HEADER TRANSCRIPTION 09-OCT-02 1MZN TITLE CRYSTAL STRUCTURE AT 1.9 ANGSTROEMS RESOLUTION OF THE HOMODIMER OF TITLE 2 HUMAN RXR ALPHA LIGAND BINDING DOMAIN BOUND TO THE SYNTHETIC AGONIST TITLE 3 COMPOUND BMS 649 AND A COACTIVATOR PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RXR RETINOID X RECEPTOR; COMPND 3 CHAIN: A, C, E, G; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN(RESIDUES 223-462); COMPND 5 SYNONYM: RETINOIC ACID RECEPTOR RXR-ALPHA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 2; COMPND 9 CHAIN: B, D, F, H; COMPND 10 FRAGMENT: NR BOX; COMPND 11 SYNONYM: GRIP1; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-15B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 OTHER_DETAILS: CHEMICAL SYNTHESIS, THIS IS THE SYNTHETIC PEPTIDE SOURCE 15 FRAGMENT FROM GRIP-1 COACTIVATOR KEYWDS TRANSCRIPTION, NUCLEAR RECEPTOR, RETINOIC ACID RECEPTORS, AGONIST EXPDTA X-RAY DIFFRACTION AUTHOR P.F.EGEA,A.MITSCHLER,D.MORAS REVDAT 3 04-AUG-21 1MZN 1 SOURCE REMARK REVDAT 2 24-FEB-09 1MZN 1 VERSN REVDAT 1 23-OCT-02 1MZN 0 JRNL AUTH P.F.EGEA,A.MITSCHLER,D.MORAS JRNL TITL MOLECULAR RECOGNITION OF AGONIST LIGANDS BY RXRS JRNL REF MOL.ENDOCRINOL. V. 16 987 2002 JRNL REFN ISSN 0888-8809 JRNL PMID 11981034 JRNL DOI 10.1210/ME.16.5.987 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.F.EGEA,A.MITSCHLER,N.ROCHEL,M.RUFF,P.CHAMBON,D.MORAS REMARK 1 TITL CRYSTAL STRUCTURE OF THE HUMAN RXRALPHA LIGAND-BINDING REMARK 1 TITL 2 DOMAIN BOUND TO ITS NATURAL LIGAND: 9-CIS RETINOIC ACID REMARK 1 REF EMBO J. V. 19 2592 2000 REMARK 1 REFN ISSN 0261-4189 REMARK 1 DOI 10.1093/EMBOJ/19.11.2592 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 79918 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.500 REMARK 3 FREE R VALUE TEST SET COUNT : 5850 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7242 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 112 REMARK 3 SOLVENT ATOMS : 823 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MZN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-OCT-02. REMARK 100 THE DEPOSITION ID IS D_1000017335. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 191828 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.17700 REMARK 200 R SYM FOR SHELL (I) : 0.12400 REMARK 200 FOR SHELL : 7.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ID 1FBY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, NACL, PIPES, BISTRIS, REMARK 280 GLYCEROL, PH 7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 223 REMARK 465 SER A 224 REMARK 465 SER A 225 REMARK 465 ALA A 226 REMARK 465 MET A 254 REMARK 465 GLY A 255 REMARK 465 LEU A 256 REMARK 465 ASN A 257 REMARK 465 PRO A 258 REMARK 465 SER A 259 REMARK 465 SER A 260 REMARK 465 PRO A 261 REMARK 465 HIS A 459 REMARK 465 GLN A 460 REMARK 465 MET A 461 REMARK 465 THR A 462 REMARK 465 SER B 482 REMARK 465 SER B 483 REMARK 465 THR C 1223 REMARK 465 SER C 1224 REMARK 465 SER C 1225 REMARK 465 ALA C 1226 REMARK 465 ASN C 1227 REMARK 465 GLU C 1228 REMARK 465 LYS C 1245 REMARK 465 THR C 1246 REMARK 465 GLU C 1247 REMARK 465 THR C 1248 REMARK 465 TYR C 1249 REMARK 465 VAL C 1250 REMARK 465 GLU C 1251 REMARK 465 ALA C 1252 REMARK 465 ASN C 1253 REMARK 465 MET C 1254 REMARK 465 GLY C 1255 REMARK 465 LEU C 1256 REMARK 465 ASN C 1257 REMARK 465 PRO C 1258 REMARK 465 SER C 1259 REMARK 465 SER C 1260 REMARK 465 PRO C 1261 REMARK 465 ASN C 1262 REMARK 465 HIS C 1459 REMARK 465 GLN C 1460 REMARK 465 MET C 1461 REMARK 465 THR C 1462 REMARK 465 SER D 1482 REMARK 465 SER D 1483 REMARK 465 THR E 2223 REMARK 465 SER E 2224 REMARK 465 SER E 2225 REMARK 465 ALA E 2226 REMARK 465 MET E 2254 REMARK 465 GLY E 2255 REMARK 465 LEU E 2256 REMARK 465 ASN E 2257 REMARK 465 PRO E 2258 REMARK 465 SER E 2259 REMARK 465 SER E 2260 REMARK 465 PRO E 2261 REMARK 465 HIS E 2459 REMARK 465 GLN E 2460 REMARK 465 MET E 2461 REMARK 465 THR E 2462 REMARK 465 SER F 2482 REMARK 465 SER F 2483 REMARK 465 THR G 3223 REMARK 465 SER G 3224 REMARK 465 SER G 3225 REMARK 465 ALA G 3226 REMARK 465 ASN G 3227 REMARK 465 GLU G 3228 REMARK 465 LYS G 3245 REMARK 465 THR G 3246 REMARK 465 GLU G 3247 REMARK 465 THR G 3248 REMARK 465 TYR G 3249 REMARK 465 VAL G 3250 REMARK 465 GLU G 3251 REMARK 465 ALA G 3252 REMARK 465 ASN G 3253 REMARK 465 MET G 3254 REMARK 465 GLY G 3255 REMARK 465 LEU G 3256 REMARK 465 ASN G 3257 REMARK 465 PRO G 3258 REMARK 465 SER G 3259 REMARK 465 SER G 3260 REMARK 465 PRO G 3261 REMARK 465 ASN G 3262 REMARK 465 HIS G 3459 REMARK 465 GLN G 3460 REMARK 465 MET G 3461 REMARK 465 THR G 3462 REMARK 465 SER H 3482 REMARK 465 SER H 3483 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 227 CG OD1 ND2 REMARK 470 GLU A 228 CG CD OE1 OE2 REMARK 470 GLU A 251 CG CD OE1 OE2 REMARK 470 ASN A 253 CG OD1 ND2 REMARK 470 ASN A 262 CG OD1 ND2 REMARK 470 ASN E2227 CG OD1 ND2 REMARK 470 GLU E2228 CG CD OE1 OE2 REMARK 470 GLU E2251 CG CD OE1 OE2 REMARK 470 ASN E2253 CG OD1 ND2 REMARK 470 ASN E2262 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG C 1234 O HOH C 4743 2.16 REMARK 500 O ARG F 2477 CG ASP F 2481 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 252 -95.83 155.90 REMARK 500 HIS A 288 -8.21 78.89 REMARK 500 ALA A 457 155.95 -39.44 REMARK 500 HIS C1288 -7.25 74.27 REMARK 500 LEU C1353 -70.82 -116.82 REMARK 500 GLN D1480 -74.93 -60.92 REMARK 500 HIS E2288 -8.04 79.31 REMARK 500 ASP E2444 -174.26 -69.97 REMARK 500 THR E2445 106.59 67.30 REMARK 500 HIS G3288 -6.59 75.31 REMARK 500 LEU G3353 -70.36 -116.26 REMARK 500 GLN G3411 77.83 -117.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR G3397 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BM6 A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BM6 C 1200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BM6 E 2200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BM6 G 3200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FBY RELATED DB: PDB REMARK 900 1FBY CONTAINS THE HUMAN RXR ALPHA LIGAND BINDING DOMAIN BOUND TO 9- REMARK 900 CIS RETINOIC ACID REMARK 900 RELATED ID: 1MVC RELATED DB: PDB REMARK 900 1MVC CONTAINS THE SAME PROTEIN COMPLEXED WITH THE SYNTHETIC AGONIST REMARK 900 COMPOUND BMS 649 REMARK 900 RELATED ID: 1MV9 RELATED DB: PDB REMARK 900 1MV9 CONTAINS THE SAME PROTEIN COMPLEXED WITH A NATURAL AGONSIT THE REMARK 900 EICOSANOID DOCOSA HEXAENOIC ACID DBREF 1MZN A 223 462 UNP P19793 RXRA_HUMAN 223 462 DBREF 1MZN C 1223 1462 UNP P19793 RXRA_HUMAN 223 462 DBREF 1MZN E 2223 2462 UNP P19793 RXRA_HUMAN 223 462 DBREF 1MZN G 3223 3462 UNP P19793 RXRA_HUMAN 223 462 DBREF 1MZN B 471 483 UNP Q15596 NCOA2_HUMAN 686 698 DBREF 1MZN D 1471 1483 UNP Q15596 NCOA2_HUMAN 686 698 DBREF 1MZN F 2471 2483 UNP Q15596 NCOA2_HUMAN 686 698 DBREF 1MZN H 3471 3483 UNP Q15596 NCOA2_HUMAN 686 698 SEQRES 1 A 240 THR SER SER ALA ASN GLU ASP MET PRO VAL GLU ARG ILE SEQRES 2 A 240 LEU GLU ALA GLU LEU ALA VAL GLU PRO LYS THR GLU THR SEQRES 3 A 240 TYR VAL GLU ALA ASN MET GLY LEU ASN PRO SER SER PRO SEQRES 4 A 240 ASN ASP PRO VAL THR ASN ILE CYS GLN ALA ALA ASP LYS SEQRES 5 A 240 GLN LEU PHE THR LEU VAL GLU TRP ALA LYS ARG ILE PRO SEQRES 6 A 240 HIS PHE SER GLU LEU PRO LEU ASP ASP GLN VAL ILE LEU SEQRES 7 A 240 LEU ARG ALA GLY TRP ASN GLU LEU LEU ILE ALA SER PHE SEQRES 8 A 240 SER HIS ARG SER ILE ALA VAL LYS ASP GLY ILE LEU LEU SEQRES 9 A 240 ALA THR GLY LEU HIS VAL HIS ARG ASN SER ALA HIS SER SEQRES 10 A 240 ALA GLY VAL GLY ALA ILE PHE ASP ARG VAL LEU THR GLU SEQRES 11 A 240 LEU VAL SER LYS MET ARG ASP MET GLN MET ASP LYS THR SEQRES 12 A 240 GLU LEU GLY CYS LEU ARG ALA ILE VAL LEU PHE ASN PRO SEQRES 13 A 240 ASP SER LYS GLY LEU SER ASN PRO ALA GLU VAL GLU ALA SEQRES 14 A 240 LEU ARG GLU LYS VAL TYR ALA SER LEU GLU ALA TYR CYS SEQRES 15 A 240 LYS HIS LYS TYR PRO GLU GLN PRO GLY ARG PHE ALA LYS SEQRES 16 A 240 LEU LEU LEU ARG LEU PRO ALA LEU ARG SER ILE GLY LEU SEQRES 17 A 240 LYS CYS LEU GLU HIS LEU PHE PHE PHE LYS LEU ILE GLY SEQRES 18 A 240 ASP THR PRO ILE ASP THR PHE LEU MET GLU MET LEU GLU SEQRES 19 A 240 ALA PRO HIS GLN MET THR SEQRES 1 B 13 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER SEQRES 1 C 240 THR SER SER ALA ASN GLU ASP MET PRO VAL GLU ARG ILE SEQRES 2 C 240 LEU GLU ALA GLU LEU ALA VAL GLU PRO LYS THR GLU THR SEQRES 3 C 240 TYR VAL GLU ALA ASN MET GLY LEU ASN PRO SER SER PRO SEQRES 4 C 240 ASN ASP PRO VAL THR ASN ILE CYS GLN ALA ALA ASP LYS SEQRES 5 C 240 GLN LEU PHE THR LEU VAL GLU TRP ALA LYS ARG ILE PRO SEQRES 6 C 240 HIS PHE SER GLU LEU PRO LEU ASP ASP GLN VAL ILE LEU SEQRES 7 C 240 LEU ARG ALA GLY TRP ASN GLU LEU LEU ILE ALA SER PHE SEQRES 8 C 240 SER HIS ARG SER ILE ALA VAL LYS ASP GLY ILE LEU LEU SEQRES 9 C 240 ALA THR GLY LEU HIS VAL HIS ARG ASN SER ALA HIS SER SEQRES 10 C 240 ALA GLY VAL GLY ALA ILE PHE ASP ARG VAL LEU THR GLU SEQRES 11 C 240 LEU VAL SER LYS MET ARG ASP MET GLN MET ASP LYS THR SEQRES 12 C 240 GLU LEU GLY CYS LEU ARG ALA ILE VAL LEU PHE ASN PRO SEQRES 13 C 240 ASP SER LYS GLY LEU SER ASN PRO ALA GLU VAL GLU ALA SEQRES 14 C 240 LEU ARG GLU LYS VAL TYR ALA SER LEU GLU ALA TYR CYS SEQRES 15 C 240 LYS HIS LYS TYR PRO GLU GLN PRO GLY ARG PHE ALA LYS SEQRES 16 C 240 LEU LEU LEU ARG LEU PRO ALA LEU ARG SER ILE GLY LEU SEQRES 17 C 240 LYS CYS LEU GLU HIS LEU PHE PHE PHE LYS LEU ILE GLY SEQRES 18 C 240 ASP THR PRO ILE ASP THR PHE LEU MET GLU MET LEU GLU SEQRES 19 C 240 ALA PRO HIS GLN MET THR SEQRES 1 D 13 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER SEQRES 1 E 240 THR SER SER ALA ASN GLU ASP MET PRO VAL GLU ARG ILE SEQRES 2 E 240 LEU GLU ALA GLU LEU ALA VAL GLU PRO LYS THR GLU THR SEQRES 3 E 240 TYR VAL GLU ALA ASN MET GLY LEU ASN PRO SER SER PRO SEQRES 4 E 240 ASN ASP PRO VAL THR ASN ILE CYS GLN ALA ALA ASP LYS SEQRES 5 E 240 GLN LEU PHE THR LEU VAL GLU TRP ALA LYS ARG ILE PRO SEQRES 6 E 240 HIS PHE SER GLU LEU PRO LEU ASP ASP GLN VAL ILE LEU SEQRES 7 E 240 LEU ARG ALA GLY TRP ASN GLU LEU LEU ILE ALA SER PHE SEQRES 8 E 240 SER HIS ARG SER ILE ALA VAL LYS ASP GLY ILE LEU LEU SEQRES 9 E 240 ALA THR GLY LEU HIS VAL HIS ARG ASN SER ALA HIS SER SEQRES 10 E 240 ALA GLY VAL GLY ALA ILE PHE ASP ARG VAL LEU THR GLU SEQRES 11 E 240 LEU VAL SER LYS MET ARG ASP MET GLN MET ASP LYS THR SEQRES 12 E 240 GLU LEU GLY CYS LEU ARG ALA ILE VAL LEU PHE ASN PRO SEQRES 13 E 240 ASP SER LYS GLY LEU SER ASN PRO ALA GLU VAL GLU ALA SEQRES 14 E 240 LEU ARG GLU LYS VAL TYR ALA SER LEU GLU ALA TYR CYS SEQRES 15 E 240 LYS HIS LYS TYR PRO GLU GLN PRO GLY ARG PHE ALA LYS SEQRES 16 E 240 LEU LEU LEU ARG LEU PRO ALA LEU ARG SER ILE GLY LEU SEQRES 17 E 240 LYS CYS LEU GLU HIS LEU PHE PHE PHE LYS LEU ILE GLY SEQRES 18 E 240 ASP THR PRO ILE ASP THR PHE LEU MET GLU MET LEU GLU SEQRES 19 E 240 ALA PRO HIS GLN MET THR SEQRES 1 F 13 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER SEQRES 1 G 240 THR SER SER ALA ASN GLU ASP MET PRO VAL GLU ARG ILE SEQRES 2 G 240 LEU GLU ALA GLU LEU ALA VAL GLU PRO LYS THR GLU THR SEQRES 3 G 240 TYR VAL GLU ALA ASN MET GLY LEU ASN PRO SER SER PRO SEQRES 4 G 240 ASN ASP PRO VAL THR ASN ILE CYS GLN ALA ALA ASP LYS SEQRES 5 G 240 GLN LEU PHE THR LEU VAL GLU TRP ALA LYS ARG ILE PRO SEQRES 6 G 240 HIS PHE SER GLU LEU PRO LEU ASP ASP GLN VAL ILE LEU SEQRES 7 G 240 LEU ARG ALA GLY TRP ASN GLU LEU LEU ILE ALA SER PHE SEQRES 8 G 240 SER HIS ARG SER ILE ALA VAL LYS ASP GLY ILE LEU LEU SEQRES 9 G 240 ALA THR GLY LEU HIS VAL HIS ARG ASN SER ALA HIS SER SEQRES 10 G 240 ALA GLY VAL GLY ALA ILE PHE ASP ARG VAL LEU THR GLU SEQRES 11 G 240 LEU VAL SER LYS MET ARG ASP MET GLN MET ASP LYS THR SEQRES 12 G 240 GLU LEU GLY CYS LEU ARG ALA ILE VAL LEU PHE ASN PRO SEQRES 13 G 240 ASP SER LYS GLY LEU SER ASN PRO ALA GLU VAL GLU ALA SEQRES 14 G 240 LEU ARG GLU LYS VAL TYR ALA SER LEU GLU ALA TYR CYS SEQRES 15 G 240 LYS HIS LYS TYR PRO GLU GLN PRO GLY ARG PHE ALA LYS SEQRES 16 G 240 LEU LEU LEU ARG LEU PRO ALA LEU ARG SER ILE GLY LEU SEQRES 17 G 240 LYS CYS LEU GLU HIS LEU PHE PHE PHE LYS LEU ILE GLY SEQRES 18 G 240 ASP THR PRO ILE ASP THR PHE LEU MET GLU MET LEU GLU SEQRES 19 G 240 ALA PRO HIS GLN MET THR SEQRES 1 H 13 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER HET BM6 A 200 28 HET BM6 C1200 28 HET BM6 E2200 28 HET BM6 G3200 28 HETNAM BM6 4-[2-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO- HETNAM 2 BM6 NAPHTHALEN-2-YL)-[1,3]DIOXOLAN-2-YL]-BENZOIC ACID HETSYN BM6 BMS649 FORMUL 9 BM6 4(C24 H27 O4 1-) FORMUL 13 HOH *823(H2 O) HELIX 1 1 PRO A 231 VAL A 242 1 12 HELIX 2 2 LYS A 245 GLU A 251 1 7 HELIX 3 3 ASP A 263 ARG A 285 1 23 HELIX 4 4 HIS A 288 LEU A 292 5 5 HELIX 5 5 PRO A 293 SER A 317 1 25 HELIX 6 6 ILE A 318 VAL A 320 5 3 HELIX 7 7 HIS A 333 ALA A 340 1 8 HELIX 8 8 VAL A 342 LEU A 353 1 12 HELIX 9 9 LEU A 353 GLN A 361 1 9 HELIX 10 10 ASP A 363 PHE A 376 1 14 HELIX 11 11 ASN A 385 TYR A 408 1 24 HELIX 12 12 GLY A 413 LEU A 420 1 8 HELIX 13 13 ARG A 421 GLY A 443 1 23 HELIX 14 14 ASP A 448 GLU A 456 1 9 HELIX 15 15 HIS B 472 ASP B 481 1 10 HELIX 16 16 PRO C 1231 GLU C 1243 1 13 HELIX 17 17 ASP C 1263 ILE C 1286 1 24 HELIX 18 18 HIS C 1288 LEU C 1292 5 5 HELIX 19 19 PRO C 1293 SER C 1317 1 25 HELIX 20 20 ARG C 1334 ALA C 1340 1 7 HELIX 21 21 VAL C 1342 LEU C 1353 1 12 HELIX 22 22 LEU C 1353 MET C 1360 1 8 HELIX 23 23 ASP C 1363 PHE C 1376 1 14 HELIX 24 24 ASN C 1385 TYR C 1408 1 24 HELIX 25 25 GLY C 1413 LEU C 1420 1 8 HELIX 26 26 ARG C 1421 GLY C 1443 1 23 HELIX 27 27 ASP C 1448 LEU C 1455 1 8 HELIX 28 28 HIS D 1472 ASP D 1481 1 10 HELIX 29 29 PRO E 2231 VAL E 2242 1 12 HELIX 30 30 LYS E 2245 ASN E 2253 1 9 HELIX 31 31 ASP E 2263 ARG E 2285 1 23 HELIX 32 32 HIS E 2288 LEU E 2292 5 5 HELIX 33 33 PRO E 2293 SER E 2317 1 25 HELIX 34 34 ILE E 2318 VAL E 2320 5 3 HELIX 35 35 HIS E 2333 ALA E 2340 1 8 HELIX 36 36 VAL E 2342 LEU E 2353 1 12 HELIX 37 37 LEU E 2353 GLN E 2361 1 9 HELIX 38 38 ASP E 2363 PHE E 2376 1 14 HELIX 39 39 ASN E 2385 TYR E 2408 1 24 HELIX 40 40 GLY E 2413 LEU E 2420 1 8 HELIX 41 41 ARG E 2421 GLY E 2443 1 23 HELIX 42 42 ASP E 2448 GLU E 2456 1 9 HELIX 43 43 HIS F 2472 ASP F 2481 1 10 HELIX 44 44 PRO G 3231 GLU G 3243 1 13 HELIX 45 45 ASP G 3263 ILE G 3286 1 24 HELIX 46 46 PRO G 3293 SER G 3317 1 25 HELIX 47 47 ARG G 3334 GLY G 3341 1 8 HELIX 48 48 VAL G 3342 LEU G 3353 1 12 HELIX 49 49 LEU G 3353 MET G 3360 1 8 HELIX 50 50 ASP G 3363 PHE G 3376 1 14 HELIX 51 51 ASN G 3385 TYR G 3408 1 24 HELIX 52 52 GLY G 3413 LEU G 3420 1 8 HELIX 53 53 ARG G 3421 GLY G 3443 1 23 HELIX 54 54 ASP G 3448 GLU G 3456 1 9 HELIX 55 55 HIS H 3472 ASP H 3481 1 10 SHEET 1 A 2 ILE A 324 LEU A 325 0 SHEET 2 A 2 HIS A 331 VAL A 332 -1 O VAL A 332 N ILE A 324 SHEET 1 B 2 GLY C1323 LEU C1325 0 SHEET 2 B 2 HIS C1331 HIS C1333 -1 O VAL C1332 N ILE C1324 SHEET 1 C 2 ILE E2324 LEU E2325 0 SHEET 2 C 2 HIS E2331 VAL E2332 -1 O VAL E2332 N ILE E2324 SHEET 1 D 2 GLY G3323 LEU G3325 0 SHEET 2 D 2 HIS G3331 HIS G3333 -1 O VAL G3332 N ILE G3324 SITE 1 AC1 14 ILE A 268 ALA A 271 ALA A 272 GLN A 275 SITE 2 AC1 14 ASN A 306 LEU A 309 ILE A 310 PHE A 313 SITE 3 AC1 14 ARG A 316 LEU A 326 ALA A 327 CYS A 432 SITE 4 AC1 14 HIS A 435 HOH A4020 SITE 1 AC2 15 ILE C1268 ALA C1271 ALA C1272 GLN C1275 SITE 2 AC2 15 ASN C1306 LEU C1309 ILE C1310 PHE C1313 SITE 3 AC2 15 ARG C1316 LEU C1326 ALA C1327 CYS C1432 SITE 4 AC2 15 HIS C1435 PHE C1439 HOH C4076 SITE 1 AC3 14 ILE E2268 ALA E2271 ALA E2272 GLN E2275 SITE 2 AC3 14 ASN E2306 LEU E2309 ILE E2310 PHE E2313 SITE 3 AC3 14 ARG E2316 LEU E2326 ALA E2327 CYS E2432 SITE 4 AC3 14 HIS E2435 HOH E4010 SITE 1 AC4 14 ILE G3268 ALA G3271 ALA G3272 GLN G3275 SITE 2 AC4 14 ASN G3306 LEU G3309 ILE G3310 PHE G3313 SITE 3 AC4 14 ARG G3316 LEU G3326 ALA G3327 CYS G3432 SITE 4 AC4 14 HIS G3435 HOH G4057 CRYST1 47.119 64.694 94.784 109.97 92.87 89.99 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021223 -0.000004 0.001130 0.00000 SCALE2 0.000000 0.015457 0.005624 0.00000 SCALE3 0.000000 0.000000 0.011241 0.00000 MASTER 414 0 4 55 8 0 16 6 0 0 0 80 END