HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 23-DEC-02 1NI9 TITLE 2.0 A STRUCTURE OF GLYCEROL METABOLISM PROTEIN FROM E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN GLPX; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: GLPX OR B3925; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, TWO DOMAIN STRUCTURE OF TWO ALPHA/BETA KEYWDS 2 FOLDS, EXTENDED BETA SHEETS, PSI, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 4 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR R.SANISHVILI,J.BRUNZELLE,A.SAVCHENKO,A.M.EDWARDS, AUTHOR 2 A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 3 10-FEB-09 1NI9 1 VERSN JRNL REVDAT 2 18-JAN-05 1NI9 1 AUTHOR KEYWDS REMARK REVDAT 1 15-JUL-03 1NI9 0 JRNL AUTH G.BROWN,A.SINGER,V.V.LUNIN,M.PROUDFOOT,T.SKARINA, JRNL AUTH 2 R.FLICK,S.KOCHINYAN,R.SANISHVILI,A.JOACHIMIAK, JRNL AUTH 3 A.M.EDWARDS,A.SAVCHENKO,A.F.YAKUNIN JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF THE JRNL TITL 2 TYPE II FRUCTOSE-1,6-BISPHOSPHATASE GLPX FROM JRNL TITL 3 ESCHERICHIA COLI. JRNL REF J.BIOL.CHEM. V. 284 3784 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19073594 JRNL DOI 10.1074/JBC.M808186200 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 20446 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1095 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1224 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2192 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 143 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.05000 REMARK 3 B22 (A**2) : 1.05000 REMARK 3 B33 (A**2) : -2.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.179 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.172 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.317 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2218 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2182 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3002 ; 1.895 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5036 ; 0.952 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 286 ; 6.541 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 370 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2436 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 412 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 443 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2587 ; 0.249 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1548 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 107 ; 0.206 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.274 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 86 ; 0.330 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.184 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1441 ; 1.001 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2310 ; 1.752 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 777 ; 2.672 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 692 ; 4.356 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 326 REMARK 3 ORIGIN FOR THE GROUP (A): 24.8778 10.8234 46.5481 REMARK 3 T TENSOR REMARK 3 T11: 0.0048 T22: 0.0177 REMARK 3 T33: 0.0284 T12: -0.0089 REMARK 3 T13: 0.0000 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.4422 L22: 0.2659 REMARK 3 L33: 1.2946 L12: 0.0502 REMARK 3 L13: -0.5558 L23: -0.2161 REMARK 3 S TENSOR REMARK 3 S11: 0.0005 S12: 0.0723 S13: -0.0499 REMARK 3 S21: -0.0576 S22: -0.0051 S23: 0.0357 REMARK 3 S31: 0.0570 S32: -0.0897 S33: 0.0045 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 402 A 401 REMARK 3 ORIGIN FOR THE GROUP (A): 25.2304 11.8955 50.7452 REMARK 3 T TENSOR REMARK 3 T11: 0.0523 T22: 0.0490 REMARK 3 T33: 0.0788 T12: -0.0061 REMARK 3 T13: -0.0120 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.3602 L22: 0.0511 REMARK 3 L33: 1.0261 L12: 0.2047 REMARK 3 L13: -0.5566 L23: -0.2472 REMARK 3 S TENSOR REMARK 3 S11: 0.0106 S12: 0.0322 S13: -0.0007 REMARK 3 S21: -0.0125 S22: -0.0072 S23: -0.0113 REMARK 3 S31: 0.0237 S32: -0.0373 S33: -0.0034 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 1NI9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-03. REMARK 100 THE RCSB ID CODE IS RCSB017896. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-02; 19-DEC-01 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 19-ID; 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793, 0.9795; 1.0332 REMARK 200 MONOCHROMATOR : SAGITTALLY FOCUSING DOUBLE REMARK 200 CRYSTAL SI(111); SAGITTALLY REMARK 200 FOCUSING DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : MIRROR; MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE; CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22955 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.66000 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.32700 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE/RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.87000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 30.72650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 30.72650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.93500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 30.72650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 30.72650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 128.80500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 30.72650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.72650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 42.93500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 30.72650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.72650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 128.80500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 85.87000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). THE AUTHORS STATE THE REMARK 300 BIOLOGICAL UNIT IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 60 REMARK 465 ASP A 61 REMARK 465 GLU A 62 REMARK 465 ARG A 91 REMARK 465 MET A 92 REMARK 465 THR A 93 REMARK 465 ALA A 94 REMARK 465 MET A 95 REMARK 465 GLY A 96 REMARK 465 PRO A 165 REMARK 465 ARG A 166 REMARK 465 ARG A 235 REMARK 465 HIS A 236 REMARK 465 ASP A 237 REMARK 465 VAL A 238 REMARK 465 LYS A 239 REMARK 465 GLY A 240 REMARK 465 ASP A 241 REMARK 465 ASN A 242 REMARK 465 GLU A 243 REMARK 465 GLU A 244 REMARK 465 ASN A 245 REMARK 465 ARG A 246 REMARK 465 ARG A 247 REMARK 465 ILE A 248 REMARK 465 GLY A 249 REMARK 465 GLU A 250 REMARK 465 GLN A 251 REMARK 465 GLU A 252 REMARK 465 LEU A 253 REMARK 465 ALA A 254 REMARK 465 ARG A 255 REMARK 465 CYS A 256 REMARK 465 LYS A 257 REMARK 465 ALA A 258 REMARK 465 MET A 259 REMARK 465 LYS A 327 REMARK 465 ASP A 328 REMARK 465 PRO A 329 REMARK 465 GLU A 330 REMARK 465 MET A 331 REMARK 465 GLN A 332 REMARK 465 VAL A 333 REMARK 465 HIS A 334 REMARK 465 ILE A 335 REMARK 465 LEU A 336 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 29 CD CE NZ REMARK 470 GLU A 59 CB CG CD OE1 OE2 REMARK 470 THR A 90 OG1 CG2 REMARK 470 GLN A 97 CG CD OE1 NE2 REMARK 470 LYS A 164 CG CD CE NZ REMARK 470 GLU A 262 CG CD OE1 OE2 REMARK 470 LYS A 297 CE NZ REMARK 470 ARG A 326 CA C O CB CG CD NE REMARK 470 ARG A 326 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 313 O HOH A 468 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 1 CG - SD - CE ANGL. DEV. = -10.5 DEGREES REMARK 500 ASP A 50 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 188 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 199 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG A 316 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 317 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 134 107.49 -166.23 REMARK 500 ILE A 261 -58.87 -139.75 REMARK 500 GLU A 262 160.14 167.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 400 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC5007 RELATED DB: TARGETDB DBREF 1NI9 A 1 336 UNP P0A9C9 GLPX_ECOLI 1 336 SEQADV 1NI9 GLY A -1 UNP P0A9C9 CLONING ARTIFACT SEQADV 1NI9 HIS A 0 UNP P0A9C9 CLONING ARTIFACT SEQRES 1 A 338 GLY HIS MET ARG ARG GLU LEU ALA ILE GLU PHE SER ARG SEQRES 2 A 338 VAL THR GLU SER ALA ALA LEU ALA GLY TYR LYS TRP LEU SEQRES 3 A 338 GLY ARG GLY ASP LYS ASN THR ALA ASP GLY ALA ALA VAL SEQRES 4 A 338 ASN ALA MET ARG ILE MET LEU ASN GLN VAL ASN ILE ASP SEQRES 5 A 338 GLY THR ILE VAL ILE GLY GLU GLY GLU ILE ASP GLU ALA SEQRES 6 A 338 PRO MET LEU TYR ILE GLY GLU LYS VAL GLY THR GLY ARG SEQRES 7 A 338 GLY ASP ALA VAL ASP ILE ALA VAL ASP PRO ILE GLU GLY SEQRES 8 A 338 THR ARG MET THR ALA MET GLY GLN ALA ASN ALA LEU ALA SEQRES 9 A 338 VAL LEU ALA VAL GLY ASP LYS GLY CYS PHE LEU ASN ALA SEQRES 10 A 338 PRO ASP MET TYR MET GLU LYS LEU ILE VAL GLY PRO GLY SEQRES 11 A 338 ALA LYS GLY THR ILE ASP LEU ASN LEU PRO LEU ALA ASP SEQRES 12 A 338 ASN LEU ARG ASN VAL ALA ALA ALA LEU GLY LYS PRO LEU SEQRES 13 A 338 SER GLU LEU THR VAL THR ILE LEU ALA LYS PRO ARG HIS SEQRES 14 A 338 ASP ALA VAL ILE ALA GLU MET GLN GLN LEU GLY VAL ARG SEQRES 15 A 338 VAL PHE ALA ILE PRO ASP GLY ASP VAL ALA ALA SER ILE SEQRES 16 A 338 LEU THR CYS MET PRO ASP SER GLU VAL ASP VAL LEU TYR SEQRES 17 A 338 GLY ILE GLY GLY ALA PRO GLU GLY VAL VAL SER ALA ALA SEQRES 18 A 338 VAL ILE ARG ALA LEU ASP GLY ASP MET ASN GLY ARG LEU SEQRES 19 A 338 LEU ALA ARG HIS ASP VAL LYS GLY ASP ASN GLU GLU ASN SEQRES 20 A 338 ARG ARG ILE GLY GLU GLN GLU LEU ALA ARG CYS LYS ALA SEQRES 21 A 338 MET GLY ILE GLU ALA GLY LYS VAL LEU ARG LEU GLY ASP SEQRES 22 A 338 MET ALA ARG SER ASP ASN VAL ILE PHE SER ALA THR GLY SEQRES 23 A 338 ILE THR LYS GLY ASP LEU LEU GLU GLY ILE SER ARG LYS SEQRES 24 A 338 GLY ASN ILE ALA THR THR GLU THR LEU LEU ILE ARG GLY SEQRES 25 A 338 LYS SER ARG THR ILE ARG ARG ILE GLN SER ILE HIS TYR SEQRES 26 A 338 LEU ASP ARG LYS ASP PRO GLU MET GLN VAL HIS ILE LEU HET SO4 A 400 5 HET SO4 A 401 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 HOH *141(H2 O) HELIX 1 1 ARG A 2 GLU A 4 5 3 HELIX 2 2 LEU A 5 ARG A 26 1 22 HELIX 3 3 ASP A 28 ASN A 45 1 18 HELIX 4 4 GLY A 126 LYS A 130 5 5 HELIX 5 5 PRO A 138 LEU A 150 1 13 HELIX 6 6 PRO A 153 GLU A 156 5 4 HELIX 7 7 HIS A 167 LEU A 177 1 11 HELIX 8 8 GLY A 187 MET A 197 1 11 HELIX 9 9 ALA A 211 LEU A 224 1 14 HELIX 10 10 LEU A 269 ALA A 273 1 5 SHEET 1 A 7 THR A 314 TYR A 323 0 SHEET 2 A 7 ILE A 300 ARG A 309 -1 N THR A 305 O ILE A 318 SHEET 3 A 7 VAL A 278 GLY A 284 -1 N ALA A 282 O LEU A 306 SHEET 4 A 7 LEU A 101 ASP A 108 -1 N VAL A 106 O ILE A 279 SHEET 5 A 7 ALA A 79 GLU A 88 -1 N GLU A 88 O LEU A 101 SHEET 6 A 7 ASP A 50 ILE A 55 1 N THR A 52 O ILE A 82 SHEET 7 A 7 LYS A 71 VAL A 72 -1 O VAL A 72 N GLY A 51 SHEET 1 B 3 THR A 314 TYR A 323 0 SHEET 2 B 3 ILE A 300 ARG A 309 -1 N THR A 305 O ILE A 318 SHEET 3 B 3 SER A 295 LYS A 297 -1 N SER A 295 O THR A 302 SHEET 1 C 6 ARG A 180 ILE A 184 0 SHEET 2 C 6 THR A 158 LEU A 162 1 N VAL A 159 O ARG A 180 SHEET 3 C 6 VAL A 204 GLY A 210 1 O VAL A 204 N THR A 160 SHEET 4 C 6 TYR A 119 VAL A 125 -1 N LYS A 122 O GLY A 207 SHEET 5 C 6 ASP A 227 LEU A 233 -1 O ARG A 231 N GLU A 121 SHEET 6 C 6 VAL A 266 ARG A 268 -1 O LEU A 267 N GLY A 230 CISPEP 1 GLY A -1 HIS A 0 0 -15.82 CISPEP 2 GLY A 260 ILE A 261 0 -0.14 SITE 1 AC1 6 HIS A 0 ARG A 2 ARG A 3 GLU A 4 SITE 2 AC1 6 ARG A 309 LYS A 311 SITE 1 AC2 6 ARG A 11 ARG A 309 SER A 312 THR A 314 SITE 2 AC2 6 ARG A 316 HOH A 425 CRYST1 61.453 61.453 171.740 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016273 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016273 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005823 0.00000 MASTER 414 0 2 10 16 0 4 6 0 0 0 26 END