HEADER ENDOCYTOSIS/EXOCYTOSIS 24-SEP-02 1MUZ TITLE NMR STRUCTURE OF THE TUMOR SUPPRESSOR BIN1: ALTERNATIVE TITLE 2 SPLICING IN MELANOMA AND INTERACTION WITH C-MYC COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYC BOX DEPENDENT INTERACTING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 513-593; COMPND 5 SYNONYM: BIN1, BRIDGING INTEGRATOR 1, AMPHIPHYSIN-LIKE COMPND 6 PROTEIN, AMPHIPHYSIN II, BOX-DEPENDENT MYC-INTERACTING COMPND 7 PROTEIN-1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS TUMOR SUPPRESSOR, ENDOCYTOSIS/EXOCYTOSIS COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.PINEDA-LUCENA,C.H.ARROWSMITH REVDAT 2 24-FEB-09 1MUZ 1 VERSN REVDAT 1 30-SEP-03 1MUZ 0 JRNL AUTH A.PINEDA-LUCENA,C.S.HO,D.Y.MAO,Y.SHENG,R.C.LAISTER, JRNL AUTH 2 R.MUHANDIRAM,Y.LU,B.T.SEET,S.KATZ,T.SZYPERSKI, JRNL AUTH 3 L.Z.PENN,C.H.ARROWSMITH JRNL TITL A STRUCTURE-BASED MODEL OF THE C-MYC/BIN1 PROTEIN JRNL TITL 2 INTERACTION SHOWS ALTERNATIVE SPLICING OF BIN1 AND JRNL TITL 3 C-MYC PHOSPHORYLATION ARE KEY BINDING DETERMINANTS. JRNL REF J.MOL.BIOL. V. 351 182 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 15992821 JRNL DOI 10.1016/J.JMB.2005.05.046 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5 REMARK 3 AUTHORS : GUNTERT ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MUZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-SEP-02. REMARK 100 THE RCSB ID CODE IS RCSB017203. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 300E-3 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5 MM BIN1(402-482) U-15N, REMARK 210 13C 25 MM SODIUM PHOSPHATE REMARK 210 BUFFER, 150 MM NACL, 1 MM DTT, REMARK 210 95% H2O, 5% D2O PH=6.5 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.1, DYANA 1.5, XEASY REMARK 210 1.3.14 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 3D REMARK 210 HETERONUCLEAR NMR TECHNIQUES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 410 151.75 -36.99 REMARK 500 1 MET A 411 -72.94 -110.66 REMARK 500 1 ASP A 426 45.14 -171.89 REMARK 500 1 ALA A 432 97.49 -37.53 REMARK 500 1 PHE A 441 -172.42 -59.75 REMARK 500 2 PHE A 410 149.68 -36.87 REMARK 500 2 MET A 411 -69.88 -109.59 REMARK 500 2 ASP A 426 46.73 -172.16 REMARK 500 2 ALA A 432 100.23 -39.90 REMARK 500 2 PHE A 441 -174.20 -61.34 REMARK 500 2 LYS A 465 52.09 -148.81 REMARK 500 3 ARG A 403 173.39 -56.63 REMARK 500 3 PHE A 410 152.18 -36.78 REMARK 500 3 ASP A 426 56.62 -174.49 REMARK 500 3 ALA A 432 97.17 -37.74 REMARK 500 3 PHE A 441 -171.81 -58.80 REMARK 500 3 ASN A 443 148.39 -176.09 REMARK 500 3 LYS A 465 49.16 -142.75 REMARK 500 4 PHE A 410 152.84 -36.87 REMARK 500 4 MET A 411 -72.53 -110.23 REMARK 500 4 ASP A 426 47.40 -165.32 REMARK 500 4 ALA A 432 97.64 -40.28 REMARK 500 4 PHE A 441 -173.15 -58.90 REMARK 500 4 LYS A 465 55.60 -155.82 REMARK 500 5 PHE A 410 151.63 -36.56 REMARK 500 5 MET A 411 -70.07 -111.79 REMARK 500 5 ASP A 426 46.28 -172.26 REMARK 500 5 ALA A 432 97.67 -38.24 REMARK 500 5 PHE A 441 -176.39 -58.74 REMARK 500 5 LYS A 465 49.32 -147.56 REMARK 500 6 PHE A 410 154.62 -36.47 REMARK 500 6 ASP A 426 44.96 -171.37 REMARK 500 6 ALA A 432 100.87 -39.06 REMARK 500 6 PHE A 441 -172.95 -56.33 REMARK 500 6 ASN A 443 148.04 179.52 REMARK 500 7 ARG A 403 165.39 -44.11 REMARK 500 7 PHE A 410 151.60 -36.86 REMARK 500 7 MET A 411 -71.86 -110.96 REMARK 500 7 ASP A 426 62.03 178.11 REMARK 500 7 ALA A 432 101.01 -36.81 REMARK 500 7 PHE A 441 -175.31 -59.16 REMARK 500 8 PHE A 410 153.27 -37.07 REMARK 500 8 MET A 411 -72.35 -113.93 REMARK 500 8 ASP A 426 45.36 -161.18 REMARK 500 8 ALA A 432 98.71 -36.42 REMARK 500 8 PHE A 441 -172.28 -57.05 REMARK 500 8 ASN A 443 147.94 179.01 REMARK 500 8 LYS A 465 52.10 -151.50 REMARK 500 9 PHE A 410 153.27 -36.45 REMARK 500 9 ASP A 426 42.85 -156.44 REMARK 500 9 ALA A 432 98.19 -36.07 REMARK 500 9 PHE A 441 -172.58 -58.00 REMARK 500 9 ASN A 443 148.67 -172.89 REMARK 500 9 LYS A 465 51.77 -141.89 REMARK 500 10 LEU A 404 -39.73 -130.64 REMARK 500 10 PHE A 410 151.62 -36.29 REMARK 500 10 MET A 411 -71.58 -110.97 REMARK 500 10 ASP A 426 41.39 -160.73 REMARK 500 10 ALA A 432 98.04 -39.94 REMARK 500 10 PHE A 441 -175.77 -61.17 REMARK 500 10 LYS A 465 43.05 -146.27 REMARK 500 11 ARG A 403 -177.19 -52.35 REMARK 500 11 PHE A 410 152.72 -36.82 REMARK 500 11 ASP A 426 39.38 -174.87 REMARK 500 11 ALA A 432 104.67 -31.90 REMARK 500 11 PHE A 441 -172.81 -58.57 REMARK 500 11 LYS A 465 50.77 -160.03 REMARK 500 12 PHE A 410 151.83 -36.36 REMARK 500 12 MET A 411 -71.41 -112.37 REMARK 500 12 ASP A 426 61.32 178.60 REMARK 500 12 ALA A 432 101.92 -37.44 REMARK 500 12 PHE A 441 -172.97 -58.38 REMARK 500 13 PHE A 410 150.96 -36.63 REMARK 500 13 MET A 411 -71.11 -109.49 REMARK 500 13 ASP A 426 52.38 -173.60 REMARK 500 13 ALA A 432 100.12 -37.40 REMARK 500 13 PHE A 441 -171.62 -60.40 REMARK 500 13 LYS A 465 51.80 -159.95 REMARK 500 14 PHE A 410 148.67 -36.42 REMARK 500 14 ASP A 426 44.57 -157.00 REMARK 500 14 ALA A 432 102.73 -34.67 REMARK 500 14 PHE A 441 -173.67 -59.71 REMARK 500 14 LYS A 465 42.01 -159.60 REMARK 500 15 ARG A 403 -170.76 -67.40 REMARK 500 15 PHE A 410 147.33 -36.24 REMARK 500 15 MET A 411 -68.78 -107.24 REMARK 500 15 ASP A 426 41.92 -169.97 REMARK 500 15 ALA A 432 95.15 -41.79 REMARK 500 15 PHE A 441 -172.01 -59.48 REMARK 500 15 LYS A 465 54.71 -146.69 REMARK 500 16 PHE A 410 146.82 -36.36 REMARK 500 16 MET A 411 -66.76 -107.06 REMARK 500 16 ASP A 426 37.72 -169.89 REMARK 500 16 ALA A 432 101.86 -38.59 REMARK 500 16 PHE A 441 -175.13 -59.46 REMARK 500 16 LYS A 465 48.12 -155.28 REMARK 500 17 ARG A 403 -170.14 -61.23 REMARK 500 17 PHE A 410 154.99 -36.60 REMARK 500 17 MET A 411 -75.37 -113.08 REMARK 500 17 ASP A 426 39.79 -173.77 REMARK 500 17 ALA A 432 106.37 -34.91 REMARK 500 17 PHE A 441 -171.83 -59.94 REMARK 500 17 ASN A 443 146.91 -172.64 REMARK 500 17 LYS A 465 50.85 -152.72 REMARK 500 18 ARG A 403 -171.46 -68.33 REMARK 500 18 PHE A 410 148.93 -36.84 REMARK 500 18 MET A 411 -68.29 -109.39 REMARK 500 18 ASP A 426 61.41 -178.80 REMARK 500 18 ALA A 432 101.37 -35.09 REMARK 500 18 PHE A 441 -172.17 -60.43 REMARK 500 18 LYS A 465 55.06 -151.59 REMARK 500 19 PHE A 410 150.57 -36.66 REMARK 500 19 MET A 411 -71.83 -109.61 REMARK 500 19 ASP A 426 45.31 -161.29 REMARK 500 19 ALA A 432 100.98 -36.04 REMARK 500 19 PHE A 441 -172.40 -60.65 REMARK 500 20 PHE A 410 153.06 -36.01 REMARK 500 20 MET A 411 -70.34 -113.99 REMARK 500 20 ASP A 426 43.96 -174.61 REMARK 500 20 ALA A 432 98.43 -38.95 REMARK 500 20 PHE A 441 -172.88 -60.43 REMARK 500 20 ASN A 443 147.86 -174.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MV0 RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE TUMOR SUPPRESSOR BIN1 (RESIDUES 513- REMARK 900 593) AND THE ONCOPROTEIN C-MYC (RESIDUES 55-68) REMARK 900 RELATED ID: 1MV3 RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE TUMOR SUPPRESSOR BIN1 ISOFORM +12A REMARK 900 (RESIDUES 301-377, 458-593) REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE PROTEIN CRYSTALLIZED BY THE AUTHOR CONTAINS REMARK 999 LYS465 WHICH CORRESPONDS TO GLU576 IN THE SWISS-PROT REMARK 999 ENTRY O00499. THIS RESIDUE CONFLICT IS NOTED IN REMARK 999 THE DATABASE REFERENCE. DBREF 1MUZ A 402 482 UNP O00499 BIN1_HUMAN 513 593 SEQADV 1MUZ LYS A 465 UNP O00499 GLU 576 SEE REMARK 999 SEQRES 1 A 81 GLY ARG LEU ASP LEU PRO PRO GLY PHE MET PHE LYS VAL SEQRES 2 A 81 GLN ALA GLN HIS ASP TYR THR ALA THR ASP THR ASP GLU SEQRES 3 A 81 LEU GLN LEU LYS ALA GLY ASP VAL VAL LEU VAL ILE PRO SEQRES 4 A 81 PHE GLN ASN PRO GLU GLU GLN ASP GLU GLY TRP LEU MET SEQRES 5 A 81 GLY VAL LYS GLU SER ASP TRP ASN GLN HIS LYS LYS LEU SEQRES 6 A 81 GLU LYS CYS ARG GLY VAL PHE PRO GLU ASN PHE THR GLU SEQRES 7 A 81 ARG VAL PRO HELIX 1 1 ASN A 443 GLN A 447 5 5 HELIX 2 2 GLU A 457 GLN A 462 1 6 HELIX 3 3 HIS A 463 CYS A 469 5 7 SHEET 1 A 5 GLY A 471 PRO A 474 0 SHEET 2 A 5 TRP A 451 LYS A 456 -1 N LEU A 452 O PHE A 473 SHEET 3 A 5 VAL A 435 VAL A 438 -1 N LEU A 437 O VAL A 455 SHEET 4 A 5 PHE A 412 ALA A 416 -1 N VAL A 414 O VAL A 436 SHEET 5 A 5 THR A 478 ARG A 480 -1 O GLU A 479 N GLN A 415 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 205 0 0 3 5 0 0 6 0 0 0 7 END