HEADER OXIDOREDUCTASE 12-JUL-02 1M66 TITLE CRYSTAL STRUCTURE OF LEISHMANIA MEXICANA GPDH COMPLEXED WITH INHIBITOR TITLE 2 2-BROMO-6-CHLORO-PURINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCEROL-3-PHOSPHATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GPDH, L-GLYCEROL-3-PHOSPHATE DEHYDROGENASE; COMPND 5 EC: 1.1.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MEXICANA; SOURCE 3 ORGANISM_TAXID: 5665; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS NAD-BINDING MOTIF, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.CHOE,S.SURESH,G.WISEDCHAISRI,K.J.KENNEDY,M.H.GELB,W.G.J.HOL REVDAT 3 13-JUL-11 1M66 1 VERSN REVDAT 2 24-FEB-09 1M66 1 VERSN REVDAT 1 11-DEC-02 1M66 0 JRNL AUTH J.CHOE,S.SURESH,G.WISEDCHAISRI,K.J.KENNEDY,M.H.GELB, JRNL AUTH 2 W.G.J.HOL JRNL TITL ANOMALOUS DIFFERENCES OF LIGHT ELEMENTS IN DETERMINING JRNL TITL 2 PRECISE BINDING MODES OF LIGANDS TO GLYCEROL-3-PHOSPHATE JRNL TITL 3 DEHYDROGENASE JRNL REF CHEM.BIOL. V. 9 1189 2002 JRNL REFN ISSN 1074-5521 JRNL PMID 12445769 JRNL DOI 10.1016/S1074-5521(02)00243-0 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 39121 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2076 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2025 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2605 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.77000 REMARK 3 B22 (A**2) : 0.77000 REMARK 3 B33 (A**2) : -1.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.130 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.908 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2683 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3617 ; 1.458 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 344 ; 3.273 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 501 ;15.836 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 424 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1942 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1349 ; 0.223 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 290 ; 0.209 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 92 ; 0.305 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 40 ; 0.266 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1708 ; 1.017 ; 1.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2733 ; 1.882 ; 1.500 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 975 ; 2.707 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 884 ; 4.415 ; 3.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1M66 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUL-02. REMARK 100 THE RCSB ID CODE IS RCSB016647. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-01 REMARK 200 TEMPERATURE (KELVIN) : 125 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.77 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41197 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 12.900 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA CITRATE, TEA, DTT, EDTA, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.39700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.17800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.17800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.69850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.17800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.17800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 158.09550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.17800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.17800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.69850 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.17800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.17800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 158.09550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 105.39700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 7840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 LYS A 4 REMARK 465 GLN A 5 REMARK 465 HIS A 6 REMARK 465 SER A 7 REMARK 465 ALA A 8 REMARK 465 THR A 294 REMARK 465 SER A 295 REMARK 465 LYS A 296 REMARK 465 ARG A 358 REMARK 465 SER A 359 REMARK 465 ALA A 360 REMARK 465 SER A 361 REMARK 465 THR A 362 REMARK 465 PRO A 363 REMARK 465 SER A 364 REMARK 465 LYS A 365 REMARK 465 LEU A 366 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 684 O HOH A 697 1.73 REMARK 500 O HOH A 578 O HOH A 590 1.80 REMARK 500 O HOH A 599 O HOH A 700 1.93 REMARK 500 O1 PLM A 402 O HOH A 704 2.00 REMARK 500 O HOH A 616 O HOH A 681 2.03 REMARK 500 CE LYS A 125 O HOH A 802 2.04 REMARK 500 O HOH A 643 O HOH A 817 2.05 REMARK 500 O HOH A 527 O HOH A 686 2.14 REMARK 500 O HOH A 579 O HOH A 683 2.16 REMARK 500 O HOH A 571 O HOH A 769 2.16 REMARK 500 OE1 GLU A 40 O HOH A 703 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 594 O HOH A 626 7555 1.82 REMARK 500 O HOH A 590 O HOH A 674 5655 2.01 REMARK 500 CD2 LEU A 261 CD2 LEU A 261 7555 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 189 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 64 56.96 -142.28 REMARK 500 GLN A 292 92.42 -57.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 610 DISTANCE = 5.65 ANGSTROMS REMARK 525 HOH A 681 DISTANCE = 5.56 ANGSTROMS REMARK 525 HOH A 710 DISTANCE = 5.38 ANGSTROMS REMARK 525 HOH A 714 DISTANCE = 6.63 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLM A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EVY RELATED DB: PDB REMARK 900 1EVY IS APO LMGPDH STRUCTURE REMARK 900 RELATED ID: 1EVZ RELATED DB: PDB REMARK 900 1EVZ IS LMGPDH : NADH BINARY COMPLEX STRUCTURE REMARK 900 RELATED ID: 1M67 RELATED DB: PDB REMARK 900 1M67 IS THE CRYSTAL STRUCTURE OF LEISHMANIA MEXICANA GPDH REMARK 900 COMPLEXED WITH INHIBITOR 2-BROMO-6-HYDROXY-PURINE DBREF 1M66 A 1 366 UNP P90551 P90551_LEIME 1 366 SEQRES 1 A 366 MET SER THR LYS GLN HIS SER ALA LYS ASP GLU LEU LEU SEQRES 2 A 366 TYR LEU ASN LYS ALA VAL VAL PHE GLY SER GLY ALA PHE SEQRES 3 A 366 GLY THR ALA LEU ALA MET VAL LEU SER LYS LYS CYS ARG SEQRES 4 A 366 GLU VAL CYS VAL TRP HIS MET ASN GLU GLU GLU VAL ARG SEQRES 5 A 366 LEU VAL ASN GLU LYS ARG GLU ASN VAL LEU PHE LEU LYS SEQRES 6 A 366 GLY VAL GLN LEU ALA SER ASN ILE THR PHE THR SER ASP SEQRES 7 A 366 VAL GLU LYS ALA TYR ASN GLY ALA GLU ILE ILE LEU PHE SEQRES 8 A 366 VAL ILE PRO THR GLN PHE LEU ARG GLY PHE PHE GLU LYS SEQRES 9 A 366 SER GLY GLY ASN LEU ILE ALA TYR ALA LYS GLU LYS GLN SEQRES 10 A 366 VAL PRO VAL LEU VAL CYS THR LYS GLY ILE GLU ARG SER SEQRES 11 A 366 THR LEU LYS PHE PRO ALA GLU ILE ILE GLY GLU PHE LEU SEQRES 12 A 366 PRO SER PRO LEU LEU SER VAL LEU ALA GLY PRO SER PHE SEQRES 13 A 366 ALA ILE GLU VAL ALA THR GLY VAL PHE THR CYS VAL SER SEQRES 14 A 366 ILE ALA SER ALA ASP ILE ASN VAL ALA ARG ARG LEU GLN SEQRES 15 A 366 ARG ILE MET SER THR GLY ASP ARG SER PHE VAL CYS TRP SEQRES 16 A 366 ALA THR THR ASP THR VAL GLY CYS GLU VAL ALA SER ALA SEQRES 17 A 366 VAL LYS ASN VAL LEU ALA ILE GLY SER GLY VAL ALA ASN SEQRES 18 A 366 GLY LEU GLY MET GLY LEU ASN ALA ARG ALA ALA LEU ILE SEQRES 19 A 366 MET ARG GLY LEU LEU GLU ILE ARG ASP LEU THR ALA ALA SEQRES 20 A 366 LEU GLY GLY ASP GLY SER ALA VAL PHE GLY LEU ALA GLY SEQRES 21 A 366 LEU GLY ASP LEU GLN LEU THR CYS SER SER GLU LEU SER SEQRES 22 A 366 ARG ASN PHE THR VAL GLY LYS LYS LEU GLY LYS GLY LEU SEQRES 23 A 366 PRO ILE GLU GLU ILE GLN ARG THR SER LYS ALA VAL ALA SEQRES 24 A 366 GLU GLY VAL ALA THR ALA ASP PRO LEU MET ARG LEU ALA SEQRES 25 A 366 LYS GLN LEU LYS VAL LYS MET PRO LEU CYS HIS GLN ILE SEQRES 26 A 366 TYR GLU ILE VAL TYR LYS LYS LYS ASN PRO ARG ASP ALA SEQRES 27 A 366 LEU ALA ASP LEU LEU SER CYS GLY LEU GLN ASP GLU GLY SEQRES 28 A 366 LEU PRO PRO LEU PHE LYS ARG SER ALA SER THR PRO SER SEQRES 29 A 366 LYS LEU HET BCP A 401 22 HET PLM A 402 18 HETNAM BCP 2-BROMO-6-CHLORO-PURINE HETNAM PLM PALMITIC ACID FORMUL 2 BCP C5 H2 BR CL N4 FORMUL 3 PLM C16 H32 O2 FORMUL 4 HOH *310(H2 O) HELIX 1 1 GLY A 24 SER A 35 1 12 HELIX 2 2 ASN A 47 ARG A 58 1 12 HELIX 3 3 ASP A 78 ASN A 84 1 7 HELIX 4 4 PRO A 94 GLY A 106 1 13 HELIX 5 5 GLY A 106 GLN A 117 1 12 HELIX 6 6 PHE A 134 GLY A 140 1 7 HELIX 7 7 PRO A 144 PRO A 146 5 3 HELIX 8 8 PHE A 156 THR A 162 1 7 HELIX 9 9 ASP A 174 SER A 186 1 13 HELIX 10 10 ASP A 199 LEU A 223 1 25 HELIX 11 11 GLY A 226 LEU A 248 1 23 HELIX 12 12 GLY A 260 SER A 269 1 10 HELIX 13 13 SER A 273 LYS A 284 1 12 HELIX 14 14 PRO A 287 GLN A 292 1 6 HELIX 15 15 ALA A 299 LYS A 316 1 18 HELIX 16 16 MET A 319 LYS A 331 1 13 HELIX 17 17 ASN A 334 LEU A 343 1 10 SHEET 1 A 8 ILE A 73 THR A 76 0 SHEET 2 A 8 CYS A 38 TRP A 44 1 N VAL A 41 O THR A 74 SHEET 3 A 8 LEU A 15 PHE A 21 1 N ALA A 18 O CYS A 42 SHEET 4 A 8 ILE A 89 PHE A 91 1 O LEU A 90 N PHE A 21 SHEET 5 A 8 VAL A 120 VAL A 122 1 O LEU A 121 N ILE A 89 SHEET 6 A 8 LEU A 148 ALA A 152 1 O SER A 149 N VAL A 122 SHEET 7 A 8 THR A 166 ALA A 171 -1 O ALA A 171 N VAL A 150 SHEET 8 A 8 PHE A 192 THR A 197 1 O TRP A 195 N ILE A 170 SITE 1 AC1 4 TRP A 44 MET A 46 ILE A 93 PHE A 97 SITE 1 AC2 9 PHE A 165 ALA A 229 ARG A 236 ILE A 325 SITE 2 AC2 9 ILE A 328 LEU A 342 HOH A 537 HOH A 704 SITE 3 AC2 9 HOH A 745 CRYST1 70.356 70.356 210.794 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014213 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014213 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004744 0.00000 MASTER 391 0 2 17 8 0 4 6 0 0 0 29 END