HEADER OXIDOREDUCTASE (SUPEROXIDE ACCEPTOR) 10-NOV-92 1MSD TITLE COMPARISON OF THE CRYSTAL STRUCTURES OF GENETICALLY TITLE 2 ENGINEERED HUMAN MANGANESE SUPEROXIDE DISMUTASE AND TITLE 3 MANGANESE SUPEROXIDE DISMUTASE FROM THERMUS THERMOPHILUS. TITLE 4 DIFFERENCES IN DIMER-DIMER INTERACTIONS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANGANESE SUPEROXIDE DISMUTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS OXIDOREDUCTASE (SUPEROXIDE ACCEPTOR) EXPDTA X-RAY DIFFRACTION AUTHOR J.SUSSMAN,U.G.WAGNER,K.A.PATTRIDGE,M.L.LUDWIG REVDAT 2 24-FEB-09 1MSD 1 VERSN REVDAT 1 15-JUL-93 1MSD 0 JRNL AUTH U.G.WAGNER,K.A.PATTRIDGE,M.L.LUDWIG,W.C.STALLINGS, JRNL AUTH 2 M.M.WERBER,C.OEFNER,F.FROLOW,J.L.SUSSMAN JRNL TITL COMPARISON OF THE CRYSTAL STRUCTURES OF JRNL TITL 2 GENETICALLY ENGINEERED HUMAN MANGANESE SUPEROXIDE JRNL TITL 3 DISMUTASE AND MANGANESE SUPEROXIDE DISMUTASE FROM JRNL TITL 4 THERMUS THERMOPHILUS: DIFFERENCES IN DIMER-DIMER JRNL TITL 5 INTERACTION. JRNL REF PROTEIN SCI. V. 2 814 1993 JRNL REFN ISSN 0961-8368 JRNL PMID 8495200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH U.G.WAGNER,M.M.WERBER,Y.BECK,J.R.FROLOW,J.L.SUSSMAN REMARK 1 TITL CHARACTERIZATION OF CRYSTALS OF GENETICALLY REMARK 1 TITL 2 ENGINEERED HUMAN MANGANESE SUPEROXIDE DISMUTASE REMARK 1 REF J.MOL.BIOL. V. 206 787 1989 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3246 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MSD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 38.90000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.05000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.90000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.05000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: REMARK 300 THE TRANSFORMATION PRESENTED ON THE *MTRIX* RECORDS BELOW REMARK 300 WILL YIELD APPROXIMATE COORDINATES FOR CHAIN *A* WHEN REMARK 300 APPLIED TO CHAIN *B*. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 74.10000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 17 NE2 HIS A 17 CD2 -0.068 REMARK 500 HIS A 27 NE2 HIS A 27 CD2 -0.079 REMARK 500 HIS A 30 NE2 HIS A 30 CD2 -0.067 REMARK 500 HIS A 31 NE2 HIS A 31 CD2 -0.072 REMARK 500 HIS A 71 NE2 HIS A 71 CD2 -0.068 REMARK 500 GLU A 131 CD GLU A 131 OE2 0.085 REMARK 500 HIS A 134 NE2 HIS A 134 CD2 -0.078 REMARK 500 HIS A 163 NE2 HIS A 163 CD2 -0.072 REMARK 500 HIS B 17 NE2 HIS B 17 CD2 -0.067 REMARK 500 HIS B 27 NE2 HIS B 27 CD2 -0.075 REMARK 500 HIS B 30 NE2 HIS B 30 CD2 -0.079 REMARK 500 HIS B 71 NE2 HIS B 71 CD2 -0.082 REMARK 500 HIS B 74 NE2 HIS B 74 CD2 -0.076 REMARK 500 GLU B 88 CD GLU B 88 OE1 0.080 REMARK 500 GLU B 131 CD GLU B 131 OE2 0.090 REMARK 500 HIS B 134 NE2 HIS B 134 CD2 -0.067 REMARK 500 HIS B 163 NE2 HIS B 163 CD2 -0.083 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 34 CB - CG - CD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 TRP A 78 CD1 - CG - CD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 TRP A 78 CB - CG - CD1 ANGL. DEV. = -10.0 DEGREES REMARK 500 TRP A 78 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 TRP A 78 CG - CD2 - CE3 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG A 99 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 TRP A 123 CD1 - CG - CD2 ANGL. DEV. = 7.8 DEGREES REMARK 500 TRP A 123 CG - CD1 - NE1 ANGL. DEV. = -6.0 DEGREES REMARK 500 TRP A 123 CE2 - CD2 - CG ANGL. DEV. = -6.2 DEGREES REMARK 500 TRP A 123 CG - CD2 - CE3 ANGL. DEV. = 6.0 DEGREES REMARK 500 TRP A 125 CD1 - CG - CD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 TRP A 125 CE2 - CD2 - CG ANGL. DEV. = -6.1 DEGREES REMARK 500 ASN A 129 CB - CG - ND2 ANGL. DEV. = 15.0 DEGREES REMARK 500 GLN A 143 OE1 - CD - NE2 ANGL. DEV. = -14.3 DEGREES REMARK 500 TRP A 161 CD1 - CG - CD2 ANGL. DEV. = 4.9 DEGREES REMARK 500 TRP A 161 CE2 - CD2 - CG ANGL. DEV. = -5.0 DEGREES REMARK 500 TRP A 181 CD1 - CG - CD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 TRP A 181 CE2 - CD2 - CG ANGL. DEV. = -6.2 DEGREES REMARK 500 TRP A 181 CG - CD2 - CE3 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP A 186 CD1 - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 TRP A 186 CE2 - CD2 - CG ANGL. DEV. = -6.2 DEGREES REMARK 500 TYR A 193 CB - CG - CD1 ANGL. DEV. = -3.7 DEGREES REMARK 500 LYS A 197 N - CA - C ANGL. DEV. = 16.9 DEGREES REMARK 500 TYR B 34 CB - CG - CD2 ANGL. DEV. = -7.4 DEGREES REMARK 500 TYR B 45 CB - CG - CD1 ANGL. DEV. = -4.3 DEGREES REMARK 500 ASP B 53 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 TRP B 78 CD1 - CG - CD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP B 78 CB - CG - CD1 ANGL. DEV. = -9.0 DEGREES REMARK 500 TRP B 78 CE2 - CD2 - CG ANGL. DEV. = -6.3 DEGREES REMARK 500 TRP B 78 CG - CD2 - CE3 ANGL. DEV. = 6.9 DEGREES REMARK 500 GLU B 109 OE1 - CD - OE2 ANGL. DEV. = -7.2 DEGREES REMARK 500 TRP B 123 CD1 - CG - CD2 ANGL. DEV. = 7.7 DEGREES REMARK 500 TRP B 123 CE2 - CD2 - CG ANGL. DEV. = -6.4 DEGREES REMARK 500 TRP B 123 CG - CD2 - CE3 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP B 125 CD1 - CG - CD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 TRP B 125 CE2 - CD2 - CG ANGL. DEV. = -5.9 DEGREES REMARK 500 GLN B 143 OE1 - CD - NE2 ANGL. DEV. = -13.9 DEGREES REMARK 500 TRP B 161 CD1 - CG - CD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 TRP B 161 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 HIS B 163 CA - CB - CG ANGL. DEV. = 11.2 DEGREES REMARK 500 TYR B 169 CB - CG - CD1 ANGL. DEV. = -4.3 DEGREES REMARK 500 TRP B 181 CD1 - CG - CD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 TRP B 181 CB - CG - CD1 ANGL. DEV. = -7.9 DEGREES REMARK 500 TRP B 181 CE2 - CD2 - CG ANGL. DEV. = -5.9 DEGREES REMARK 500 TRP B 181 CG - CD2 - CE3 ANGL. DEV. = 5.7 DEGREES REMARK 500 TRP B 186 CE2 - CD2 - CG ANGL. DEV. = -5.3 DEGREES REMARK 500 LYS B 197 N - CA - C ANGL. DEV. = 16.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 13 -4.12 -54.36 REMARK 500 SER A 82 144.58 -171.16 REMARK 500 GLN A 119 103.04 -52.82 REMARK 500 GLN A 136 113.83 -168.44 REMARK 500 ASN A 142 -131.19 53.48 REMARK 500 LYS A 170 -138.26 48.33 REMARK 500 ASN A 171 -7.21 -55.94 REMARK 500 ASN A 185 79.28 -68.03 REMARK 500 LYS A 197 86.06 17.41 REMARK 500 ALA B 13 -3.09 -55.13 REMARK 500 SER B 28 -64.17 -90.70 REMARK 500 SER B 82 141.13 -171.72 REMARK 500 GLN B 119 102.56 -52.23 REMARK 500 GLN B 136 114.59 -165.14 REMARK 500 ASN B 142 -130.44 53.82 REMARK 500 LYS B 170 -138.64 50.68 REMARK 500 ASN B 171 -9.04 -55.55 REMARK 500 ASN B 185 80.62 -69.35 REMARK 500 LYS B 197 87.04 15.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 193 0.07 SIDE_CHAIN REMARK 500 PHE B 107 0.08 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 200 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 74 NE2 REMARK 620 2 HIS A 26 NE2 76.3 REMARK 620 3 ASP A 159 OD2 102.3 75.3 REMARK 620 4 HIS A 163 NE2 124.5 82.1 120.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 200 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 74 NE2 REMARK 620 2 ASP B 159 OD2 100.0 REMARK 620 3 HIS B 163 NE2 116.3 129.5 REMARK 620 4 HIS B 26 NE2 72.2 76.8 82.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 200 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 200 DBREF 1MSD A 1 198 UNP P04179 SODM_HUMAN 25 222 DBREF 1MSD B 1 198 UNP P04179 SODM_HUMAN 25 222 SEQRES 1 A 198 LYS HIS SER LEU PRO ASP LEU PRO TYR ASP TYR GLY ALA SEQRES 2 A 198 LEU GLU PRO HIS ILE ASN ALA GLN ILE MET GLN LEU HIS SEQRES 3 A 198 HIS SER LYS HIS HIS ALA ALA TYR VAL ASN ASN LEU ASN SEQRES 4 A 198 VAL THR GLU GLU LYS TYR GLN GLU ALA LEU ALA LYS GLY SEQRES 5 A 198 ASP VAL THR ALA GLN ILE ALA LEU GLN PRO ALA LEU LYS SEQRES 6 A 198 PHE ASN GLY GLY GLY HIS ILE ASN HIS SER ILE PHE TRP SEQRES 7 A 198 THR ASN LEU SER PRO ASN GLY GLY GLY GLU PRO LYS GLY SEQRES 8 A 198 GLU LEU LEU GLU ALA ILE LYS ARG ASP PHE GLY SER PHE SEQRES 9 A 198 ASP LYS PHE LYS GLU LYS LEU THR ALA ALA SER VAL GLY SEQRES 10 A 198 VAL GLN GLY SER GLY TRP GLY TRP LEU GLY PHE ASN LYS SEQRES 11 A 198 GLU ARG GLY HIS LEU GLN ILE ALA ALA CYS PRO ASN GLN SEQRES 12 A 198 ASP PRO LEU GLN GLY THR THR GLY LEU ILE PRO LEU LEU SEQRES 13 A 198 GLY ILE ASP VAL TRP GLU HIS ALA TYR TYR LEU GLN TYR SEQRES 14 A 198 LYS ASN VAL ARG PRO ASP TYR LEU LYS ALA ILE TRP ASN SEQRES 15 A 198 VAL ILE ASN TRP GLU ASN VAL THR GLU ARG TYR MET ALA SEQRES 16 A 198 CYS LYS LYS SEQRES 1 B 198 LYS HIS SER LEU PRO ASP LEU PRO TYR ASP TYR GLY ALA SEQRES 2 B 198 LEU GLU PRO HIS ILE ASN ALA GLN ILE MET GLN LEU HIS SEQRES 3 B 198 HIS SER LYS HIS HIS ALA ALA TYR VAL ASN ASN LEU ASN SEQRES 4 B 198 VAL THR GLU GLU LYS TYR GLN GLU ALA LEU ALA LYS GLY SEQRES 5 B 198 ASP VAL THR ALA GLN ILE ALA LEU GLN PRO ALA LEU LYS SEQRES 6 B 198 PHE ASN GLY GLY GLY HIS ILE ASN HIS SER ILE PHE TRP SEQRES 7 B 198 THR ASN LEU SER PRO ASN GLY GLY GLY GLU PRO LYS GLY SEQRES 8 B 198 GLU LEU LEU GLU ALA ILE LYS ARG ASP PHE GLY SER PHE SEQRES 9 B 198 ASP LYS PHE LYS GLU LYS LEU THR ALA ALA SER VAL GLY SEQRES 10 B 198 VAL GLN GLY SER GLY TRP GLY TRP LEU GLY PHE ASN LYS SEQRES 11 B 198 GLU ARG GLY HIS LEU GLN ILE ALA ALA CYS PRO ASN GLN SEQRES 12 B 198 ASP PRO LEU GLN GLY THR THR GLY LEU ILE PRO LEU LEU SEQRES 13 B 198 GLY ILE ASP VAL TRP GLU HIS ALA TYR TYR LEU GLN TYR SEQRES 14 B 198 LYS ASN VAL ARG PRO ASP TYR LEU LYS ALA ILE TRP ASN SEQRES 15 B 198 VAL ILE ASN TRP GLU ASN VAL THR GLU ARG TYR MET ALA SEQRES 16 B 198 CYS LYS LYS HET MN A 200 1 HET MN B 200 1 HETNAM MN MANGANESE (II) ION FORMUL 3 MN 2(MN 2+) HELIX 1 A1 ALA A 20 ALA A 50 1 31 HELIX 2 A2 VAL A 54 ASN A 80 1 27 HELIX 3 A3 GLY A 91 PHE A 101 1 11 HELIX 4 A4 PHE A 104 VAL A 116 1 13 HELIX 5 A5 LEU A 146 THR A 150 1 5 HELIX 6 A6 TYR A 166 TYR A 169 1 4 HELIX 7 A7 ARG A 173 ILE A 180 1 8 HELIX 8 A8 TRP A 186 ALA A 195 1 10 HELIX 9 B1 ALA B 20 ALA B 50 1 31 HELIX 10 B2 VAL B 54 ASN B 80 1 27 HELIX 11 B3 GLY B 91 PHE B 101 1 11 HELIX 12 B4 PHE B 104 VAL B 116 1 13 HELIX 13 B5 LEU B 146 THR B 150 1 5 HELIX 14 B6 TYR B 166 TYR B 169 1 4 HELIX 15 B7 ARG B 173 ILE B 180 1 8 HELIX 16 B8 TRP B 186 ALA B 195 1 10 SHEET 1 B1A 3 HIS A 134 PRO A 141 0 SHEET 2 B1A 3 TRP A 123 ASN A 129 -1 SHEET 3 B1A 3 ILE A 153 ASP A 159 -1 SHEET 1 B1B 3 HIS B 134 PRO B 141 0 SHEET 2 B1B 3 TRP B 123 ASN B 129 -1 SHEET 3 B1B 3 ILE B 153 ASP B 159 -1 LINK MN MN A 200 NE2 HIS A 74 1555 1555 1.92 LINK MN MN A 200 NE2 HIS A 26 1555 1555 2.30 LINK MN MN A 200 OD2 ASP A 159 1555 1555 2.08 LINK MN MN A 200 NE2 HIS A 163 1555 1555 1.86 LINK MN MN B 200 NE2 HIS B 74 1555 1555 2.12 LINK MN MN B 200 OD2 ASP B 159 1555 1555 1.95 LINK MN MN B 200 NE2 HIS B 163 1555 1555 1.84 LINK MN MN B 200 NE2 HIS B 26 1555 1555 2.31 CISPEP 1 GLU A 15 PRO A 16 0 7.47 CISPEP 2 GLU B 15 PRO B 16 0 6.44 SITE 1 AC1 4 HIS A 26 HIS A 74 ASP A 159 HIS A 163 SITE 1 AC2 4 HIS B 26 HIS B 74 ASP B 159 HIS B 163 CRYST1 77.800 74.100 68.420 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012853 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013495 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014616 0.00000 MTRIX1 1 -0.915784 -0.401576 -0.008690 15.13192 1 MTRIX2 1 -0.401525 0.915821 -0.007107 3.27386 1 MTRIX3 1 0.010812 -0.003019 -0.999937 34.89312 1 MASTER 389 1 2 16 6 0 2 9 0 0 0 32 END