HEADER OXIDOREDUCTASE 14-OCT-02 1N0J TITLE THE STRUCTURE OF HUMAN MITOCHONDRIAL MN3+ SUPEROXIDE DISMUTASE REVEALS TITLE 2 A NOVEL TETRAMERIC INTERFACE OF TWO 4-HELIX BUNDLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [MN]; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: SODASODB KEYWDS FOUR-HELIX BUNDLE, METALLOENZYME, MANGANESE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR G.E.O.BORGSTAHL,H.E.PARGE,J.A.TAINER REVDAT 4 11-OCT-17 1N0J 1 REMARK HELIX REVDAT 3 13-JUL-11 1N0J 1 VERSN REVDAT 2 24-FEB-09 1N0J 1 VERSN REVDAT 1 06-NOV-02 1N0J 0 SPRSDE 06-NOV-02 1N0J 1ABM JRNL AUTH G.E.BORGSTAHL,H.E.PARGE,M.J.HICKEY,W.F.BEYER JR., JRNL AUTH 2 R.A.HALLEWELL,J.A.TAINER JRNL TITL THE STRUCTURE OF HUMAN MITOCHONDRIAL MN3+ SUPEROXIDE JRNL TITL 2 DISMUTASE REVEALS A NOVEL TETRAMERIC INTERFACE OF TWO JRNL TITL 3 4-HELIX BUNDLES JRNL REF CELL(CAMBRIDGE,MASS.) V. 71 107 1992 JRNL REFN ISSN 0092-8674 JRNL PMID 1394426 JRNL DOI 10.1016/0092-8674(92)90270-M REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 20 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 19738 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3146 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 169 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : 3.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1N0J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-OCT-02. REMARK 100 THE DEPOSITION ID IS D_1000017367. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : X-GEN REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19738 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 52.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 600, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 38.06500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.95000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.06500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.95000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 8150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 MET B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O CYS A 196 N LYS A 197 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 2 NE2 HIS A 2 CD2 -0.070 REMARK 500 HIS A 26 NE2 HIS A 26 CD2 -0.066 REMARK 500 HIS A 27 NE2 HIS A 27 CD2 -0.072 REMARK 500 HIS A 30 NE2 HIS A 30 CD2 -0.081 REMARK 500 HIS A 31 NE2 HIS A 31 CD2 -0.067 REMARK 500 ALA A 195 C CYS A 196 N -0.227 REMARK 500 CYS A 196 N CYS A 196 CA -0.295 REMARK 500 CYS A 196 C CYS A 196 O -0.172 REMARK 500 CYS A 196 C LYS A 197 N -0.538 REMARK 500 HIS B 2 NE2 HIS B 2 CD2 -0.082 REMARK 500 HIS B 31 NE2 HIS B 31 CD2 -0.080 REMARK 500 HIS B 71 NE2 HIS B 71 CD2 -0.077 REMARK 500 ALA B 195 C CYS B 196 N -0.164 REMARK 500 CYS B 196 N CYS B 196 CA -0.235 REMARK 500 CYS B 196 C CYS B 196 O 0.146 REMARK 500 CYS B 196 C LYS B 197 N 0.144 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 45 CB - CG - CD1 ANGL. DEV. = -5.3 DEGREES REMARK 500 TRP A 78 CD1 - CG - CD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 TRP A 78 CB - CG - CD1 ANGL. DEV. = -10.0 DEGREES REMARK 500 TRP A 78 CG - CD1 - NE1 ANGL. DEV. = -6.0 DEGREES REMARK 500 TRP A 78 CE2 - CD2 - CG ANGL. DEV. = -6.2 DEGREES REMARK 500 TRP A 78 CG - CD2 - CE3 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 99 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 VAL A 116 CG1 - CB - CG2 ANGL. DEV. = -10.0 DEGREES REMARK 500 TRP A 123 CD1 - CG - CD2 ANGL. DEV. = 5.1 DEGREES REMARK 500 TRP A 125 CD1 - CG - CD2 ANGL. DEV. = 5.1 DEGREES REMARK 500 TRP A 125 CE2 - CD2 - CG ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG A 132 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 HIS A 134 CA - CB - CG ANGL. DEV. = 10.4 DEGREES REMARK 500 ASP A 144 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 TRP A 161 CD1 - CG - CD2 ANGL. DEV. = 5.0 DEGREES REMARK 500 TRP A 161 CE2 - CD2 - CG ANGL. DEV. = -5.2 DEGREES REMARK 500 TYR A 169 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 VAL A 172 CG1 - CB - CG2 ANGL. DEV. = -10.7 DEGREES REMARK 500 ARG A 173 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 TRP A 181 CD1 - CG - CD2 ANGL. DEV. = 4.8 DEGREES REMARK 500 TRP A 181 CB - CG - CD1 ANGL. DEV. = -8.4 DEGREES REMARK 500 TRP A 181 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 TRP A 181 CG - CD2 - CE3 ANGL. DEV. = 7.8 DEGREES REMARK 500 TRP A 186 CD1 - CG - CD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 TRP A 186 CG - CD1 - NE1 ANGL. DEV. = -6.1 DEGREES REMARK 500 TRP A 186 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 ALA A 195 CA - C - N ANGL. DEV. = 16.5 DEGREES REMARK 500 ALA A 195 O - C - N ANGL. DEV. = -15.7 DEGREES REMARK 500 CYS A 196 N - CA - CB ANGL. DEV. = 20.0 DEGREES REMARK 500 CYS A 196 CA - C - N ANGL. DEV. = 14.5 DEGREES REMARK 500 TYR B 9 CB - CG - CD1 ANGL. DEV. = -5.0 DEGREES REMARK 500 MET B 23 CG - SD - CE ANGL. DEV. = -21.4 DEGREES REMARK 500 TYR B 45 CB - CG - CD1 ANGL. DEV. = -5.0 DEGREES REMARK 500 VAL B 54 CG1 - CB - CG2 ANGL. DEV. = -9.7 DEGREES REMARK 500 TRP B 78 CD1 - CG - CD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 TRP B 78 CB - CG - CD1 ANGL. DEV. = -9.3 DEGREES REMARK 500 TRP B 78 CE2 - CD2 - CG ANGL. DEV. = -6.1 DEGREES REMARK 500 TRP B 78 CG - CD2 - CE3 ANGL. DEV. = 6.6 DEGREES REMARK 500 TRP B 123 CD1 - CG - CD2 ANGL. DEV. = 4.9 DEGREES REMARK 500 TRP B 125 CD1 - CG - CD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 TRP B 125 CG - CD1 - NE1 ANGL. DEV. = -6.0 DEGREES REMARK 500 TRP B 161 CD1 - CG - CD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 TRP B 161 CG - CD1 - NE1 ANGL. DEV. = -6.2 DEGREES REMARK 500 TRP B 161 CE2 - CD2 - CG ANGL. DEV. = -4.9 DEGREES REMARK 500 TYR B 169 CB - CG - CD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 TRP B 181 CD1 - CG - CD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 TRP B 181 CE2 - CD2 - CG ANGL. DEV. = -6.8 DEGREES REMARK 500 TRP B 186 CD1 - CG - CD2 ANGL. DEV. = 5.2 DEGREES REMARK 500 TRP B 186 CE2 - CD2 - CG ANGL. DEV. = -5.3 DEGREES REMARK 500 ALA B 195 CA - C - N ANGL. DEV. = 27.1 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 53 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 142 -128.50 48.57 REMARK 500 TYR A 165 -16.18 -140.74 REMARK 500 GLN A 168 -61.10 -94.42 REMARK 500 LYS A 170 -135.39 46.29 REMARK 500 ASN B 142 -113.30 52.18 REMARK 500 TYR B 165 -20.11 -140.91 REMARK 500 LYS B 170 -140.10 43.36 REMARK 500 ASN B 171 2.50 -67.60 REMARK 500 CYS B 196 38.20 -83.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA B 195 CYS B 196 140.77 REMARK 500 CYS B 196 LYS B 197 135.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 166 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 199 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 159 OD1 REMARK 620 2 HOH A 400 O 86.0 REMARK 620 3 HIS A 163 NE2 117.6 92.2 REMARK 620 4 HIS A 74 NE2 102.5 91.7 139.9 REMARK 620 5 HIS A 26 NE2 92.9 178.6 87.6 89.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 199 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 159 OD1 REMARK 620 2 HOH B 401 O 92.4 REMARK 620 3 HIS B 74 NE2 100.7 95.0 REMARK 620 4 HIS B 163 NE2 131.0 87.2 128.2 REMARK 620 5 HIS B 26 NE2 93.4 172.9 79.9 92.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: MNA REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: active site, trigonal bipyramidal manganese REMARK 800 REMARK 800 SITE_IDENTIFIER: MNB REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: active site, trigonal bipyramidal manganese REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 199 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 199 DBREF 1N0J A 1 198 UNP P04179 SODM_HUMAN 25 222 DBREF 1N0J B 1 198 UNP P04179 SODM_HUMAN 25 222 SEQADV 1N0J MET A 0 UNP P04179 EXPRESSION TAG SEQADV 1N0J MET B 0 UNP P04179 EXPRESSION TAG SEQRES 1 A 199 MET LYS HIS SER LEU PRO ASP LEU PRO TYR ASP TYR GLY SEQRES 2 A 199 ALA LEU GLU PRO HIS ILE ASN ALA GLN ILE MET GLN LEU SEQRES 3 A 199 HIS HIS SER LYS HIS HIS ALA ALA TYR VAL ASN ASN LEU SEQRES 4 A 199 ASN VAL THR GLU GLU LYS TYR GLN GLU ALA LEU ALA LYS SEQRES 5 A 199 GLY ASP VAL THR ALA GLN ILE ALA LEU GLN PRO ALA LEU SEQRES 6 A 199 LYS PHE ASN GLY GLY GLY HIS ILE ASN HIS SER ILE PHE SEQRES 7 A 199 TRP THR ASN LEU SER PRO ASN GLY GLY GLY GLU PRO LYS SEQRES 8 A 199 GLY GLU LEU LEU GLU ALA ILE LYS ARG ASP PHE GLY SER SEQRES 9 A 199 PHE ASP LYS PHE LYS GLU LYS LEU THR ALA ALA SER VAL SEQRES 10 A 199 GLY VAL GLN GLY SER GLY TRP GLY TRP LEU GLY PHE ASN SEQRES 11 A 199 LYS GLU ARG GLY HIS LEU GLN ILE ALA ALA CYS PRO ASN SEQRES 12 A 199 GLN ASP PRO LEU GLN GLY THR THR GLY LEU ILE PRO LEU SEQRES 13 A 199 LEU GLY ILE ASP VAL TRP GLU HIS ALA TYR TYR LEU GLN SEQRES 14 A 199 TYR LYS ASN VAL ARG PRO ASP TYR LEU LYS ALA ILE TRP SEQRES 15 A 199 ASN VAL ILE ASN TRP GLU ASN VAL THR GLU ARG TYR MET SEQRES 16 A 199 ALA CYS LYS LYS SEQRES 1 B 199 MET LYS HIS SER LEU PRO ASP LEU PRO TYR ASP TYR GLY SEQRES 2 B 199 ALA LEU GLU PRO HIS ILE ASN ALA GLN ILE MET GLN LEU SEQRES 3 B 199 HIS HIS SER LYS HIS HIS ALA ALA TYR VAL ASN ASN LEU SEQRES 4 B 199 ASN VAL THR GLU GLU LYS TYR GLN GLU ALA LEU ALA LYS SEQRES 5 B 199 GLY ASP VAL THR ALA GLN ILE ALA LEU GLN PRO ALA LEU SEQRES 6 B 199 LYS PHE ASN GLY GLY GLY HIS ILE ASN HIS SER ILE PHE SEQRES 7 B 199 TRP THR ASN LEU SER PRO ASN GLY GLY GLY GLU PRO LYS SEQRES 8 B 199 GLY GLU LEU LEU GLU ALA ILE LYS ARG ASP PHE GLY SER SEQRES 9 B 199 PHE ASP LYS PHE LYS GLU LYS LEU THR ALA ALA SER VAL SEQRES 10 B 199 GLY VAL GLN GLY SER GLY TRP GLY TRP LEU GLY PHE ASN SEQRES 11 B 199 LYS GLU ARG GLY HIS LEU GLN ILE ALA ALA CYS PRO ASN SEQRES 12 B 199 GLN ASP PRO LEU GLN GLY THR THR GLY LEU ILE PRO LEU SEQRES 13 B 199 LEU GLY ILE ASP VAL TRP GLU HIS ALA TYR TYR LEU GLN SEQRES 14 B 199 TYR LYS ASN VAL ARG PRO ASP TYR LEU LYS ALA ILE TRP SEQRES 15 B 199 ASN VAL ILE ASN TRP GLU ASN VAL THR GLU ARG TYR MET SEQRES 16 B 199 ALA CYS LYS LYS HET MN A 199 1 HET MN B 199 1 HETNAM MN MANGANESE (II) ION FORMUL 3 MN 2(MN 2+) FORMUL 5 HOH *169(H2 O) HELIX 1 1 ASP A 10 GLU A 15 5 6 HELIX 2 2 ASN A 19 LYS A 29 1 11 HELIX 3 3 LYS A 29 LYS A 51 1 23 HELIX 4 4 ASP A 53 LEU A 81 1 29 HELIX 5 5 GLY A 91 GLY A 102 1 12 HELIX 6 6 SER A 103 GLY A 117 1 15 HELIX 7 7 PRO A 145 GLY A 151 1 7 HELIX 8 8 TRP A 161 ALA A 164 5 4 HELIX 9 9 TYR A 165 LYS A 170 1 6 HELIX 10 10 VAL A 172 TRP A 181 1 10 HELIX 11 11 ASN A 182 ILE A 184 5 3 HELIX 12 12 ASN A 185 LYS A 197 1 13 HELIX 13 13 ASP B 10 GLU B 15 5 6 HELIX 14 14 ASN B 19 LYS B 29 1 11 HELIX 15 15 LYS B 29 LYS B 51 1 23 HELIX 16 16 ASP B 53 LEU B 60 1 8 HELIX 17 17 LEU B 60 LEU B 81 1 22 HELIX 18 18 GLY B 91 GLY B 102 1 12 HELIX 19 19 SER B 103 GLY B 117 1 15 HELIX 20 20 PRO B 145 GLY B 151 1 7 HELIX 21 21 TRP B 161 ALA B 164 5 4 HELIX 22 22 TYR B 165 LYS B 170 1 6 HELIX 23 23 VAL B 172 TRP B 181 1 10 HELIX 24 24 ASN B 185 CYS B 196 1 12 SHEET 1 A 3 HIS A 134 PRO A 141 0 SHEET 2 A 3 GLY A 122 ASN A 129 -1 N ASN A 129 O HIS A 134 SHEET 3 A 3 ILE A 153 ASP A 159 -1 O LEU A 156 N LEU A 126 SHEET 1 B 3 HIS B 134 PRO B 141 0 SHEET 2 B 3 GLY B 122 ASN B 129 -1 N TRP B 125 O ALA B 138 SHEET 3 B 3 ILE B 153 ASP B 159 -1 O LEU B 156 N LEU B 126 LINK OD1 ASP A 159 MN MN A 199 1555 1555 1.94 LINK OD1 ASP B 159 MN MN B 199 1555 1555 1.94 LINK MN MN A 199 O HOH A 400 1555 1555 2.02 LINK MN MN B 199 O HOH B 401 1555 1555 2.01 LINK MN MN A 199 NE2 HIS A 163 1555 1555 2.10 LINK MN MN A 199 NE2 HIS A 74 1555 1555 2.08 LINK MN MN A 199 NE2 HIS A 26 1555 1555 2.10 LINK MN MN B 199 NE2 HIS B 74 1555 1555 2.11 LINK MN MN B 199 NE2 HIS B 163 1555 1555 2.10 LINK MN MN B 199 NE2 HIS B 26 1555 1555 2.09 CISPEP 1 GLU A 15 PRO A 16 0 3.86 CISPEP 2 GLU B 15 PRO B 16 0 -10.53 SITE 1 MNA 5 HIS A 26 HIS A 74 ASP A 159 HIS A 163 SITE 2 MNA 5 HOH A 400 SITE 1 MNB 5 HIS B 26 HIS B 74 ASP B 159 HIS B 163 SITE 2 MNB 5 HOH B 401 SITE 1 AC1 5 HIS A 26 HIS A 74 ASP A 159 HIS A 163 SITE 2 AC1 5 HOH A 400 SITE 1 AC2 5 HIS B 26 HIS B 74 ASP B 159 HIS B 163 SITE 2 AC2 5 HOH B 401 CRYST1 76.130 79.900 68.050 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013135 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012516 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014695 0.00000 MTRIX1 1 0.886100 -0.463500 0.006700 -0.32100 1 MTRIX2 1 -0.463500 -0.886100 0.002200 -0.26000 1 MTRIX3 1 0.004900 -0.005100 -1.000000 101.43300 1 MASTER 426 0 2 24 6 0 8 9 0 0 0 32 END