P16753 ALA 143 ENGINEERED MUTATION SEQADV 1NJU GLN D 1443 UNP P16753 ALA 143 ENGINEERED MUTATION SEQRES 1 A 256 MET THR MET ASP GLU GLN GLN SER GLN ALA VAL ALA PRO SEQRES 2 A 256 VAL TYR VAL GLY GLY PHE LEU ALA ARG TYR ASP GLN SER SEQRES 3 A 256 PRO ASP GLU ALA GLU LEU LEU LEU PRO ARG ASP VAL VAL SEQRES 4 A 256 GLU HIS TRP LEU HIS ALA GLN GLY GLN GLY GLN PRO SER SEQRES 5 A 256 LEU SER VAL ALA LEU PRO LEU ASN ILE ASN HIS ASP ASP SEQRES 6 A 256 THR ALA VAL VAL GLY HIS VAL ALA ALA MET GLN SER VAL SEQRES 7 A 256 ARG ASP GLY LEU PHE CYS LEU GLY CYS VAL THR SER PRO SEQRES 8 A 256 ARG PHE LEU GLU ILE VAL ARG ARG ALA SER GLU LYS SER SEQRES 9 A 256 GLU LEU VAL SER ARG GLY PRO VAL SER PRO LEU GLN PRO SEQRES 10 A 256 ASP LYS VAL VAL GLU PHE LEU SER GLY SER TYR ALA GLY SEQRES 11 A 256 LEU SER LEU SER SER ARG ARG CYS ASP ASP VAL GLU GLN SEQRES 12 A 256 ALA THR SER LEU SER GLY SER GLU THR THR PRO PHE LYS SEQRES 13 A 256 HIS VAL ALA LEU CYS SER VAL GLY ARG ARG ARG GLY THR SEQRES 14 A 256 LEU ALA VAL TYR GLY ARG ASP PRO GLU TRP VAL THR GLN SEQRES 15 A 256 ARG PHE PRO ASP LEU THR ALA ALA ASP ARG ASP GLY LEU SEQRES 16 A 256 ARG ALA GLN TRP GLN ARG CYS GLY SER THR ALA VAL ASP SEQRES 17 A 256 ALA SER GLY ASP PRO PHE ARG SER ASP SER TYR GLY LEU SEQRES 18 A 256 LEU GLY ASN SER VAL ASP ALA LEU TYR ILE ARG GLU ARG SEQRES 19 A 256 LEU PRO LYS LEU ARG TYR ASP LYS GLN LEU VAL GLY VAL SEQRES 20 A 256 THR GLU ARG GLU SER TYR VAL LYS ALA SEQRES 1 B 256 MET THR MET ASP GLU GLN GLN SER GLN ALA VAL ALA PRO SEQRES 2 B 256 VAL TYR VAL GLY GLY PHE LEU ALA ARG TYR ASP GLN SER SEQRES 3 B 256 PRO ASP GLU ALA GLU LEU LEU LEU PRO ARG ASP VAL VAL SEQRES 4 B 256 GLU HIS TRP LEU HIS ALA GLN GLY GLN GLY GLN PRO SER SEQRES 5 B 256 LEU SER VAL ALA LEU PRO LEU ASN ILE ASN HIS ASP ASP SEQRES 6 B 256 THR ALA VAL VAL GLY HIS VAL ALA ALA MET GLN SER VAL SEQRES 7 B 256 ARG ASP GLY LEU PHE CYS LEU GLY CYS VAL THR SER PRO SEQRES 8 B 256 ARG PHE LEU GLU ILE VAL ARG ARG ALA SER GLU LYS SER SEQRES 9 B 256 GLU LEU VAL SER ARG GLY PRO VAL SER PRO LEU GLN PRO SEQRES 10 B 256 ASP LYS VAL VAL GLU PHE LEU SER GLY SER TYR ALA GLY SEQRES 11 B 256 LEU SER LEU SER SER ARG ARG CYS ASP ASP VAL GLU GLN SEQRES 12 B 256 ALA THR SER LEU SER GLY SER GLU THR THR PRO PHE LYS SEQRES 13 B 256 HIS VAL ALA LEU CYS SER VAL GLY ARG ARG ARG GLY THR SEQRES 14 B 256 LEU ALA VAL TYR GLY ARG ASP PRO GLU TRP VAL THR GLN SEQRES 15 B 256 ARG PHE PRO ASP LEU THR ALA ALA ASP ARG ASP GLY LEU SEQRES 16 B 256 ARG ALA GLN TRP GLN ARG CYS GLY SER THR ALA VAL ASP SEQRES 17 B 256 ALA SER GLY ASP PRO PHE ARG SER ASP SER TYR GLY LEU SEQRES 18 B 256 LEU GLY ASN SER VAL ASP ALA LEU TYR ILE ARG GLU ARG SEQRES 19 B 256 LEU PRO LYS LEU ARG TYR ASP LYS GLN LEU VAL GLY VAL SEQRES 20 B 256 THR GLU ARG GLU SER TYR VAL LYS ALA SEQRES 1 C 256 MET THR MET ASP GLU GLN GLN SER GLN ALA VAL ALA PRO SEQRES 2 C 256 VAL TYR VAL GLY GLY PHE LEU ALA ARG TYR ASP GLN SER SEQRES 3 C 256 PRO ASP GLU ALA GLU LEU LEU LEU PRO ARG ASP VAL VAL SEQRES 4 C 256 GLU HIS TRP LEU HIS ALA GLN GLY GLN GLY GLN PRO SER SEQRES 5 C 256 LEU SER VAL ALA LEU PRO LEU ASN ILE ASN HIS ASP ASP SEQRES 6 C 256 THR ALA VAL VAL GLY HIS VAL ALA ALA MET GLN SER VAL SEQRES 7 C 256 ARG ASP GLY LEU PHE CYS LEU GLY CYS VAL THR SER PRO SEQRES 8 C 256 ARG PHE LEU GLU ILE VAL ARG ARG ALA SER GLU LYS SER SEQRES 9 C 256 GLU LEU VAL SER ARG GLY PRO VAL SER PRO LEU GLN PRO SEQRES 10 C 256 ASP LYS VAL VAL GLU PHE LEU SER GLY SER TYR ALA GLY SEQRES 11 C 256 LEU SER LEU SER SER ARG ARG CYS ASP ASP VAL GLU GLN SEQRES 12 C 256 ALA THR SER LEU SER GLY SER GLU THR THR PRO PHE LYS SEQRES 13 C 256 HIS VAL ALA LEU CYS SER VAL GLY ARG ARG ARG GLY THR SEQRES 14 C 256 LEU ALA VAL TYR GLY ARG ASP PRO GLU TRP VAL THR GLN SEQRES 15 C 256 ARG PHE PRO ASP LEU THR ALA ALA ASP ARG ASP GLY LEU SEQRES 16 C 256 ARG ALA GLN TRP GLN ARG CYS GLY SER THR ALA VAL ASP SEQRES 17 C 256 ALA SER GLY ASP PRO PHE ARG SER ASP SER TYR GLY LEU SEQRES 18 C 256 LEU GLY ASN SER VAL ASP ALA LEU TYR ILE ARG GLU ARG SEQRES 19 C 256 LEU PRO LYS LEU ARG TYR ASP LYS GLN LEU VAL GLY VAL SEQRES 20 C 256 THR GLU ARG GLU SER TYR VAL LYS ALA SEQRES 1 D 256 MET THR MET ASP GLU GLN GLN SER GLN ALA VAL ALA PRO SEQRES 2 D 256 VAL TYR VAL GLY GLY PHE LEU ALA ARG TYR ASP GLN SER SEQRES 3 D 256 PRO ASP GLU ALA GLU LEU LEU LEU PRO ARG ASP VAL VAL SEQRES 4 D 256 GLU HIS TRP LEU HIS ALA GLN GLY GLN GLY GLN PRO SER SEQRES 5 D 256 LEU SER VAL ALA LEU PRO LEU ASN ILE ASN HIS ASP ASP SEQRES 6 D 256 THR ALA VAL VAL GLY HIS VAL ALA ALA MET GLN SER VAL SEQRES 7 D 256 ARG ASP GLY LEU PHE CYS LEU GLY CYS VAL THR SER PRO SEQRES 8 D 256 ARG PHE LEU GLU ILE VAL ARG ARG ALA SER GLU LYS SER SEQRES 9 D 256 GLU LEU VAL SER ARG GLY PRO VAL SER PRO LEU GLN PRO SEQRES 10 D 256 ASP LYS VAL VAL GLU PHE LEU SER GLY SER TYR ALA GLY SEQRES 11 D 256 LEU SER LEU SER SER ARG ARG CYS ASP ASP VAL GLU GLN SEQRES 12 D 256 ALA THR SER LEU SER GLY SER GLU THR THR PRO PHE LYS SEQRES 13 D 256 HIS VAL ALA LEU CYS SER VAL GLY ARG ARG ARG GLY THR SEQRES 14 D 256 LEU ALA VAL TYR GLY ARG ASP PRO GLU TRP VAL THR GLN SEQRES 15 D 256 ARG PHE PRO ASP LEU THR ALA ALA ASP ARG ASP GLY LEU SEQRES 16 D 256 ARG ALA GLN TRP GLN ARG CYS GLY SER THR ALA VAL ASP SEQRES 17 D 256 ALA SER GLY ASP PRO PHE ARG SER ASP SER TYR GLY LEU SEQRES 18 D 256 LEU GLY ASN SER VAL ASP ALA LEU TYR ILE ARG GLU ARG SEQRES 19 D 256 LEU PRO LYS LEU ARG TYR ASP LYS GLN LEU VAL GLY VAL SEQRES 20 D 256 THR GLU ARG GLU SER TYR VAL LYS ALA HET 0FP A 260 51 HET 0FP B 560 51 HET 0FP C1260 51 HET 0FP D1560 51 HETNAM 0FP N-(6-AMINOHEXANOYL)-3-METHYL-L-VALYL-3-METHYL-L-VALYL- HETNAM 2 0FP N~1~-[(2S,3S)-3-HYDROXY-4-OXO-4-{[(1R)-1- HETNAM 3 0FP PHENYLPROPYL]AMINO}BUTAN-2-YL]-N~4~,N~4~-DIMETHYL-L- HETNAM 4 0FP ASPARTAMIDE HETSYN 0FP BILC 408 FORMUL 5 0FP 4(C37 H63 N7 O7) HELIX 1 1 GLU A 5 VAL A 11 1 7 HELIX 2 2 GLU A 29 LEU A 33 5 5 HELIX 3 3 PRO A 35 GLN A 46 1 12 HELIX 4 4 SER A 90 LYS A 103 1 14 HELIX 5 5 SER A 104 ARG A 109 1 6 HELIX 6 6 ASP A 118 TYR A 128 1 11 HELIX 7 7 ASP A 176 GLN A 182 1 7 HELIX 8 8 THR A 188 TRP A 199 1 12 HELIX 9 9 ASP A 217 TYR A 230 1 14 HELIX 10 10 GLU A 233 VAL A 245 1 13 HELIX 11 11 GLU B 305 VAL B 311 1 7 HELIX 12 12 GLU B 329 LEU B 333 5 5 HELIX 13 13 PRO B 335 GLN B 346 1 12 HELIX 14 14 SER B 390 LYS B 403 1 14 HELIX 15 15 SER B 404 ARG B 409 1 6 HELIX 16 16 ASP B 418 TYR B 428 1 11 HELIX 17 17 ASP B 476 GLN B 482 1 7 HELIX 18 18 THR B 488 TRP B 499 1 12 HELIX 19 19 ASP B 517 TYR B 530 1 14 HELIX 20 20 GLU B 533 VAL B 545 1 13 HELIX 21 21 GLU C 1005 VAL C 1011 1 7 HELIX 22 22 GLU C 1029 LEU C 1033 5 5 HELIX 23 23 PRO C 1035 ALA C 1045 1 11 HELIX 24 24 SER C 1090 GLU C 1102 1 13 HELIX 25 25 SER C 1104 ARG C 1109 1 6 HELIX 26 26 ASP C 1118 TYR C 1128 1 11 HELIX 27 27 ASP C 1176 GLN C 1182 1 7 HELIX 28 28 THR C 1188 ALA C 1197 1 10 HELIX 29 29 ASP C 1217 LEU C 1229 1 13 HELIX 30 30 GLU C 1233 GLY C 1246 1 14 HELIX 31 31 GLU D 1305 VAL D 1311 1 7 HELIX 32 32 GLU D 1329 LEU D 1333 5 5 HELIX 33 33 PRO D 1335 ALA D 1345 1 11 HELIX 34 34 SER D 1390 GLU D 1402 1 13 HELIX 35 35 SER D 1404 ARG D 1409 1 6 HELIX 36 36 ASP D 1418 TYR D 1428 1 11 HELIX 37 37 ASP D 1476 ARG D 1483 1 8 HELIX 38 38 THR D 1488 ALA D 1497 1 10 HELIX 39 39 ASP D 1517 LEU D 1529 1 13 HELIX 40 40 GLU D 1533 GLY D 1546 1 14 SHEET 1 A 7 VAL A 172 GLY A 174 0 SHEET 2 A 7 VAL A 14 ARG A 22 -1 N GLY A 17 O VAL A 172 SHEET 3 A 7 GLY A 81 VAL A 88 -1 O GLY A 86 N VAL A 16 SHEET 4 A 7 VAL A 68 SER A 77 -1 N GLN A 76 O PHE A 83 SHEET 5 A 7 PRO A 58 ILE A 61 -1 N LEU A 59 O VAL A 69 SHEET 6 A 7 PHE A 155 CYS A 161 1 O LEU A 160 N ASN A 60 SHEET 7 A 7 GLY A 130 ARG A 136 -1 N GLY A 130 O CYS A 161 SHEET 1 B 7 VAL B 472 GLY B 474 0 SHEET 2 B 7 VAL B 314 ARG B 322 -1 N GLY B 317 O VAL B 472 SHEET 3 B 7 GLY B 381 VAL B 388 -1 O GLY B 386 N VAL B 316 SHEET 4 B 7 VAL B 368 SER B 377 -1 N GLN B 376 O PHE B 383 SHEET 5 B 7 PRO B 358 ILE B 361 -1 N LEU B 359 O VAL B 369 SHEET 6 B 7 PHE B 455 CYS B 461 1 O LEU B 460 N ASN B 360 SHEET 7 B 7 GLY B 430 ARG B 436 -1 N GLY B 430 O CYS B 461 SHEET 1 C 7 VAL C1172 GLY C1174 0 SHEET 2 C 7 VAL C1014 ARG C1022 -1 N TYR C1015 O GLY C1174 SHEET 3 C 7 GLY C1081 VAL C1088 -1 O GLY C1086 N VAL C1016 SHEET 4 C 7 VAL C1068 VAL C1078 -1 N GLN C1076 O PHE C1083 SHEET 5 C 7 LEU C1057 ILE C1061 -1 N LEU C1059 O VAL C1069 SHEET 6 C 7 PHE C1155 CYS C1161 1 O LEU C1160 N ASN C1060 SHEET 7 C 7 GLY C1130 ARG C1136 -1 N GLY C1130 O CYS C1161 SHEET 1 D 7 VAL D1472 GLY D1474 0 SHEET 2 D 7 VAL D1314 ARG D1322 -1 N TYR D1315 O GLY D1474 SHEET 3 D 7 GLY D1381 VAL D1388 -1 O GLY D1386 N VAL D1316 SHEET 4 D 7 VAL D1368 VAL D1378 -1 N GLN D1376 O PHE D1383 SHEET 5 D 7 LEU D1357 ILE D1361 -1 N LEU D1359 O VAL D1369 SHEET 6 D 7 PHE D1455 CYS D1461 1 O LEU D1460 N ASN D1360 SHEET 7 D 7 GLY D1430 ARG D1436 -1 N GLY D1430 O CYS D1461 LINK OG SER A 132 C4 0FP A 260 1555 1555 1.44 LINK OG SER B 432 C4 0FP B 560 1555 1555 1.44 LINK OG SER C1132 C4 0FP C1260 1555 1555 1.44 LINK OG SER D1432 C4 0FP D1560 1555 1555 1.43 SITE 1 AC1 15 GLU A 31 ASN A 62 HIS A 63 SER A 132 SITE 2 AC1 15 LEU A 133 SER A 134 SER A 135 ARG A 136 SITE 3 AC1 15 ARG A 137 CYS A 161 VAL A 163 GLY A 164 SITE 4 AC1 15 ARG A 165 ARG A 166 ILE A 231 SITE 1 AC2 16 GLU B 331 ASN B 362 HIS B 363 SER B 432 SITE 2 AC2 16 LEU B 433 SER B 434 SER B 435 ARG B 436 SITE 3 AC2 16 ARG B 437 LYS B 456 CYS B 461 VAL B 463 SITE 4 AC2 16 GLY B 464 ARG B 465 ARG B 466 ILE B 531 SITE 1 AC3 15 GLU C1031 ASN C1062 HIS C1063 SER C1132 SITE 2 AC3 15 LEU C1133 SER C1134 SER C1135 ARG C1136 SITE 3 AC3 15 ARG C1137 LYS C1156 CYS C1161 VAL C1163 SITE 4 AC3 15 GLY C1164 ARG C1165 ILE C1231 SITE 1 AC4 16 GLU D1331 HIS D1363 SER D1432 LEU D1433 SITE 2 AC4 16 SER D1434 SER D1435 ARG D1436 ARG D1437 SITE 3 AC4 16 ASP D1439 LYS D1456 CYS D1461 VAL D1463 SITE 4 AC4 16 GLY D1464 ARG D1465 ARG D1466 ILE D1531 CRYST1 105.460 213.530 52.330 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009482 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004683 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019109 0.00000 MASTER 495 0 4 40 28 0 16 6 0 0 0 80 END