HEADER HYDROLASE 13-JUN-02 1M0H TITLE THEORETICAL MODEL OF CATHEPSIN S PRECURSOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATHEPSIN S PRECURSOR; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.22.27 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE KEYWDS HYDROLASE, THIOL PROTEASE, LYSOSOME, ZYMOGEN, SIGNAL EXPDTA THEORETICAL MODEL AUTHOR K.BEESETTI,K.YADUGIRI REVDAT 1 26-JUN-02 1M0H 0 JRNL AUTH K.BEESETTI,K.YADUGIRI JRNL TITL THEORETICAL MODEL OF CATHEPSIN S PRECURSOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: PROTEIN HAS BEEN MODELLED USING REMARK 3 MODELLER IN INSIGHTII, WHICH DOES AUTOMATIC REFINEMENT USING REMARK 3 CONJUGATE GRADIENT AND MOLECULAR SIMULATION. REMARK 4 REMARK 4 1M0H COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUN-2002. REMARK 100 THE RCSB ID CODE IS RCSB016444. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 183 N - CA - C ANGL. DEV. =-17.7 DEGREES REMARK 500 PHE A 241 C - N - CA ANGL. DEV. =-15.0 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 311 164.84 73.27 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ICF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MHC CLASS II ASSOCIATED P41 II REMARK 900 FRAGMENT IN COMPLEX WITH CATHEPSIN L REMARK 900 RELATED ID: 1BY8 RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF HUMAN PROCATHEPSIN K REMARK 900 RELATED ID: 1MEM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CATHEPSIN K COMPLEXED WITH A POTENT REMARK 900 VINYL SULFONE INHIBITOR DBREF 1M0H A 1 340 UNP O70370 CATS_MOUSE 1 340 SEQRES 1 A 340 MET ARG ALA PRO GLY HIS ALA ALA ILE ARG TRP LEU PHE SEQRES 2 A 340 TRP MET PRO LEU VAL CYS SER VAL ALA MET GLU GLN LEU SEQRES 3 A 340 GLN ARG ASP PRO THR LEU ASP TYR HIS TRP ASP LEU TRP SEQRES 4 A 340 LYS LYS THR HIS GLU LYS GLU TYR LYS ASP LYS ASN GLU SEQRES 5 A 340 GLU GLU VAL ARG ARG LEU ILE TRP GLU LYS ASN LEU LYS SEQRES 6 A 340 PHE ILE MET ILE HIS ASN LEU GLU TYR SER MET GLY MET SEQRES 7 A 340 HIS THR TYR GLN VAL GLY MET ASN ASP MET GLY ASP MET SEQRES 8 A 340 THR ASN GLU GLU ILE SER CYS ARG MET GLY ALA LEU ARG SEQRES 9 A 340 ILE SER ARG GLN SER PRO LYS THR VAL THR PHE ARG SER SEQRES 10 A 340 TYR SER ASN ARG THR LEU PRO ASP THR VAL ASP TRP ARG SEQRES 11 A 340 GLU LYS GLY CYS VAL THR GLU VAL LYS TYR GLN GLY SER SEQRES 12 A 340 CYS GLY ALA CYS TRP ALA PHE SER ALA VAL GLY ALA LEU SEQRES 13 A 340 GLU GLY GLN LEU LYS LEU LYS THR GLY LYS LEU ILE SER SEQRES 14 A 340 LEU SER ALA GLN ASN LEU VAL ASP CYS SER ASN GLU GLU SEQRES 15 A 340 LYS TYR GLY ASN LYS GLY CYS GLY GLY GLY TYR MET THR SEQRES 16 A 340 GLU ALA PHE GLN TYR ILE ILE ASP ASN GLY GLY ILE GLU SEQRES 17 A 340 ALA ASP ALA SER TYR PRO TYR LYS ALA THR ASP GLU LYS SEQRES 18 A 340 CYS HIS TYR ASN SER LYS ASN ARG ALA ALA THR CYS SER SEQRES 19 A 340 ARG TYR ILE GLN LEU PRO PHE GLY ASP GLU ASP ALA LEU SEQRES 20 A 340 LYS GLU ALA VAL ALA THR LYS GLY PRO VAL SER VAL GLY SEQRES 21 A 340 ILE ASP ALA SER HIS SER SER PHE PHE PHE TYR LYS SER SEQRES 22 A 340 GLY VAL TYR ASP ASP PRO SER CYS THR GLY ASN VAL ASN SEQRES 23 A 340 HIS GLY VAL LEU VAL VAL GLY TYR GLY THR LEU ASP GLY SEQRES 24 A 340 LYS ASP TYR TRP LEU VAL LYS ASN SER TRP GLY LEU ASN SEQRES 25 A 340 PHE GLY ASP GLN GLY TYR ILE ARG MET ALA ARG ASN ASN SEQRES 26 A 340 LYS ASN HIS CYS GLY ILE ALA SER TYR CYS SER TYR PRO SEQRES 27 A 340 GLU ILE HELIX 1 1 ASP A 29 LYS A 41 1 13 HELIX 2 2 TYR A 47 SER A 75 1 29 HELIX 3 3 ASP A 90 CYS A 98 1 9 HELIX 4 4 TRP A 129 GLY A 133 1 5 HELIX 5 5 ALA A 146 GLY A 165 1 20 HELIX 6 6 SER A 171 SER A 179 1 9 HELIX 7 7 LYS A 187 GLY A 191 5 5 HELIX 8 8 TYR A 193 GLY A 205 1 13 HELIX 9 9 ASN A 225 LYS A 227 5 3 HELIX 10 10 ASP A 243 LYS A 254 1 12 HELIX 11 11 HIS A 265 PHE A 270 1 6 HELIX 12 12 HIS A 328 ALA A 332 5 5 SHEET 1 A 6 HIS A 79 TYR A 81 0 SHEET 2 A 6 TYR A 271 TYR A 276 -1 O SER A 273 N THR A 80 SHEET 3 A 6 ILE A 319 ARG A 323 1 O MET A 321 N TYR A 276 SHEET 4 A 6 ASP A 301 ASN A 307 -1 N LEU A 304 O ALA A 322 SHEET 5 A 6 GLY A 288 ASP A 298 -1 N THR A 296 O TRP A 303 SHEET 6 A 6 VAL A 127 ASP A 128 -1 N VAL A 127 O GLY A 295 SHEET 1 B 6 HIS A 79 TYR A 81 0 SHEET 2 B 6 TYR A 271 TYR A 276 -1 O SER A 273 N THR A 80 SHEET 3 B 6 ILE A 319 ARG A 323 1 O MET A 321 N TYR A 276 SHEET 4 B 6 ASP A 301 ASN A 307 -1 N LEU A 304 O ALA A 322 SHEET 5 B 6 GLY A 288 ASP A 298 -1 N THR A 296 O TRP A 303 SHEET 6 B 6 VAL A 257 ILE A 261 -1 N ILE A 261 O GLY A 288 SHEET 1 C 2 ILE A 207 GLU A 208 0 SHEET 2 C 2 ARG A 229 ALA A 231 -1 O ALA A 230 N ILE A 207 SHEET 1 D 2 ARG A 235 TYR A 236 0 SHEET 2 D 2 GLU A 339 ILE A 340 -1 O ILE A 340 N ARG A 235 SSBOND 1 CYS A 144 CYS A 189 SSBOND 2 CYS A 178 CYS A 222 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 66 0 0 12 16 0 0 6 0 0 0 27 END