HEADER PROTEIN BINDING 03-AUG-02 1MBX TITLE CRYSTAL STRUCTURE ANALYSIS OF CLPSN WITH TRANSITION METAL ION BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLP A; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PROTEIN YLJA; COMPND 7 CHAIN: C, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: DH5 ALPHA; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBAD33-YLJA; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: SG22176; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PFG42 KEYWDS PROTEIN BINDING, ADAPTORS, HSP100/CLP CHAPERONE, AAA+ FAMILY, ATP- KEYWDS 2 DEPENDENT PROTEASE EXPDTA X-RAY DIFFRACTION AUTHOR F.GUO,L.ESSER,S.K.SINGH,M.R.MAURIZI,D.XIA REVDAT 5 04-APR-18 1MBX 1 REMARK REVDAT 4 31-JAN-18 1MBX 1 REMARK REVDAT 3 13-JUL-11 1MBX 1 VERSN REVDAT 2 24-FEB-09 1MBX 1 VERSN REVDAT 1 11-DEC-02 1MBX 0 JRNL AUTH F.GUO,L.ESSER,S.K.SINGH,M.R.MAURIZI,D.XIA JRNL TITL CRYSTAL STRUCTURE OF THE HETERODIMERIC COMPLEX OF THE JRNL TITL 2 ADAPTOR, CLPS, WITH THE N-DOMAIN OF THE AAA+ CHAPERONE, CLPA JRNL REF J.BIOL.CHEM. V. 277 46753 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 12235156 JRNL DOI 10.1074/JBC.M208104200 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 511609.520 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 43733 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4404 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.39 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 9247 REMARK 3 BIN R VALUE (WORKING SET) : 0.3540 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 569 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.011 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3631 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 184 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.84000 REMARK 3 B22 (A**2) : -1.84000 REMARK 3 B33 (A**2) : 3.68000 REMARK 3 B12 (A**2) : 1.99000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : 0.33 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.33 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.080 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.460 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.390 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.590 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.790 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 39.87 REMARK 3 REMARK 3 NCS MODEL : RESTRAINED REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : YBT.PAR REMARK 3 PARAMETER FILE 4 : GOL.PAR REMARK 3 PARAMETER FILE 5 : ION.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : YBT.TOP REMARK 3 TOPOLOGY FILE 4 : GOL.TOP REMARK 3 TOPOLOGY FILE 5 : ION.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MBX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-02. REMARK 100 THE DEPOSITION ID IS D_1000016807. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OTHER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48936 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04600 REMARK 200 FOR THE DATA SET : 46.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 48.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.67900 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS 1.1 REMARK 200 STARTING MODEL: PDB ENTRY 1MBU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: GLYCEROL, BIS-TRIS , YTTRIUM CHLORIDE, REMARK 280 PH 6.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 21K, REMARK 280 TEMPERATURE 294.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.98500 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 141.97000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 141.97000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 70.98500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS TWO HETERODIMERS OF CLPSN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 1 REMARK 465 GLY C 2 REMARK 465 LYS C 3 REMARK 465 THR C 4 REMARK 465 ASN C 5 REMARK 465 ASP C 6 REMARK 465 TRP C 7 REMARK 465 LEU C 8 REMARK 465 ASP C 9 REMARK 465 PHE C 10 REMARK 465 ASP C 11 REMARK 465 GLN C 12 REMARK 465 LEU C 13 REMARK 465 ALA C 14 REMARK 465 GLU C 15 REMARK 465 GLU C 16 REMARK 465 LYS C 17 REMARK 465 VAL C 18 REMARK 465 ARG C 19 REMARK 465 MET D 1 REMARK 465 GLY D 2 REMARK 465 LYS D 3 REMARK 465 THR D 4 REMARK 465 ASN D 5 REMARK 465 ASP D 6 REMARK 465 TRP D 7 REMARK 465 LEU D 8 REMARK 465 ASP D 9 REMARK 465 PHE D 10 REMARK 465 ASP D 11 REMARK 465 GLN D 12 REMARK 465 LEU D 13 REMARK 465 ALA D 14 REMARK 465 GLU D 15 REMARK 465 GLU D 16 REMARK 465 LYS D 17 REMARK 465 VAL D 18 REMARK 465 ARG D 19 REMARK 465 ASP D 20 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP C 20 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 28 O HOH A 259 1.98 REMARK 500 O HOH A 223 O HOH A 259 2.05 REMARK 500 OE1 GLU C 79 O HOH A 259 2.07 REMARK 500 ND1 HIS D 66 Y1 YBT D 107 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 16 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 72 -79.12 -60.61 REMARK 500 GLU A 73 104.34 -37.36 REMARK 500 THR A 78 120.97 -38.74 REMARK 500 SER B 72 -71.46 -52.42 REMARK 500 GLU B 73 100.13 -30.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 210 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 22 NE2 REMARK 620 2 GLU A 63 OE2 112.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 211 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 20 ND1 REMARK 620 2 HIS B 22 NE2 112.1 REMARK 620 3 GLU B 63 OE2 104.8 122.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 143 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YBT B 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YBT A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YBT B 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YBT A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YBT D 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 215 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MBU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF CLPSN HETERODIMER REMARK 900 RELATED ID: 1MBV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF CLPSN HETERODIMER TETERAGONAL FORM DBREF 1MBX A 1 142 UNP P0ABH9 CLPA_ECOLI 1 142 DBREF 1MBX B 1 142 UNP P0ABH9 CLPA_ECOLI 1 142 DBREF 1MBX C 1 106 UNP P0A8Q6 CLPS_ECOLI 1 106 DBREF 1MBX D 1 106 UNP P0A8Q6 CLPS_ECOLI 1 106 SEQRES 1 A 142 MET LEU ASN GLN GLU LEU GLU LEU SER LEU ASN MET ALA SEQRES 2 A 142 PHE ALA ARG ALA ARG GLU HIS ARG HIS GLU PHE MET THR SEQRES 3 A 142 VAL GLU HIS LEU LEU LEU ALA LEU LEU SER ASN PRO SER SEQRES 4 A 142 ALA ARG GLU ALA LEU GLU ALA CYS SER VAL ASP LEU VAL SEQRES 5 A 142 ALA LEU ARG GLN GLU LEU GLU ALA PHE ILE GLU GLN THR SEQRES 6 A 142 THR PRO VAL LEU PRO ALA SER GLU GLU GLU ARG ASP THR SEQRES 7 A 142 GLN PRO THR LEU SER PHE GLN ARG VAL LEU GLN ARG ALA SEQRES 8 A 142 VAL PHE HIS VAL GLN SER SER GLY ARG ASN GLU VAL THR SEQRES 9 A 142 GLY ALA ASN VAL LEU VAL ALA ILE PHE SER GLU GLN GLU SEQRES 10 A 142 SER GLN ALA ALA TYR LEU LEU ARG LYS HIS GLU VAL SER SEQRES 11 A 142 ARG LEU ASP VAL VAL ASN PHE ILE SER HIS GLY THR SEQRES 1 B 142 MET LEU ASN GLN GLU LEU GLU LEU SER LEU ASN MET ALA SEQRES 2 B 142 PHE ALA ARG ALA ARG GLU HIS ARG HIS GLU PHE MET THR SEQRES 3 B 142 VAL GLU HIS LEU LEU LEU ALA LEU LEU SER ASN PRO SER SEQRES 4 B 142 ALA ARG GLU ALA LEU GLU ALA CYS SER VAL ASP LEU VAL SEQRES 5 B 142 ALA LEU ARG GLN GLU LEU GLU ALA PHE ILE GLU GLN THR SEQRES 6 B 142 THR PRO VAL LEU PRO ALA SER GLU GLU GLU ARG ASP THR SEQRES 7 B 142 GLN PRO THR LEU SER PHE GLN ARG VAL LEU GLN ARG ALA SEQRES 8 B 142 VAL PHE HIS VAL GLN SER SER GLY ARG ASN GLU VAL THR SEQRES 9 B 142 GLY ALA ASN VAL LEU VAL ALA ILE PHE SER GLU GLN GLU SEQRES 10 B 142 SER GLN ALA ALA TYR LEU LEU ARG LYS HIS GLU VAL SER SEQRES 11 B 142 ARG LEU ASP VAL VAL ASN PHE ILE SER HIS GLY THR SEQRES 1 C 106 MET GLY LYS THR ASN ASP TRP LEU ASP PHE ASP GLN LEU SEQRES 2 C 106 ALA GLU GLU LYS VAL ARG ASP ALA LEU LYS PRO PRO SER SEQRES 3 C 106 MET TYR LYS VAL ILE LEU VAL ASN ASP ASP TYR THR PRO SEQRES 4 C 106 MET GLU PHE VAL ILE ASP VAL LEU GLN LYS PHE PHE SER SEQRES 5 C 106 TYR ASP VAL GLU ARG ALA THR GLN LEU MET LEU ALA VAL SEQRES 6 C 106 HIS TYR GLN GLY LYS ALA ILE CYS GLY VAL PHE THR ALA SEQRES 7 C 106 GLU VAL ALA GLU THR LYS VAL ALA MET VAL ASN LYS TYR SEQRES 8 C 106 ALA ARG GLU ASN GLU HIS PRO LEU LEU CYS THR LEU GLU SEQRES 9 C 106 LYS ALA SEQRES 1 D 106 MET GLY LYS THR ASN ASP TRP LEU ASP PHE ASP GLN LEU SEQRES 2 D 106 ALA GLU GLU LYS VAL ARG ASP ALA LEU LYS PRO PRO SER SEQRES 3 D 106 MET TYR LYS VAL ILE LEU VAL ASN ASP ASP TYR THR PRO SEQRES 4 D 106 MET GLU PHE VAL ILE ASP VAL LEU GLN LYS PHE PHE SER SEQRES 5 D 106 TYR ASP VAL GLU ARG ALA THR GLN LEU MET LEU ALA VAL SEQRES 6 D 106 HIS TYR GLN GLY LYS ALA ILE CYS GLY VAL PHE THR ALA SEQRES 7 D 106 GLU VAL ALA GLU THR LYS VAL ALA MET VAL ASN LYS TYR SEQRES 8 D 106 ALA ARG GLU ASN GLU HIS PRO LEU LEU CYS THR LEU GLU SEQRES 9 D 106 LYS ALA HET ZN A 210 1 HET YBT A 211 15 HET YBT A 212 15 HET GOL A 213 6 HET CL B 143 1 HET ZN B 211 1 HET YBT B 212 15 HET YBT B 213 15 HET GOL B 214 6 HET GOL B 215 6 HET YBT D 107 15 HETNAM ZN ZINC ION HETNAM YBT BIS-(2-HYDROXYETHYL)AMINO-TRIS(HYDROXYMETHYL)METHANE HETNAM 2 YBT YTTRIUM HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 ZN 2(ZN 2+) FORMUL 6 YBT 5(C8 H19 N O5 Y) FORMUL 8 GOL 3(C3 H8 O3) FORMUL 9 CL CL 1- FORMUL 16 HOH *184(H2 O) HELIX 1 1 ASN A 3 HIS A 20 1 18 HELIX 2 2 THR A 26 LEU A 35 1 10 HELIX 3 3 ASN A 37 CYS A 47 1 11 HELIX 4 4 ASP A 50 THR A 66 1 17 HELIX 5 5 THR A 81 SER A 98 1 18 HELIX 6 6 THR A 104 PHE A 113 1 10 HELIX 7 7 SER A 118 HIS A 127 1 10 HELIX 8 8 SER A 130 GLY A 141 1 12 HELIX 9 9 ASN B 3 HIS B 20 1 18 HELIX 10 10 THR B 26 LEU B 35 1 10 HELIX 11 11 ASN B 37 ALA B 46 1 10 HELIX 12 12 ASP B 50 THR B 66 1 17 HELIX 13 13 THR B 81 SER B 98 1 18 HELIX 14 14 THR B 104 PHE B 113 1 10 HELIX 15 15 SER B 118 HIS B 127 1 10 HELIX 16 16 SER B 130 GLY B 141 1 12 HELIX 17 17 PRO C 39 SER C 52 1 14 HELIX 18 18 ASP C 54 GLY C 69 1 16 HELIX 19 19 ALA C 78 ASN C 95 1 18 HELIX 20 20 PRO D 39 SER D 52 1 14 HELIX 21 21 ASP D 54 GLY D 69 1 16 HELIX 22 22 ALA D 78 ASN D 95 1 18 SHEET 1 A 2 PHE A 24 MET A 25 0 SHEET 2 A 2 GLN A 79 PRO A 80 1 O GLN A 79 N MET A 25 SHEET 1 B 2 PHE B 24 MET B 25 0 SHEET 2 B 2 GLN B 79 PRO B 80 1 O GLN B 79 N MET B 25 SHEET 1 C 3 LYS C 70 THR C 77 0 SHEET 2 C 3 MET C 27 VAL C 33 -1 N TYR C 28 O PHE C 76 SHEET 3 C 3 LEU C 100 LYS C 105 -1 O THR C 102 N ILE C 31 SHEET 1 D 3 LYS D 70 THR D 77 0 SHEET 2 D 3 MET D 27 VAL D 33 -1 N TYR D 28 O PHE D 76 SHEET 3 D 3 LEU D 100 LYS D 105 -1 O THR D 102 N ILE D 31 LINK NE2 HIS A 22 ZN ZN A 210 1555 1555 2.04 LINK OE2 GLU A 63 ZN ZN A 210 1555 1555 2.26 LINK ND1 HIS B 20 ZN ZN B 211 1555 1555 2.23 LINK NE2 HIS B 22 ZN ZN B 211 1555 1555 2.09 LINK OE2 GLU B 63 ZN ZN B 211 1555 1555 2.06 SITE 1 AC1 5 ASN B 3 LEU B 6 ASN B 37 THR B 104 SITE 2 AC1 5 GLY B 105 SITE 1 AC2 4 HIS A 20 HIS A 22 GLU A 63 HOH A 214 SITE 1 AC3 4 HIS B 20 HIS B 22 GLU B 63 HOH B 216 SITE 1 AC4 7 ASN B 3 GLN B 4 GLU B 5 GLU B 102 SITE 2 AC4 7 HOH B 250 HOH B 262 GLU C 41 SITE 1 AC5 5 ARG A 41 GLU A 42 GLU A 45 HOH A 215 SITE 2 AC5 5 HOH A 253 SITE 1 AC6 6 ARG B 41 GLU B 42 GLU B 45 HOH B 218 SITE 2 AC6 6 HOH B 241 HOH B 272 SITE 1 AC7 5 MET A 1 GLU A 7 ASP D 54 GLU D 56 SITE 2 AC7 5 HOH D 140 SITE 1 AC8 9 GLU A 19 ASN D 34 ASP D 35 ASP D 36 SITE 2 AC8 9 TYR D 37 THR D 38 MET D 40 MET D 62 SITE 3 AC8 9 HIS D 66 SITE 1 AC9 3 GLU A 117 HOH A 260 HOH C 113 SITE 1 BC1 3 GLU B 117 HOH B 231 HOH B 242 SITE 1 BC2 2 GLU B 128 ASP B 133 CRYST1 87.436 87.436 212.955 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011437 0.006603 0.000000 0.00000 SCALE2 0.000000 0.013206 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004696 0.00000 MASTER 422 0 11 22 10 0 18 6 0 0 0 40 END