HEADER TRANSFERASE 05-SEP-02 1MN7 TITLE NDP KINASE MUTANT (H122G;N119S;F64W) IN COMPLEX WITH ABAZTTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: NDP KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NUCLEOSIDE DIPHOSPHATE KINASE, CYTOSOLIC; COMPND 5 EC: 2.7.4.6; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DICTYOSTELIUM DISCOIDEUM; SOURCE 3 ORGANISM_TAXID: 44689; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PNDK KEYWDS NDP KINASE-ABAZTTP COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.GALLOIS-MONTBRUN,B.SCHNEIDER,Y.CHEN,V.GIACOMONI-FERNANDES,L.MULARD, AUTHOR 2 S.MORERA,J.JANIN,D.DEVILLE-BONNE,M.VERON REVDAT 4 13-JUL-11 1MN7 1 VERSN REVDAT 3 24-FEB-09 1MN7 1 VERSN REVDAT 2 18-DEC-02 1MN7 1 JRNL REVDAT 1 02-OCT-02 1MN7 0 JRNL AUTH S.GALLOIS-MONTBRUN,B.SCHNEIDER,Y.CHEN,V.GIACOMONI-FERNANDES, JRNL AUTH 2 L.MULARD,S.MORERA,J.JANIN,D.DEVILLE-BONNE,M.VERON JRNL TITL IMPROVING NUCLEOSIDE DIPHOSPHATE KINASE FOR ANTIVIRAL JRNL TITL 2 NUCLEOTIDE ANALOGS ACTIVATION JRNL REF J.BIOL.CHEM. V. 277 39953 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 12171931 JRNL DOI 10.1074/JBC.M206360200 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 16072 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 793 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2282 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 307 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.45 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MN7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-SEP-02. REMARK 100 THE RCSB ID CODE IS RCSB017032. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16077 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05100 REMARK 200 FOR THE DATA SET : 19.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.41700 REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG550, MES, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.33850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.33850 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.33850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HEXAMER GENERATED FROM THE REMARK 300 DIMER IN THE ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 18040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -99.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 71.23800 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 35.61900 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 61.69392 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 ASN A 4 REMARK 465 LYS A 5 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 THR B 3 REMARK 465 ASN B 4 REMARK 465 LYS B 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2323 O HOH B 2323 3565 1.91 REMARK 500 O HOH B 2233 O HOH B 2233 3565 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 92 NE - CZ - NH1 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG A 92 NE - CZ - NH2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 118 CD - NE - CZ ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG A 118 NE - CZ - NH1 ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG A 118 NE - CZ - NH2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG B 92 CD - NE - CZ ANGL. DEV. = 9.4 DEGREES REMARK 500 ARG B 92 NE - CZ - NH1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG B 92 NE - CZ - NH2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ARG B 118 CD - NE - CZ ANGL. DEV. = 10.3 DEGREES REMARK 500 ARG B 118 NE - CZ - NH1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG B 118 NE - CZ - NH2 ANGL. DEV. = -7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 43 153.43 176.80 REMARK 500 GLU A 61 44.62 -93.04 REMARK 500 VAL A 114 -20.64 -143.56 REMARK 500 ILE A 120 -53.48 65.74 REMARK 500 GLU A 146 101.97 -57.59 REMARK 500 VAL B 114 -21.86 -142.52 REMARK 500 ILE B 120 -54.29 66.30 REMARK 500 THR B 145 -73.16 -113.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1184 DISTANCE = 8.43 ANGSTROMS REMARK 525 HOH A1198 DISTANCE = 5.22 ANGSTROMS REMARK 525 HOH A1207 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A1216 DISTANCE = 7.95 ANGSTROMS REMARK 525 HOH A1218 DISTANCE = 7.35 ANGSTROMS REMARK 525 HOH A1219 DISTANCE = 5.73 ANGSTROMS REMARK 525 HOH A1225 DISTANCE = 7.08 ANGSTROMS REMARK 525 HOH A1226 DISTANCE = 8.62 ANGSTROMS REMARK 525 HOH A1227 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A1228 DISTANCE = 5.24 ANGSTROMS REMARK 525 HOH A1233 DISTANCE = 10.26 ANGSTROMS REMARK 525 HOH A1234 DISTANCE = 7.02 ANGSTROMS REMARK 525 HOH A1237 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH A1238 DISTANCE = 9.58 ANGSTROMS REMARK 525 HOH A1240 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH A1241 DISTANCE = 5.28 ANGSTROMS REMARK 525 HOH A1242 DISTANCE = 5.46 ANGSTROMS REMARK 525 HOH A1243 DISTANCE = 8.98 ANGSTROMS REMARK 525 HOH A1245 DISTANCE = 5.20 ANGSTROMS REMARK 525 HOH A1250 DISTANCE = 8.21 ANGSTROMS REMARK 525 HOH A1251 DISTANCE = 9.70 ANGSTROMS REMARK 525 HOH A1253 DISTANCE = 5.69 ANGSTROMS REMARK 525 HOH A1254 DISTANCE = 5.71 ANGSTROMS REMARK 525 HOH A1256 DISTANCE = 10.21 ANGSTROMS REMARK 525 HOH A1257 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH A1259 DISTANCE = 7.40 ANGSTROMS REMARK 525 HOH A1260 DISTANCE = 12.12 ANGSTROMS REMARK 525 HOH A1261 DISTANCE = 12.49 ANGSTROMS REMARK 525 HOH A1262 DISTANCE = 7.39 ANGSTROMS REMARK 525 HOH A1265 DISTANCE = 12.98 ANGSTROMS REMARK 525 HOH A1266 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH A1267 DISTANCE = 5.06 ANGSTROMS REMARK 525 HOH A1269 DISTANCE = 7.61 ANGSTROMS REMARK 525 HOH A1270 DISTANCE = 7.15 ANGSTROMS REMARK 525 HOH A1277 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A1280 DISTANCE = 5.37 ANGSTROMS REMARK 525 HOH A1284 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A1285 DISTANCE = 5.59 ANGSTROMS REMARK 525 HOH A1286 DISTANCE = 7.93 ANGSTROMS REMARK 525 HOH A1288 DISTANCE = 9.90 ANGSTROMS REMARK 525 HOH A1289 DISTANCE = 5.71 ANGSTROMS REMARK 525 HOH A1290 DISTANCE = 10.00 ANGSTROMS REMARK 525 HOH A1294 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A1295 DISTANCE = 7.96 ANGSTROMS REMARK 525 HOH A1296 DISTANCE = 8.31 ANGSTROMS REMARK 525 HOH B2184 DISTANCE = 5.52 ANGSTROMS REMARK 525 HOH B2206 DISTANCE = 8.44 ANGSTROMS REMARK 525 HOH B2218 DISTANCE = 8.56 ANGSTROMS REMARK 525 HOH B2221 DISTANCE = 5.28 ANGSTROMS REMARK 525 HOH B2230 DISTANCE = 7.39 ANGSTROMS REMARK 525 HOH B2231 DISTANCE = 5.23 ANGSTROMS REMARK 525 HOH B2233 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH B2236 DISTANCE = 5.45 ANGSTROMS REMARK 525 HOH B2239 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH B2243 DISTANCE = 5.57 ANGSTROMS REMARK 525 HOH B2249 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH B2253 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH B2256 DISTANCE = 5.68 ANGSTROMS REMARK 525 HOH B2257 DISTANCE = 11.41 ANGSTROMS REMARK 525 HOH B2259 DISTANCE = 8.60 ANGSTROMS REMARK 525 HOH B2264 DISTANCE = 10.95 ANGSTROMS REMARK 525 HOH B2265 DISTANCE = 5.09 ANGSTROMS REMARK 525 HOH B2266 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH B2270 DISTANCE = 5.04 ANGSTROMS REMARK 525 HOH B2273 DISTANCE = 5.38 ANGSTROMS REMARK 525 HOH B2274 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH B2276 DISTANCE = 8.31 ANGSTROMS REMARK 525 HOH B2277 DISTANCE = 7.62 ANGSTROMS REMARK 525 HOH B2282 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH B2283 DISTANCE = 10.65 ANGSTROMS REMARK 525 HOH B2289 DISTANCE = 5.11 ANGSTROMS REMARK 525 HOH B2295 DISTANCE = 5.72 ANGSTROMS REMARK 525 HOH B2299 DISTANCE = 10.01 ANGSTROMS REMARK 525 HOH B2303 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH B2321 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH B2322 DISTANCE = 8.06 ANGSTROMS REMARK 525 HOH B2323 DISTANCE = 7.74 ANGSTROMS REMARK 525 HOH B2330 DISTANCE = 6.58 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1165 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ABT A1160 O1G REMARK 620 2 ABT A1160 O1B 82.6 REMARK 620 3 ABT A1160 O2A 75.0 74.1 REMARK 620 4 HOH A1180 O 84.0 152.5 79.3 REMARK 620 5 HOH A1298 O 165.2 110.1 100.6 81.3 REMARK 620 6 HOH A1167 O 108.7 89.0 162.3 118.1 79.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2165 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ABT B2160 O1G REMARK 620 2 ABT B2160 O2A 89.0 REMARK 620 3 HOH B2166 O 83.5 168.9 REMARK 620 4 HOH B2176 O 90.6 100.8 87.5 REMARK 620 5 ABT B2160 O1B 87.3 88.7 82.8 170.3 REMARK 620 6 HOH B2170 O 173.3 97.7 89.8 88.3 92.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 2165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ABT A 1160 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ABT B 2160 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LWX RELATED DB: PDB REMARK 900 1LWX CONTAINS THE SAME PROTEIN COMPLEXED WITH AZT REMARK 900 DIPHOSPHATE REMARK 900 RELATED ID: 1F6T RELATED DB: PDB REMARK 900 1F6T CONTAINS THE SAME PROTEIN COMPLEXED WITH ALPHA- REMARK 900 BORANO(RP)-TDP AND MG DBREF 1MN7 A 1 155 UNP P22887 NDKC_DICDI 1 155 DBREF 1MN7 B 1 155 UNP P22887 NDKC_DICDI 1 155 SEQADV 1MN7 TRP A 64 UNP P22887 PHE 64 ENGINEERED SEQADV 1MN7 SER A 119 UNP P22887 ASN 119 ENGINEERED SEQADV 1MN7 GLY A 122 UNP P22887 HIS 122 ENGINEERED SEQADV 1MN7 TRP B 64 UNP P22887 PHE 64 ENGINEERED SEQADV 1MN7 SER B 119 UNP P22887 ASN 119 ENGINEERED SEQADV 1MN7 GLY B 122 UNP P22887 HIS 122 ENGINEERED SEQRES 1 A 155 MET SER THR ASN LYS VAL ASN LYS GLU ARG THR PHE LEU SEQRES 2 A 155 ALA VAL LYS PRO ASP GLY VAL ALA ARG GLY LEU VAL GLY SEQRES 3 A 155 GLU ILE ILE ALA ARG TYR GLU LYS LYS GLY PHE VAL LEU SEQRES 4 A 155 VAL GLY LEU LYS GLN LEU VAL PRO THR LYS ASP LEU ALA SEQRES 5 A 155 GLU SER HIS TYR ALA GLU HIS LYS GLU ARG PRO TRP PHE SEQRES 6 A 155 GLY GLY LEU VAL SER PHE ILE THR SER GLY PRO VAL VAL SEQRES 7 A 155 ALA MET VAL PHE GLU GLY LYS GLY VAL VAL ALA SER ALA SEQRES 8 A 155 ARG LEU MET ILE GLY VAL THR ASN PRO LEU ALA SER ALA SEQRES 9 A 155 PRO GLY SER ILE ARG GLY ASP PHE GLY VAL ASP VAL GLY SEQRES 10 A 155 ARG SER ILE ILE GLY GLY SER ASP SER VAL GLU SER ALA SEQRES 11 A 155 ASN ARG GLU ILE ALA LEU TRP PHE LYS PRO GLU GLU LEU SEQRES 12 A 155 LEU THR GLU VAL LYS PRO ASN PRO ASN LEU TYR GLU SEQRES 1 B 155 MET SER THR ASN LYS VAL ASN LYS GLU ARG THR PHE LEU SEQRES 2 B 155 ALA VAL LYS PRO ASP GLY VAL ALA ARG GLY LEU VAL GLY SEQRES 3 B 155 GLU ILE ILE ALA ARG TYR GLU LYS LYS GLY PHE VAL LEU SEQRES 4 B 155 VAL GLY LEU LYS GLN LEU VAL PRO THR LYS ASP LEU ALA SEQRES 5 B 155 GLU SER HIS TYR ALA GLU HIS LYS GLU ARG PRO TRP PHE SEQRES 6 B 155 GLY GLY LEU VAL SER PHE ILE THR SER GLY PRO VAL VAL SEQRES 7 B 155 ALA MET VAL PHE GLU GLY LYS GLY VAL VAL ALA SER ALA SEQRES 8 B 155 ARG LEU MET ILE GLY VAL THR ASN PRO LEU ALA SER ALA SEQRES 9 B 155 PRO GLY SER ILE ARG GLY ASP PHE GLY VAL ASP VAL GLY SEQRES 10 B 155 ARG SER ILE ILE GLY GLY SER ASP SER VAL GLU SER ALA SEQRES 11 B 155 ASN ARG GLU ILE ALA LEU TRP PHE LYS PRO GLU GLU LEU SEQRES 12 B 155 LEU THR GLU VAL LYS PRO ASN PRO ASN LEU TYR GLU HET MG A1165 1 HET MG B2165 1 HET ABT A1160 31 HET ABT B2160 31 HETNAM MG MAGNESIUM ION HETNAM ABT 3'-AZIDO-3'-DEOXY-THYMIDINE-5'-ALPHA BORANO HETNAM 2 ABT TRIPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 5 ABT 2(C10 H17 B N5 O12 P3) FORMUL 7 HOH *307(H2 O) HELIX 1 1 LYS A 16 ARG A 22 1 7 HELIX 2 2 LEU A 24 GLY A 36 1 13 HELIX 3 3 THR A 48 TYR A 56 1 9 HELIX 4 4 ALA A 57 LYS A 60 5 4 HELIX 5 5 TRP A 64 THR A 73 1 10 HELIX 6 6 GLY A 86 GLY A 96 1 11 HELIX 7 7 SER A 107 GLY A 113 1 7 HELIX 8 8 ASP A 115 SER A 119 5 5 HELIX 9 9 SER A 126 PHE A 138 1 13 HELIX 10 10 LYS A 139 LEU A 143 5 5 HELIX 11 11 LYS B 16 ARG B 22 1 7 HELIX 12 12 LEU B 24 GLY B 36 1 13 HELIX 13 13 THR B 48 TYR B 56 1 9 HELIX 14 14 ALA B 57 LYS B 60 5 4 HELIX 15 15 TRP B 64 THR B 73 1 10 HELIX 16 16 GLY B 86 GLY B 96 1 11 HELIX 17 17 SER B 107 GLY B 113 1 7 HELIX 18 18 ASP B 115 SER B 119 5 5 HELIX 19 19 SER B 126 PHE B 138 1 13 HELIX 20 20 LYS B 139 LEU B 143 5 5 SHEET 1 A 4 VAL A 38 LEU A 45 0 SHEET 2 A 4 VAL A 77 GLU A 83 -1 O VAL A 77 N LEU A 45 SHEET 3 A 4 ARG A 10 VAL A 15 -1 N LEU A 13 O MET A 80 SHEET 4 A 4 ILE A 121 GLY A 123 -1 O GLY A 122 N ALA A 14 SHEET 1 B 4 VAL B 38 LEU B 45 0 SHEET 2 B 4 VAL B 77 GLU B 83 -1 O ALA B 79 N LYS B 43 SHEET 3 B 4 ARG B 10 VAL B 15 -1 N LEU B 13 O MET B 80 SHEET 4 B 4 ILE B 121 GLY B 123 -1 O GLY B 122 N ALA B 14 LINK MG MG A1165 O1G ABT A1160 1555 1555 1.88 LINK MG MG A1165 O1B ABT A1160 1555 1555 2.15 LINK MG MG B2165 O1G ABT B2160 1555 1555 1.75 LINK MG MG B2165 O2A ABT B2160 1555 1555 2.05 LINK MG MG A1165 O2A ABT A1160 1555 1555 2.29 LINK MG MG A1165 O HOH A1180 1555 1555 2.13 LINK MG MG A1165 O HOH A1298 1555 1555 1.83 LINK MG MG A1165 O HOH A1167 1555 1555 2.05 LINK MG MG B2165 O HOH B2166 1555 1555 2.09 LINK MG MG B2165 O HOH B2176 1555 1555 1.74 LINK MG MG B2165 O1B ABT B2160 1555 1555 2.27 LINK MG MG B2165 O HOH B2170 1555 1555 2.13 SITE 1 AC1 4 ABT A1160 HOH A1167 HOH A1180 HOH A1298 SITE 1 AC2 4 ABT B2160 HOH B2166 HOH B2170 HOH B2176 SITE 1 AC3 15 LYS A 16 TYR A 56 HIS A 59 TRP A 64 SITE 2 AC3 15 LEU A 68 ARG A 92 THR A 98 ARG A 109 SITE 3 AC3 15 VAL A 116 SER A 119 GLY A 122 GLY A 123 SITE 4 AC3 15 MG A1165 HOH A1167 HOH A1180 SITE 1 AC4 15 LYS B 16 TYR B 56 HIS B 59 TRP B 64 SITE 2 AC4 15 LEU B 68 ARG B 92 THR B 98 ARG B 109 SITE 3 AC4 15 VAL B 116 SER B 119 GLY B 122 GLY B 123 SITE 4 AC4 15 MG B2165 HOH B2166 HOH B2176 CRYST1 71.238 71.238 106.677 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014037 0.008105 0.000000 0.00000 SCALE2 0.000000 0.016209 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009374 0.00000 MASTER 461 0 4 20 8 0 10 6 0 0 0 24 END