HEADER OXIDOREDUCTASE 02-JUL-02 1M41 TITLE CRYSTAL STRUCTURE OF ESCHERICHIA COLI ALKANESULFONATE TITLE 2 MONOOXYGENASE SSUD AT 2.3 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: FMNH2-DEPENDENT ALKANESULFONATE MONOOXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: SSUD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-24A(+) KEYWDS FMNH2-DEPENDENT MONOOXYGENASE, SSUD, TIM-BARREL, SULFATE KEYWDS 2 STARVATION, SULFUR ASSIMILATION, DESULFONATION, KEYWDS 3 ALKANESULFONATE, OXYGENASE, MONOOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR E.EICHHORN,C.A.DAVEY,D.F.SARGENT,T.LEISINGER,T.J.RICHMOND REVDAT 2 24-FEB-09 1M41 1 VERSN REVDAT 1 11-DEC-02 1M41 0 JRNL AUTH E.EICHHORN,C.A.DAVEY,D.F.SARGENT,T.LEISINGER, JRNL AUTH 2 T.J.RICHMOND JRNL TITL CRYSTAL STRUCTURE OF ESCHERICHIA COLI JRNL TITL 2 ALKANESULFONATE MONOOXYGENASE SSUD JRNL REF J.MOL.BIOL. V. 324 457 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 12445781 JRNL DOI 10.1016/S0022-2836(02)01069-0 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 83304 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.400 REMARK 3 FREE R VALUE TEST SET COUNT : 2032 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.38 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7604 REMARK 3 BIN R VALUE (WORKING SET) : 0.3930 REMARK 3 BIN FREE R VALUE : 0.4350 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 2.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 212 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5098 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.49000 REMARK 3 B22 (A**2) : 9.45000 REMARK 3 B33 (A**2) : -3.96000 REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : 0.41 REMARK 3 LOW RESOLUTION CUTOFF (A) : 6.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.44 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.51 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.72 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.16 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.06 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1M41 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-JUL-02. REMARK 100 THE RCSB ID CODE IS RCSB016570. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-01; 30-APR-01 REMARK 200 TEMPERATURE (KELVIN) : 110; 110 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ESRF; ESRF REMARK 200 BEAMLINE : ID14-4; ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795; 0.9797, 0.9795, 0.9322 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL; SI 111 CHANNEL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44511 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.43200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM FORMATE, PH 7, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.60500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.60500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 58.17500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.38000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 58.17500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.38000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 62.60500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 58.17500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 70.38000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 62.60500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 58.17500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 70.38000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE BIOLOGICAL ASSEMBLY IS GENERATED REMARK 300 BY THE TWO FOLD AXIS: -X, Y, -Z+1/2 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 62.60500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 249 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 250 REMARK 465 ASP A 251 REMARK 465 GLU A 252 REMARK 465 THR A 253 REMARK 465 ILE A 254 REMARK 465 ALA A 255 REMARK 465 LYS A 256 REMARK 465 ALA A 257 REMARK 465 GLN A 258 REMARK 465 ALA A 259 REMARK 465 ALA A 260 REMARK 465 PHE A 261 REMARK 465 ALA A 262 REMARK 465 ARG A 263 REMARK 465 THR A 264 REMARK 465 ASP A 265 REMARK 465 SER A 266 REMARK 465 VAL A 267 REMARK 465 GLY A 268 REMARK 465 GLN A 269 REMARK 465 GLN A 270 REMARK 465 ARG A 271 REMARK 465 MET A 272 REMARK 465 ALA A 273 REMARK 465 ALA A 274 REMARK 465 LEU A 275 REMARK 465 HIS A 276 REMARK 465 ASN A 277 REMARK 465 GLY A 278 REMARK 465 LYS A 279 REMARK 465 ARG A 280 REMARK 465 ASP A 281 REMARK 465 ASN A 282 REMARK 465 ASN A 362 REMARK 465 PRO A 363 REMARK 465 GLN A 364 REMARK 465 GLY A 365 REMARK 465 GLU A 366 REMARK 465 ALA A 367 REMARK 465 VAL A 368 REMARK 465 ALA A 369 REMARK 465 ASN A 370 REMARK 465 ASP A 371 REMARK 465 PHE A 372 REMARK 465 ILE A 373 REMARK 465 PRO A 374 REMARK 465 ARG A 375 REMARK 465 LYS A 376 REMARK 465 VAL A 377 REMARK 465 ALA A 378 REMARK 465 GLN A 379 REMARK 465 SER A 380 REMARK 465 ASP B 1250 REMARK 465 ASP B 1251 REMARK 465 GLU B 1252 REMARK 465 THR B 1253 REMARK 465 ILE B 1254 REMARK 465 ALA B 1255 REMARK 465 LYS B 1256 REMARK 465 ALA B 1257 REMARK 465 GLN B 1258 REMARK 465 ALA B 1259 REMARK 465 ALA B 1260 REMARK 465 PHE B 1261 REMARK 465 ALA B 1262 REMARK 465 ARG B 1263 REMARK 465 THR B 1264 REMARK 465 ASP B 1265 REMARK 465 SER B 1266 REMARK 465 VAL B 1267 REMARK 465 GLY B 1268 REMARK 465 GLN B 1269 REMARK 465 GLN B 1270 REMARK 465 ARG B 1271 REMARK 465 MET B 1272 REMARK 465 ALA B 1273 REMARK 465 ALA B 1274 REMARK 465 LEU B 1275 REMARK 465 HIS B 1276 REMARK 465 ASN B 1277 REMARK 465 GLY B 1278 REMARK 465 LYS B 1279 REMARK 465 ARG B 1280 REMARK 465 ASP B 1281 REMARK 465 ASN B 1282 REMARK 465 ASN B 1362 REMARK 465 PRO B 1363 REMARK 465 GLN B 1364 REMARK 465 GLY B 1365 REMARK 465 GLU B 1366 REMARK 465 ALA B 1367 REMARK 465 VAL B 1368 REMARK 465 ALA B 1369 REMARK 465 ASN B 1370 REMARK 465 ASP B 1371 REMARK 465 PHE B 1372 REMARK 465 ILE B 1373 REMARK 465 PRO B 1374 REMARK 465 ARG B 1375 REMARK 465 LYS B 1376 REMARK 465 VAL B 1377 REMARK 465 ALA B 1378 REMARK 465 GLN B 1379 REMARK 465 SER B 1380 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA B 1300 N THR B 1302 2.12 REMARK 500 NH1 ARG A 226 O HOH A 494 2.15 REMARK 500 NH1 ARG B 1024 OE2 GLU B 1335 2.18 REMARK 500 NH1 ARG B 1226 O HOH B 296 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 334 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 LEU B1071 CA - CB - CG ANGL. DEV. = 17.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 6 -161.93 -120.64 REMARK 500 THR A 10 -5.27 -58.17 REMARK 500 SER A 110 -140.06 -133.06 REMARK 500 PRO A 112 -122.50 -78.65 REMARK 500 HIS A 153 -40.66 -133.64 REMARK 500 SER A 179 156.36 -43.54 REMARK 500 GLN A 209 -79.65 -47.68 REMARK 500 SER A 247 -14.92 -24.90 REMARK 500 SER A 286 138.99 -179.62 REMARK 500 PRO A 287 112.20 -24.26 REMARK 500 VAL A 293 -9.63 -59.48 REMARK 500 ARG A 297 55.06 -66.80 REMARK 500 ASP A 307 -169.43 -78.30 REMARK 500 PRO A 309 -31.95 -39.01 REMARK 500 TRP B1006 -156.30 -107.95 REMARK 500 THR B1019 156.27 155.91 REMARK 500 PRO B1079 -71.89 -44.84 REMARK 500 SER B1080 -38.97 -35.74 REMARK 500 SER B1110 -101.66 -75.87 REMARK 500 ASN B1150 84.02 -159.34 REMARK 500 ALA B1165 -176.45 -69.52 REMARK 500 PRO B1172 153.57 -49.21 REMARK 500 SER B1178 -77.82 178.80 REMARK 500 SER B1179 -147.73 39.39 REMARK 500 ASP B1180 -67.39 -131.10 REMARK 500 GLU B1201 -71.14 -58.50 REMARK 500 SER B1247 -2.52 -38.82 REMARK 500 ILE B1285 5.57 -53.85 REMARK 500 PRO B1287 108.61 -46.71 REMARK 500 LEU B1295 4.42 -65.36 REMARK 500 ARG B1297 38.54 -69.38 REMARK 500 REMARK 500 REMARK: NULL DBREF 1M41 A 1 380 UNP P80645 SSUD_ECOLI 1 380 DBREF 1M41 B 1001 1380 UNP P80645 SSUD_ECOLI 1 380 SEQRES 1 A 380 SER LEU ASN MET PHE TRP PHE LEU PRO THR HIS GLY ASP SEQRES 2 A 380 GLY HIS TYR LEU GLY THR GLU GLU GLY SER ARG PRO VAL SEQRES 3 A 380 ASP HIS GLY TYR LEU GLN GLN ILE ALA GLN ALA ALA ASP SEQRES 4 A 380 ARG LEU GLY TYR THR GLY VAL LEU ILE PRO THR GLY ARG SEQRES 5 A 380 SER CYS GLU ASP ALA TRP LEU VAL ALA ALA SER MET ILE SEQRES 6 A 380 PRO VAL THR GLN ARG LEU LYS PHE LEU VAL ALA LEU ARG SEQRES 7 A 380 PRO SER VAL THR SER PRO THR VAL ALA ALA ARG GLN ALA SEQRES 8 A 380 ALA THR LEU ASP ARG LEU SER ASN GLY ARG ALA LEU PHE SEQRES 9 A 380 ASN LEU VAL THR GLY SER ASP PRO GLN GLU LEU ALA GLY SEQRES 10 A 380 ASP GLY VAL PHE LEU ASP HIS SER GLU ARG TYR GLU ALA SEQRES 11 A 380 SER ALA GLU PHE THR GLN VAL TRP ARG ARG LEU LEU GLN SEQRES 12 A 380 ARG GLU THR VAL ASP PHE ASN GLY LYS HIS ILE HIS VAL SEQRES 13 A 380 ARG GLY ALA LYS LEU LEU PHE PRO ALA ILE GLN GLN PRO SEQRES 14 A 380 TYR PRO PRO LEU TYR PHE GLY GLY SER SER ASP VAL ALA SEQRES 15 A 380 GLN GLU LEU ALA ALA GLU GLN VAL ASP LEU TYR LEU THR SEQRES 16 A 380 TRP GLY GLU PRO PRO GLU LEU VAL LYS GLU LYS ILE GLU SEQRES 17 A 380 GLN VAL ARG ALA LYS ALA ALA ALA HIS GLY ARG LYS ILE SEQRES 18 A 380 ARG PHE GLY ILE ARG LEU HIS VAL ILE VAL ARG GLU THR SEQRES 19 A 380 ASN ASP GLU ALA TRP GLN ALA ALA GLU ARG LEU ILE SER SEQRES 20 A 380 HIS LEU ASP ASP GLU THR ILE ALA LYS ALA GLN ALA ALA SEQRES 21 A 380 PHE ALA ARG THR ASP SER VAL GLY GLN GLN ARG MET ALA SEQRES 22 A 380 ALA LEU HIS ASN GLY LYS ARG ASP ASN LEU GLU ILE SER SEQRES 23 A 380 PRO ASN LEU TRP ALA GLY VAL GLY LEU VAL ARG GLY GLY SEQRES 24 A 380 ALA GLY THR ALA LEU VAL GLY ASP GLY PRO THR VAL ALA SEQRES 25 A 380 ALA ARG ILE ASN GLU TYR ALA ALA LEU GLY ILE ASP SER SEQRES 26 A 380 PHE VAL LEU SER GLY TYR PRO HIS LEU GLU GLU ALA TYR SEQRES 27 A 380 ARG VAL GLY GLU LEU LEU PHE PRO LEU LEU ASP VAL ALA SEQRES 28 A 380 ILE PRO GLU ILE PRO GLN PRO GLN PRO LEU ASN PRO GLN SEQRES 29 A 380 GLY GLU ALA VAL ALA ASN ASP PHE ILE PRO ARG LYS VAL SEQRES 30 A 380 ALA GLN SER SEQRES 1 B 380 SER LEU ASN MET PHE TRP PHE LEU PRO THR HIS GLY ASP SEQRES 2 B 380 GLY HIS TYR LEU GLY THR GLU GLU GLY SER ARG PRO VAL SEQRES 3 B 380 ASP HIS GLY TYR LEU GLN GLN ILE ALA GLN ALA ALA ASP SEQRES 4 B 380 ARG LEU GLY TYR THR GLY VAL LEU ILE PRO THR GLY ARG SEQRES 5 B 380 SER CYS GLU ASP ALA TRP LEU VAL ALA ALA SER MET ILE SEQRES 6 B 380 PRO VAL THR GLN ARG LEU LYS PHE LEU VAL ALA LEU ARG SEQRES 7 B 380 PRO SER VAL THR SER PRO THR VAL ALA ALA ARG GLN ALA SEQRES 8 B 380 ALA THR LEU ASP ARG LEU SER ASN GLY ARG ALA LEU PHE SEQRES 9 B 380 ASN LEU VAL THR GLY SER ASP PRO GLN GLU LEU ALA GLY SEQRES 10 B 380 ASP GLY VAL PHE LEU ASP HIS SER GLU ARG TYR GLU ALA SEQRES 11 B 380 SER ALA GLU PHE THR GLN VAL TRP ARG ARG LEU LEU GLN SEQRES 12 B 380 ARG GLU THR VAL ASP PHE ASN GLY LYS HIS ILE HIS VAL SEQRES 13 B 380 ARG GLY ALA LYS LEU LEU PHE PRO ALA ILE GLN GLN PRO SEQRES 14 B 380 TYR PRO PRO LEU TYR PHE GLY GLY SER SER ASP VAL ALA SEQRES 15 B 380 GLN GLU LEU ALA ALA GLU GLN VAL ASP LEU TYR LEU THR SEQRES 16 B 380 TRP GLY GLU PRO PRO GLU LEU VAL LYS GLU LYS ILE GLU SEQRES 17 B 380 GLN VAL ARG ALA LYS ALA ALA ALA HIS GLY ARG LYS ILE SEQRES 18 B 380 ARG PHE GLY ILE ARG LEU HIS VAL ILE VAL ARG GLU THR SEQRES 19 B 380 ASN ASP GLU ALA TRP GLN ALA ALA GLU ARG LEU ILE SER SEQRES 20 B 380 HIS LEU ASP ASP GLU THR ILE ALA LYS ALA GLN ALA ALA SEQRES 21 B 380 PHE ALA ARG THR ASP SER VAL GLY GLN GLN ARG MET ALA SEQRES 22 B 380 ALA LEU HIS ASN GLY LYS ARG ASP ASN LEU GLU ILE SER SEQRES 23 B 380 PRO ASN LEU TRP ALA GLY VAL GLY LEU VAL ARG GLY GLY SEQRES 24 B 380 ALA GLY THR ALA LEU VAL GLY ASP GLY PRO THR VAL ALA SEQRES 25 B 380 ALA ARG ILE ASN GLU TYR ALA ALA LEU GLY ILE ASP SER SEQRES 26 B 380 PHE VAL LEU SER GLY TYR PRO HIS LEU GLU GLU ALA TYR SEQRES 27 B 380 ARG VAL GLY GLU LEU LEU PHE PRO LEU LEU ASP VAL ALA SEQRES 28 B 380 ILE PRO GLU ILE PRO GLN PRO GLN PRO LEU ASN PRO GLN SEQRES 29 B 380 GLY GLU ALA VAL ALA ASN ASP PHE ILE PRO ARG LYS VAL SEQRES 30 B 380 ALA GLN SER FORMUL 3 HOH *310(H2 O) HELIX 1 1 ASP A 27 GLY A 42 1 16 HELIX 2 2 ASP A 56 SER A 63 1 8 HELIX 3 3 THR A 85 SER A 98 1 14 HELIX 4 4 GLU A 114 GLY A 119 5 6 HELIX 5 5 ASP A 123 LEU A 142 1 20 HELIX 6 6 SER A 179 VAL A 190 1 12 HELIX 7 7 PRO A 199 ALA A 216 1 18 HELIX 8 8 THR A 234 SER A 247 1 14 HELIX 9 9 ALA A 291 LEU A 295 5 5 HELIX 10 10 GLY A 308 GLY A 322 1 15 HELIX 11 11 LEU A 334 LEU A 343 1 10 HELIX 12 12 LEU A 344 LEU A 348 5 5 HELIX 13 13 ASP B 1027 GLY B 1042 1 16 HELIX 14 14 ASP B 1056 SER B 1063 1 8 HELIX 15 15 ARG B 1078 THR B 1082 5 5 HELIX 16 16 SER B 1083 SER B 1098 1 16 HELIX 17 17 GLN B 1113 ASP B 1118 1 6 HELIX 18 18 ASP B 1123 LEU B 1142 1 20 HELIX 19 19 ASP B 1180 VAL B 1190 1 11 HELIX 20 20 PRO B 1199 ALA B 1216 1 18 HELIX 21 21 THR B 1234 SER B 1247 1 14 HELIX 22 22 ALA B 1291 VAL B 1296 5 6 HELIX 23 23 GLY B 1308 LEU B 1321 1 14 HELIX 24 24 PRO B 1332 LEU B 1344 1 13 HELIX 25 25 PHE B 1345 LEU B 1348 5 4 SHEET 1 A 9 ASN A 3 PHE A 7 0 SHEET 2 A 9 GLY A 45 ILE A 48 1 O LEU A 47 N TRP A 6 SHEET 3 A 9 LYS A 72 LEU A 77 1 O LEU A 74 N VAL A 46 SHEET 4 A 9 ALA A 102 LEU A 106 1 O ASN A 105 N LEU A 77 SHEET 5 A 9 LEU A 173 PHE A 175 1 O TYR A 174 N LEU A 106 SHEET 6 A 9 LEU A 192 TRP A 196 1 O LEU A 194 N PHE A 175 SHEET 7 A 9 ARG A 222 ARG A 226 1 O ARG A 222 N TYR A 193 SHEET 8 A 9 ILE A 323 VAL A 327 1 O VAL A 327 N ILE A 225 SHEET 9 A 9 ASN A 3 PHE A 7 1 N ASN A 3 O ASP A 324 SHEET 1 B 2 ASP A 13 GLY A 14 0 SHEET 2 B 2 SER A 23 ARG A 24 -1 O ARG A 24 N ASP A 13 SHEET 1 C 2 VAL A 147 ASN A 150 0 SHEET 2 C 2 HIS A 155 ALA A 159 -1 O VAL A 156 N PHE A 149 SHEET 1 D 3 HIS A 228 ARG A 232 0 SHEET 2 D 3 ALA A 303 ASP A 307 1 O LEU A 304 N HIS A 228 SHEET 3 D 3 LEU A 289 TRP A 290 -1 N TRP A 290 O ALA A 303 SHEET 1 E 9 ASN B1003 PHE B1007 0 SHEET 2 E 9 GLY B1045 ILE B1048 1 O LEU B1047 N TRP B1006 SHEET 3 E 9 LYS B1072 LEU B1077 1 O LEU B1074 N VAL B1046 SHEET 4 E 9 ALA B1102 LEU B1106 1 O ASN B1105 N LEU B1077 SHEET 5 E 9 LEU B1173 PHE B1175 1 O TYR B1174 N LEU B1106 SHEET 6 E 9 LEU B1192 TRP B1196 1 O LEU B1194 N PHE B1175 SHEET 7 E 9 ARG B1222 ARG B1226 1 O ARG B1222 N TYR B1193 SHEET 8 E 9 ILE B1323 VAL B1327 1 O ASP B1324 N PHE B1223 SHEET 9 E 9 ASN B1003 PHE B1007 1 N PHE B1005 O PHE B1326 SHEET 1 F 2 ASP B1013 GLY B1014 0 SHEET 2 F 2 SER B1023 ARG B1024 -1 O ARG B1024 N ASP B1013 SHEET 1 G 2 VAL B1147 ASN B1150 0 SHEET 2 G 2 HIS B1155 ALA B1159 -1 O VAL B1156 N PHE B1149 SHEET 1 H 3 HIS B1228 ARG B1232 0 SHEET 2 H 3 ALA B1303 ASP B1307 1 O LEU B1304 N HIS B1228 SHEET 3 H 3 LEU B1289 TRP B1290 -1 N TRP B1290 O ALA B1303 CISPEP 1 ASP A 111 PRO A 112 0 -0.17 CISPEP 2 GLN A 168 PRO A 169 0 -0.12 CISPEP 3 TYR A 331 PRO A 332 0 -0.96 CISPEP 4 ASP B 1111 PRO B 1112 0 -0.04 CISPEP 5 GLN B 1168 PRO B 1169 0 0.10 CISPEP 6 TYR B 1331 PRO B 1332 0 -0.49 CRYST1 116.350 140.760 125.210 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008595 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007104 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007987 0.00000 MASTER 430 0 0 25 32 0 0 6 0 0 0 60 END