HEADER ANTIMICROBIAL PROTEIN 31-JUL-02 1MA5 TITLE TACHYPLESIN I SOLUTION STRUCTURE IN THE PRESENCE OF 300MM TITLE 2 DODECYLPHOSPHOCHOLINE MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: TACHYPLESIN 1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED SOURCE 4 USING FMOC SOLID STATE SYNTHESIS. THE SEQUENCE OF THE SOURCE 5 PEPTIDE IS NATURALLY FOUND IN TACHYPLEUS TRIDENTATUS SOURCE 6 (JAPANESE HORESHOE CRAB). KEYWDS TACHYPLESIN I, BETA HAIRPIN, DODECYLPHOSPHOCHOLINE, KEYWDS 2 CONFORMATIONAL REARRANGEMENT, ANTIMICROBIAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 31 MDLTYP MINIMIZED AVERAGE AUTHOR A.LAEDERACH,A.H.ANDREOTTI,D.B.FULTON REVDAT 2 24-FEB-09 1MA5 1 VERSN REVDAT 1 16-OCT-02 1MA5 0 JRNL AUTH A.LAEDERACH,A.H.ANDREOTTI,D.B.FULTON JRNL TITL SOLUTION AND MICELLE-BOUND STRUCTURES OF JRNL TITL 2 TACHYPLESIN I AND ITS ACTIVE LINEAR DERIVATIVES JRNL REF BIOCHEMISTRY V. 41 12359 2002 JRNL REFN ISSN 0006-2960 JRNL PMID 12369825 JRNL DOI 10.1021/BI026185Z REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, DELANO, GROS, GROSSE- REMARK 3 KUNSTLEVE, JIANG, KUSZEWSKI, NILGES, PANNU, REMARK 3 READ, RICE, SIMONSON, WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MA5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-02. REMARK 100 THE RCSB ID CODE IS RCSB016787. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 3.0 REMARK 210 IONIC STRENGTH : 0.15% REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : TACHYPLESIN I 0.5 MM 300 MM REMARK 210 DEUTERATED REMARK 210 DODECYLPHOSPHOCHOLINE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.0, XWINNMR 6.1 REMARK 210 METHOD USED : SIMULATED ANNEALING WITH REMARK 210 COMPLETE CROSS-VALIDATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 300 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 31 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES. A TEMPERATURE OF 313K WAS USED TO REMARK 210 IMPROVE CHEMICAL SHIFT DISPERSION. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TRP A 2 -154.85 -83.68 REMARK 500 1 PHE A 4 -3.86 169.23 REMARK 500 1 ARG A 5 43.17 38.14 REMARK 500 1 ARG A 9 36.89 35.23 REMARK 500 1 ILE A 11 -178.75 172.84 REMARK 500 1 ARG A 14 97.77 -55.49 REMARK 500 1 ARG A 15 50.59 179.21 REMARK 500 2 PHE A 4 -63.54 -178.01 REMARK 500 2 ARG A 5 45.92 154.01 REMARK 500 2 TYR A 8 -176.06 171.69 REMARK 500 2 ARG A 9 52.90 15.94 REMARK 500 2 ILE A 11 -169.64 80.79 REMARK 500 2 TYR A 13 25.81 -147.53 REMARK 500 2 ARG A 14 92.80 33.84 REMARK 500 2 ARG A 15 156.70 176.65 REMARK 500 3 TRP A 2 45.22 21.85 REMARK 500 3 CYS A 3 -71.05 95.25 REMARK 500 3 CYS A 7 56.26 76.12 REMARK 500 3 TYR A 8 171.08 175.00 REMARK 500 3 ARG A 9 21.66 47.23 REMARK 500 3 CYS A 12 77.05 -66.99 REMARK 500 3 ARG A 15 -78.14 -149.34 REMARK 500 3 CYS A 16 136.86 -26.17 REMARK 500 4 PHE A 4 -102.66 56.24 REMARK 500 4 ARG A 5 30.57 -145.60 REMARK 500 4 CYS A 7 86.65 -41.09 REMARK 500 4 TYR A 8 162.71 164.47 REMARK 500 4 ARG A 9 77.11 1.32 REMARK 500 4 ARG A 14 178.76 41.38 REMARK 500 5 CYS A 3 -53.96 -25.52 REMARK 500 5 PHE A 4 -32.00 179.45 REMARK 500 5 ARG A 5 115.96 62.87 REMARK 500 5 CYS A 7 44.15 93.37 REMARK 500 5 ARG A 9 38.83 31.46 REMARK 500 5 ILE A 11 -178.42 177.94 REMARK 500 5 TYR A 13 -154.08 -63.48 REMARK 500 5 ARG A 14 109.20 162.69 REMARK 500 5 ARG A 15 78.64 110.03 REMARK 500 5 CYS A 16 -80.46 -69.59 REMARK 500 6 TRP A 2 -81.08 -53.01 REMARK 500 6 VAL A 6 -104.15 -77.16 REMARK 500 6 TYR A 8 176.61 49.70 REMARK 500 6 ARG A 9 34.73 34.28 REMARK 500 6 ILE A 11 -104.49 -178.04 REMARK 500 6 CYS A 12 62.64 168.35 REMARK 500 6 ARG A 14 -165.64 44.61 REMARK 500 6 CYS A 16 -77.11 -100.83 REMARK 500 7 TRP A 2 89.23 -62.38 REMARK 500 7 CYS A 3 -76.06 -103.73 REMARK 500 7 ARG A 5 32.09 -89.58 REMARK 500 7 CYS A 7 66.18 -66.36 REMARK 500 7 TYR A 8 -94.42 175.01 REMARK 500 7 ARG A 9 79.23 -62.40 REMARK 500 7 ILE A 11 -168.20 45.82 REMARK 500 7 TYR A 13 44.31 -172.24 REMARK 500 7 ARG A 14 110.59 -34.05 REMARK 500 7 ARG A 15 73.09 -160.18 REMARK 500 8 TRP A 2 155.15 62.37 REMARK 500 8 CYS A 3 -68.99 178.79 REMARK 500 8 PHE A 4 35.74 -166.22 REMARK 500 8 CYS A 7 129.41 -35.50 REMARK 500 8 TYR A 8 -175.53 82.85 REMARK 500 8 ARG A 9 37.26 37.56 REMARK 500 8 TYR A 13 54.21 -153.11 REMARK 500 8 ARG A 15 -91.57 -178.52 REMARK 500 8 CYS A 16 -92.97 43.91 REMARK 500 9 TRP A 2 -43.26 -164.03 REMARK 500 9 CYS A 3 -79.68 -134.19 REMARK 500 9 PHE A 4 -48.78 -147.09 REMARK 500 9 ARG A 5 89.14 4.94 REMARK 500 9 VAL A 6 -167.41 -54.22 REMARK 500 9 CYS A 7 87.28 -19.39 REMARK 500 9 TYR A 8 -86.46 -177.33 REMARK 500 9 ARG A 9 70.13 -48.27 REMARK 500 9 ILE A 11 -177.24 166.68 REMARK 500 9 CYS A 12 -158.56 -106.71 REMARK 500 9 TYR A 13 152.03 107.00 REMARK 500 9 ARG A 15 -82.13 -126.36 REMARK 500 9 CYS A 16 -89.05 20.16 REMARK 500 10 TRP A 2 -165.25 -68.89 REMARK 500 10 PHE A 4 97.96 85.42 REMARK 500 10 ARG A 5 49.62 -90.97 REMARK 500 10 VAL A 6 -178.92 47.49 REMARK 500 10 CYS A 7 59.21 19.86 REMARK 500 10 TYR A 8 170.77 174.38 REMARK 500 10 ARG A 9 26.49 43.57 REMARK 500 10 ILE A 11 -172.38 -174.17 REMARK 500 10 ARG A 14 94.28 -66.38 REMARK 500 10 ARG A 15 70.06 179.87 REMARK 500 11 TRP A 2 -81.74 63.52 REMARK 500 11 CYS A 3 -89.65 43.27 REMARK 500 11 PHE A 4 48.09 -164.13 REMARK 500 11 ARG A 5 56.63 81.55 REMARK 500 11 VAL A 6 -139.31 -111.87 REMARK 500 11 TYR A 8 -136.86 72.21 REMARK 500 11 ARG A 9 89.55 -39.29 REMARK 500 11 ILE A 11 -100.36 -179.71 REMARK 500 11 CYS A 12 62.81 176.25 REMARK 500 11 ARG A 15 -91.47 -159.08 REMARK 500 11 CYS A 16 61.85 31.69 REMARK 500 12 CYS A 3 122.55 177.43 REMARK 500 12 PHE A 4 -165.30 54.22 REMARK 500 12 VAL A 6 162.47 -40.77 REMARK 500 12 CYS A 7 143.23 74.23 REMARK 500 12 TYR A 8 173.50 97.27 REMARK 500 12 ARG A 9 37.71 35.30 REMARK 500 12 ILE A 11 -89.25 -173.06 REMARK 500 12 ARG A 14 26.65 -151.13 REMARK 500 12 ARG A 15 122.38 170.22 REMARK 500 13 CYS A 3 -57.76 69.60 REMARK 500 13 ARG A 5 35.45 37.73 REMARK 500 13 VAL A 6 77.77 -109.22 REMARK 500 13 CYS A 7 44.30 83.45 REMARK 500 13 ARG A 9 -85.68 33.59 REMARK 500 13 ILE A 11 -174.08 -177.35 REMARK 500 13 ARG A 14 64.48 -66.59 REMARK 500 13 ARG A 15 -163.49 170.04 REMARK 500 13 CYS A 16 56.88 -145.06 REMARK 500 14 TRP A 2 -163.25 43.38 REMARK 500 14 PHE A 4 -58.50 -140.59 REMARK 500 14 ARG A 5 93.76 47.54 REMARK 500 14 VAL A 6 -174.47 -55.00 REMARK 500 14 CYS A 7 71.97 0.72 REMARK 500 14 TYR A 8 -165.21 177.71 REMARK 500 14 ARG A 9 83.66 -17.52 REMARK 500 14 ILE A 11 -172.94 -170.99 REMARK 500 14 ARG A 15 -157.55 170.22 REMARK 500 14 CYS A 16 -30.23 169.05 REMARK 500 15 CYS A 3 -46.82 173.79 REMARK 500 15 PHE A 4 48.52 -81.86 REMARK 500 15 ARG A 5 36.41 -94.32 REMARK 500 15 CYS A 7 42.27 98.93 REMARK 500 15 TYR A 8 -111.28 -155.43 REMARK 500 15 ARG A 9 89.39 -44.52 REMARK 500 15 ILE A 11 -174.15 162.39 REMARK 500 15 CYS A 12 86.53 -67.22 REMARK 500 15 ARG A 14 96.37 -163.99 REMARK 500 15 ARG A 15 -78.11 -175.58 REMARK 500 16 TRP A 2 -170.75 -55.82 REMARK 500 16 CYS A 7 105.19 -29.89 REMARK 500 16 TYR A 8 177.69 107.87 REMARK 500 16 ARG A 9 38.52 33.94 REMARK 500 16 TYR A 13 -164.61 -112.16 REMARK 500 16 ARG A 15 -86.42 -177.09 REMARK 500 16 CYS A 16 -92.03 45.18 REMARK 500 17 CYS A 3 -79.56 -135.37 REMARK 500 17 CYS A 7 77.74 108.12 REMARK 500 17 TYR A 8 -104.85 -179.26 REMARK 500 17 ARG A 9 83.82 -61.01 REMARK 500 17 ILE A 11 -167.78 69.17 REMARK 500 17 TYR A 13 -67.15 74.56 REMARK 500 17 ARG A 14 176.62 48.08 REMARK 500 18 CYS A 3 -72.52 -133.84 REMARK 500 18 PHE A 4 -120.52 -68.76 REMARK 500 18 ARG A 5 -175.32 49.99 REMARK 500 18 VAL A 6 113.06 174.08 REMARK 500 18 CYS A 7 70.56 67.63 REMARK 500 18 TYR A 8 -73.78 -178.22 REMARK 500 18 ARG A 9 78.40 -48.64 REMARK 500 18 ILE A 11 -179.73 163.96 REMARK 500 18 ARG A 14 64.51 -177.40 REMARK 500 18 ARG A 15 81.73 -166.33 REMARK 500 19 CYS A 3 66.32 -178.75 REMARK 500 19 PHE A 4 29.31 44.78 REMARK 500 19 CYS A 7 48.22 75.95 REMARK 500 19 TYR A 8 176.08 174.73 REMARK 500 19 ARG A 9 48.03 22.23 REMARK 500 19 ARG A 14 93.76 -22.33 REMARK 500 19 ARG A 15 -82.59 175.09 REMARK 500 20 CYS A 3 -74.00 -39.66 REMARK 500 20 PHE A 4 -29.64 176.36 REMARK 500 20 ARG A 5 -158.29 -147.30 REMARK 500 20 VAL A 6 -166.72 87.14 REMARK 500 20 TYR A 8 173.28 55.07 REMARK 500 20 ARG A 9 39.85 28.55 REMARK 500 20 ILE A 11 -90.72 -177.43 REMARK 500 20 CYS A 12 48.40 -176.05 REMARK 500 20 ARG A 14 99.25 -44.69 REMARK 500 20 ARG A 15 -164.60 176.44 REMARK 500 20 CYS A 16 156.41 174.26 REMARK 500 21 PHE A 4 -3.45 -164.42 REMARK 500 21 VAL A 6 -142.87 -86.25 REMARK 500 21 CYS A 7 130.31 -26.92 REMARK 500 21 TYR A 8 -75.30 73.75 REMARK 500 21 ARG A 9 75.86 -51.79 REMARK 500 21 ILE A 11 -164.11 161.23 REMARK 500 21 TYR A 13 35.53 -149.83 REMARK 500 21 ARG A 14 127.04 -15.86 REMARK 500 21 ARG A 15 94.78 165.36 REMARK 500 22 CYS A 3 69.98 -103.47 REMARK 500 22 VAL A 6 50.37 -148.95 REMARK 500 22 CYS A 7 136.21 179.44 REMARK 500 22 TYR A 8 -138.97 72.84 REMARK 500 22 ARG A 9 84.07 -39.37 REMARK 500 22 ILE A 11 -136.39 -158.38 REMARK 500 22 CYS A 12 90.61 166.16 REMARK 500 22 ARG A 14 95.32 42.13 REMARK 500 22 ARG A 15 59.01 167.21 REMARK 500 22 CYS A 16 34.64 -171.20 REMARK 500 23 TRP A 2 -94.77 -45.02 REMARK 500 23 CYS A 3 149.05 176.64 REMARK 500 23 ARG A 5 148.11 169.21 REMARK 500 23 VAL A 6 86.56 170.05 REMARK 500 23 CYS A 7 39.99 32.88 REMARK 500 23 TYR A 8 171.95 171.94 REMARK 500 23 ARG A 9 37.23 32.39 REMARK 500 23 ARG A 14 49.81 -99.91 REMARK 500 23 ARG A 15 -85.32 -154.70 REMARK 500 23 CYS A 16 -100.89 54.74 REMARK 500 24 TRP A 2 -145.61 76.06 REMARK 500 24 CYS A 3 139.91 -19.40 REMARK 500 24 PHE A 4 149.41 85.95 REMARK 500 24 ARG A 9 35.31 39.80 REMARK 500 24 ILE A 11 127.52 177.98 REMARK 500 24 ARG A 14 79.38 -171.13 REMARK 500 24 ARG A 15 73.36 169.32 REMARK 500 25 CYS A 3 102.92 64.77 REMARK 500 25 PHE A 4 -18.11 171.93 REMARK 500 25 ARG A 5 72.28 62.60 REMARK 500 25 CYS A 7 72.33 67.73 REMARK 500 25 TYR A 8 -157.36 -178.59 REMARK 500 25 ILE A 11 -177.44 -175.33 REMARK 500 25 CYS A 12 91.00 -68.45 REMARK 500 25 ARG A 14 27.18 -153.46 REMARK 500 26 PHE A 4 -76.17 -160.43 REMARK 500 26 ARG A 5 26.66 178.33 REMARK 500 26 VAL A 6 57.09 -178.70 REMARK 500 26 TYR A 8 -70.65 68.82 REMARK 500 26 ARG A 9 66.61 -52.95 REMARK 500 26 ILE A 11 -169.37 178.71 REMARK 500 26 CYS A 12 144.43 178.71 REMARK 500 26 ARG A 15 -76.18 -130.72 REMARK 500 26 CYS A 16 -87.79 50.80 REMARK 500 27 CYS A 3 57.50 179.27 REMARK 500 27 PHE A 4 33.29 70.88 REMARK 500 27 ARG A 5 77.24 34.55 REMARK 500 27 VAL A 6 -86.09 -118.60 REMARK 500 27 TYR A 8 -111.43 153.89 REMARK 500 27 ARG A 9 108.46 -26.80 REMARK 500 27 ARG A 14 93.44 -52.12 REMARK 500 27 ARG A 15 -88.47 -172.15 REMARK 500 27 CYS A 16 -93.62 40.52 REMARK 500 28 CYS A 3 -68.73 67.86 REMARK 500 28 PHE A 4 -33.32 174.22 REMARK 500 28 ARG A 5 125.65 168.05 REMARK 500 28 TYR A 8 179.35 73.40 REMARK 500 28 ILE A 11 -159.00 -157.22 REMARK 500 28 ARG A 14 76.77 -61.55 REMARK 500 28 ARG A 15 -96.22 -162.51 REMARK 500 28 CYS A 16 84.67 42.99 REMARK 500 29 TRP A 2 -158.84 43.94 REMARK 500 29 ARG A 5 60.18 -113.60 REMARK 500 29 VAL A 6 71.58 -63.93 REMARK 500 29 TYR A 8 -176.21 178.77 REMARK 500 29 ARG A 9 34.51 37.24 REMARK 500 29 ARG A 14 48.05 -155.96 REMARK 500 29 ARG A 15 132.15 -179.99 REMARK 500 30 TRP A 2 -72.02 -94.87 REMARK 500 30 CYS A 3 122.34 179.68 REMARK 500 30 PHE A 4 -44.65 90.03 REMARK 500 30 ARG A 9 36.97 34.63 REMARK 500 30 ILE A 11 -169.68 179.31 REMARK 500 30 ARG A 15 87.44 167.10 REMARK 500 31 TRP A 2 -111.14 -178.85 REMARK 500 31 ARG A 5 81.78 47.18 REMARK 500 31 VAL A 6 166.55 173.14 REMARK 500 31 CYS A 7 88.48 -57.45 REMARK 500 31 ARG A 9 -161.10 39.06 REMARK 500 31 CYS A 12 95.73 -69.21 REMARK 500 31 ARG A 15 -85.53 171.56 REMARK 500 31 CYS A 16 -163.76 51.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MA2 RELATED DB: PDB REMARK 900 TACHYPLESIN I SOLUTION STRUCTURE IN WATER REMARK 900 RELATED ID: 1MA4 RELATED DB: PDB REMARK 900 TPY4 TYROSINE MUTANT OF TACHYPLESIN I IN WATER REMARK 900 RELATED ID: 1MA6 RELATED DB: PDB REMARK 900 TPY4 TACHYPLESIN I TYROSINE MUTANT IN THE PRESENCE OF REMARK 900 DODECYLPHOSPHOCHOLINE MICELLES DBREF 1MA5 A 1 17 UNP P14213 TAC1_TACTR 24 40 SEQRES 1 A 17 LYS TRP CYS PHE ARG VAL CYS TYR ARG GLY ILE CYS TYR SEQRES 2 A 17 ARG ARG CYS ARG SSBOND 1 CYS A 3 CYS A 16 1555 1555 2.03 SSBOND 2 CYS A 7 CYS A 12 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 350 0 0 0 0 0 0 6 0 0 0 2 END