HEADER TRANSFERASE 31-MAY-02 1LWJ TITLE CRYSTAL STRUCTURE OF T. MARITIMA 4-ALPHA- TITLE 2 GLUCANOTRANSFERASE/ACARBOSE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-ALPHA-GLUCANOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MALTODEXTRIN GLYCOSYLTRANSFERASE, AMYLOMALTASE, D- COMPND 5 ENZYME, DISPROPORTIONATING ENZYME, OLIGO-1,4-1,4- COMPND 6 GLUCANTRANSFERASE; COMPND 7 EC: 2.4.1.25; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: MGT; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: M5219; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTAM1 KEYWDS 4-ALPHA-GLUCANOTRANSFERASE, ALPHA-AMYLASE FAMILY, KEYWDS 2 THERMOTOGA MARITIMA, ACARBOSE, (BETA/ALPHA)8 BARREL EXPDTA X-RAY DIFFRACTION AUTHOR A.ROUJEINIKOVA,C.RAASCH,S.SEDELNIKOVA,W.LIEBL,D.W.RICE REVDAT 2 24-FEB-09 1LWJ 1 VERSN REVDAT 1 14-AUG-02 1LWJ 0 JRNL AUTH A.ROUJEINIKOVA,C.RAASCH,S.SEDELNIKOVA,W.LIEBL, JRNL AUTH 2 D.W.RICE JRNL TITL CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA JRNL TITL 2 4-ALPHA-GLUCANOTRANSFERASE AND ITS ACARBOSE JRNL TITL 3 COMPLEX: IMPLICATIONS FOR SUBSTRATE SPECIFICITY JRNL TITL 4 AND CATALYSIS JRNL REF J.MOL.BIOL. V. 321 149 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 12139940 JRNL DOI 10.1016/S0022-2836(02)00570-3 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.ROUJEINIKOVA,C.RAASCH,S.SEDELNIKOVA,W.LIEBL, REMARK 1 AUTH 2 D.W.RICE REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY REMARK 1 TITL 2 CRYSTALLOGRAPHIC STUDIES ON REMARK 1 TITL 3 4-ALPHA-GLUCANOTRANSFERASE FROM THERMOTOGA MARITIMA REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 57 1046 2001 REMARK 1 REFN ISSN 0907-4449 REMARK 1 DOI 10.1107/S0907444901007740 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MLF REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 35705 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.302 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7312 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 110 REMARK 3 SOLVENT ATOMS : 41 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.50 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LWJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUL-02. REMARK 100 THE RCSB ID CODE IS RCSB016348. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : TRIANGULAR SINGLE CRYSTAL SI REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39305 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 67.0 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 25.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.22000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1LWH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26-29% PEG 5000, 200-300 MM REMARK 280 AMMONIUM SULPHATE, 3 MM CACL2, 80 MM MES, 40 MM ACARBOSE, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 47.27100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 90.67700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 98.65850 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 47.27100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 90.67700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 98.65850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 47.27100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 90.67700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 98.65850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 47.27100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 90.67700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 98.65850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE DIMER IN THE ASYMMETRIC UNIT IS THE BIOLOGICAL UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 998 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1003 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 57 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 GLU A 122 CG CD OE1 OE2 REMARK 470 GLU A 220 CG CD OE1 OE2 REMARK 470 ARG A 222 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 562 CG CD CE NZ REMARK 470 GLU B 563 CG CD OE1 OE2 REMARK 470 GLU B 661 CG CD OE1 OE2 REMARK 470 ARG B 663 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 166 OD1 ASP A 166 4555 1.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 11 -78.47 -84.54 REMARK 500 PRO A 44 99.08 -11.96 REMARK 500 SER A 50 -179.75 -68.33 REMARK 500 ASP A 55 78.68 -104.21 REMARK 500 ASP A 58 118.76 -169.64 REMARK 500 LYS A 107 41.92 -82.19 REMARK 500 ASP A 109 119.65 -39.81 REMARK 500 GLU A 122 46.48 -94.58 REMARK 500 TRP A 131 -97.57 -89.40 REMARK 500 ASP A 132 -9.37 -59.75 REMARK 500 ASP A 142 35.63 -68.14 REMARK 500 PRO A 162 1.84 -62.38 REMARK 500 ASP A 177 -15.64 -49.75 REMARK 500 SER A 207 -84.03 -25.33 REMARK 500 ASP A 208 56.42 -102.19 REMARK 500 TRP A 218 91.41 -65.74 REMARK 500 ASP A 238 -77.76 -47.95 REMARK 500 GLU A 250 39.61 35.71 REMARK 500 ARG A 253 -79.74 -32.84 REMARK 500 VAL A 263 -58.47 -125.87 REMARK 500 ALA A 265 94.25 45.58 REMARK 500 ASP A 267 2.43 -65.37 REMARK 500 SER A 275 -175.11 -173.71 REMARK 500 GLU A 286 65.90 62.05 REMARK 500 SER A 290 138.53 -23.55 REMARK 500 TYR A 312 125.38 -35.79 REMARK 500 GLU A 343 105.20 -50.97 REMARK 500 PHE A 347 37.99 -170.96 REMARK 500 ALA A 392 150.73 -39.13 REMARK 500 CYS A 398 113.87 -163.93 REMARK 500 LYS A 399 66.85 -116.75 REMARK 500 ASP A 410 -158.73 -148.68 REMARK 500 SER A 414 112.77 -174.66 REMARK 500 PHE B 452 -92.99 -85.89 REMARK 500 PRO B 485 116.03 -24.36 REMARK 500 ASP B 499 132.59 168.90 REMARK 500 LYS B 504 103.56 -49.21 REMARK 500 ALA B 505 -52.90 -24.90 REMARK 500 ASP B 550 120.91 -36.84 REMARK 500 ASP B 565 80.69 -62.04 REMARK 500 ASP B 567 43.45 -102.79 REMARK 500 TRP B 572 -100.64 -72.00 REMARK 500 GLU B 582 -45.44 -22.94 REMARK 500 ASP B 583 57.83 -91.69 REMARK 500 SER B 595 57.50 -142.33 REMARK 500 THR B 693 -10.19 -44.25 REMARK 500 ALA B 706 88.02 45.49 REMARK 500 ASP B 708 41.07 -94.64 REMARK 500 SER B 716 -163.84 -175.73 REMARK 500 GLU B 727 77.40 43.47 REMARK 500 SER B 731 145.12 -32.73 REMARK 500 TYR B 753 128.39 -34.74 REMARK 500 GLN B 764 169.83 176.02 REMARK 500 THR B 768 8.56 -68.57 REMARK 500 CYS B 782 79.47 -160.47 REMARK 500 GLU B 784 120.18 -33.72 REMARK 500 PHE B 788 44.01 -165.13 REMARK 500 ASP B 851 -155.21 -145.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 883 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 15 OD1 REMARK 620 2 ASP A 21 OD2 81.1 REMARK 620 3 ASP A 17 OD2 89.0 168.7 REMARK 620 4 ASP A 13 OD1 76.3 75.4 107.8 REMARK 620 5 VAL A 19 O 143.7 80.2 111.1 68.9 REMARK 620 6 ASP A 17 OD1 83.5 137.3 45.8 62.3 89.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 10 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 454 OD1 REMARK 620 2 ASN B 456 OD1 71.1 REMARK 620 3 ASN B 456 ND2 107.1 46.4 REMARK 620 4 ASP B 458 OD1 65.7 73.1 114.1 REMARK 620 5 VAL B 460 O 65.1 136.0 146.9 92.6 REMARK 620 6 ASP B 462 OD2 73.7 84.1 67.5 137.9 79.6 REMARK 620 7 ASP B 458 OD2 111.0 72.8 85.7 48.4 127.4 152.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACG B 988 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACG A 989 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 883 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 10 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LWH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF T. MARITIMA 4-ALPHA-GLUCANOTRANSFERASE DBREF 1LWJ A 1 441 UNP P80099 MGTA_THEMA 1 441 DBREF 1LWJ B 442 882 UNP P80099 MGTA_THEMA 1 441 SEQRES 1 A 441 MET ILE GLY TYR GLN ILE TYR VAL ARG SER PHE ARG ASP SEQRES 2 A 441 GLY ASN LEU ASP GLY VAL GLY ASP PHE ARG GLY LEU LYS SEQRES 3 A 441 ASN ALA VAL SER TYR LEU LYS GLU LEU GLY ILE ASP PHE SEQRES 4 A 441 VAL TRP LEU MET PRO VAL PHE SER SER ILE SER PHE HIS SEQRES 5 A 441 GLY TYR ASP VAL VAL ASP PHE TYR SER PHE LYS ALA GLU SEQRES 6 A 441 TYR GLY SER GLU ARG GLU PHE LYS GLU MET ILE GLU ALA SEQRES 7 A 441 PHE HIS ASP SER GLY ILE LYS VAL VAL LEU ASP LEU PRO SEQRES 8 A 441 ILE HIS HIS THR GLY PHE LEU HIS THR TRP PHE GLN LYS SEQRES 9 A 441 ALA LEU LYS GLY ASP PRO HIS TYR ARG ASP TYR TYR VAL SEQRES 10 A 441 TRP ALA ASN LYS GLU THR ASP LEU ASP GLU ARG ARG GLU SEQRES 11 A 441 TRP ASP GLY GLU LYS ILE TRP HIS PRO LEU GLU ASP GLY SEQRES 12 A 441 ARG PHE TYR ARG GLY LEU PHE GLY PRO PHE SER PRO ASP SEQRES 13 A 441 LEU ASN TYR ASP ASN PRO GLN VAL PHE ASP GLU MET LYS SEQRES 14 A 441 ARG LEU VAL LEU HIS LEU LEU ASP MET GLY VAL ASP GLY SEQRES 15 A 441 PHE ARG PHE ASP ALA ALA LYS HIS MET ARG ASP THR ILE SEQRES 16 A 441 GLU GLN ASN VAL ARG PHE TRP LYS TYR PHE LEU SER ASP SEQRES 17 A 441 LEU LYS GLY ILE PHE LEU ALA GLU ILE TRP ALA GLU ALA SEQRES 18 A 441 ARG MET VAL ASP GLU HIS GLY ARG ILE PHE GLY TYR MET SEQRES 19 A 441 LEU ASN PHE ASP THR SER HIS CYS ILE LYS GLU ALA VAL SEQRES 20 A 441 TRP LYS GLU ASN THR ARG VAL LEU ILE GLU SER ILE GLU SEQRES 21 A 441 ARG ALA VAL ILE ALA LYS ASP TYR LEU PRO VAL ASN PHE SEQRES 22 A 441 THR SER ASN HIS ASP MET SER ARG LEU ALA SER PHE GLU SEQRES 23 A 441 GLY GLY PHE SER LYS GLU LYS ILE LYS LEU SER ILE SER SEQRES 24 A 441 ILE LEU PHE THR LEU PRO GLY VAL PRO LEU VAL PHE TYR SEQRES 25 A 441 GLY ASP GLU LEU GLY MET LYS GLY VAL TYR GLN LYS PRO SEQRES 26 A 441 ASN THR GLU VAL VAL LEU ASP PRO PHE PRO TRP ASN GLU SEQRES 27 A 441 SER MET CYS VAL GLU GLY GLN THR PHE TRP LYS TRP PRO SEQRES 28 A 441 ALA TYR ASN GLY PRO PHE SER GLY ILE SER VAL GLU TYR SEQRES 29 A 441 GLN LYS ARG ASP PRO ASP SER ILE LEU SER HIS THR LEU SEQRES 30 A 441 GLY TRP THR ARG PHE ARG LYS GLU ASN GLN TRP ILE ASP SEQRES 31 A 441 ARG ALA LYS LEU GLU PHE LEU CYS LYS GLU ASP LYS PHE SEQRES 32 A 441 LEU VAL TYR ARG LEU TYR ASP ASP GLN HIS SER LEU LYS SEQRES 33 A 441 VAL PHE HIS ASN LEU SER GLY GLU GLU VAL VAL PHE GLU SEQRES 34 A 441 GLY VAL LYS MET LYS PRO TYR LYS THR GLU VAL VAL SEQRES 1 B 441 MET ILE GLY TYR GLN ILE TYR VAL ARG SER PHE ARG ASP SEQRES 2 B 441 GLY ASN LEU ASP GLY VAL GLY ASP PHE ARG GLY LEU LYS SEQRES 3 B 441 ASN ALA VAL SER TYR LEU LYS GLU LEU GLY ILE ASP PHE SEQRES 4 B 441 VAL TRP LEU MET PRO VAL PHE SER SER ILE SER PHE HIS SEQRES 5 B 441 GLY TYR ASP VAL VAL ASP PHE TYR SER PHE LYS ALA GLU SEQRES 6 B 441 TYR GLY SER GLU ARG GLU PHE LYS GLU MET ILE GLU ALA SEQRES 7 B 441 PHE HIS ASP SER GLY ILE LYS VAL VAL LEU ASP LEU PRO SEQRES 8 B 441 ILE HIS HIS THR GLY PHE LEU HIS THR TRP PHE GLN LYS SEQRES 9 B 441 ALA LEU LYS GLY ASP PRO HIS TYR ARG ASP TYR TYR VAL SEQRES 10 B 441 TRP ALA ASN LYS GLU THR ASP LEU ASP GLU ARG ARG GLU SEQRES 11 B 441 TRP ASP GLY GLU LYS ILE TRP HIS PRO LEU GLU ASP GLY SEQRES 12 B 441 ARG PHE TYR ARG GLY LEU PHE GLY PRO PHE SER PRO ASP SEQRES 13 B 441 LEU ASN TYR ASP ASN PRO GLN VAL PHE ASP GLU MET LYS SEQRES 14 B 441 ARG LEU VAL LEU HIS LEU LEU ASP MET GLY VAL ASP GLY SEQRES 15 B 441 PHE ARG PHE ASP ALA ALA LYS HIS MET ARG ASP THR ILE SEQRES 16 B 441 GLU GLN ASN VAL ARG PHE TRP LYS TYR PHE LEU SER ASP SEQRES 17 B 441 LEU LYS GLY ILE PHE LEU ALA GLU ILE TRP ALA GLU ALA SEQRES 18 B 441 ARG MET VAL ASP GLU HIS GLY ARG ILE PHE GLY TYR MET SEQRES 19 B 441 LEU ASN PHE ASP THR SER HIS CYS ILE LYS GLU ALA VAL SEQRES 20 B 441 TRP LYS GLU ASN THR ARG VAL LEU ILE GLU SER ILE GLU SEQRES 21 B 441 ARG ALA VAL ILE ALA LYS ASP TYR LEU PRO VAL ASN PHE SEQRES 22 B 441 THR SER ASN HIS ASP MET SER ARG LEU ALA SER PHE GLU SEQRES 23 B 441 GLY GLY PHE SER LYS GLU LYS ILE LYS LEU SER ILE SER SEQRES 24 B 441 ILE LEU PHE THR LEU PRO GLY VAL PRO LEU VAL PHE TYR SEQRES 25 B 441 GLY ASP GLU LEU GLY MET LYS GLY VAL TYR GLN LYS PRO SEQRES 26 B 441 ASN THR GLU VAL VAL LEU ASP PRO PHE PRO TRP ASN GLU SEQRES 27 B 441 SER MET CYS VAL GLU GLY GLN THR PHE TRP LYS TRP PRO SEQRES 28 B 441 ALA TYR ASN GLY PRO PHE SER GLY ILE SER VAL GLU TYR SEQRES 29 B 441 GLN LYS ARG ASP PRO ASP SER ILE LEU SER HIS THR LEU SEQRES 30 B 441 GLY TRP THR ARG PHE ARG LYS GLU ASN GLN TRP ILE ASP SEQRES 31 B 441 ARG ALA LYS LEU GLU PHE LEU CYS LYS GLU ASP LYS PHE SEQRES 32 B 441 LEU VAL TYR ARG LEU TYR ASP ASP GLN HIS SER LEU LYS SEQRES 33 B 441 VAL PHE HIS ASN LEU SER GLY GLU GLU VAL VAL PHE GLU SEQRES 34 B 441 GLY VAL LYS MET LYS PRO TYR LYS THR GLU VAL VAL HET ACG B 988 54 HET ACG A 989 54 HET CA A 883 1 HET CA B 10 1 HETNAM ACG MODIFIED ACARBOSE PENTASACCHARIDE HETNAM CA CALCIUM ION FORMUL 3 ACG 2(C31 H53 N O22) FORMUL 5 CA 2(CA 2+) FORMUL 7 HOH *41(H2 O) HELIX 1 1 TYR A 7 ARG A 12 1 6 HELIX 2 2 ASP A 21 ALA A 28 1 8 HELIX 3 3 ALA A 28 LEU A 35 1 8 HELIX 4 4 SER A 68 SER A 82 1 15 HELIX 5 5 HIS A 99 LYS A 107 1 9 HELIX 6 6 ASP A 109 ASP A 114 1 6 HELIX 7 7 ASN A 161 ASP A 177 1 17 HELIX 8 8 ALA A 187 MET A 191 5 5 HELIX 9 9 THR A 194 LEU A 206 1 13 HELIX 10 10 GLU A 220 GLY A 232 1 13 HELIX 11 11 ASN A 236 LYS A 249 1 14 HELIX 12 12 THR A 252 VAL A 263 1 12 HELIX 13 13 ARG A 281 PHE A 285 5 5 HELIX 14 14 SER A 290 THR A 303 1 14 HELIX 15 15 ASN A 326 LEU A 331 5 6 HELIX 16 16 SER A 361 LYS A 366 1 6 HELIX 17 17 SER A 371 ASN A 386 1 16 HELIX 18 18 GLN A 387 ASP A 390 5 4 HELIX 19 19 TYR B 448 PHE B 452 5 5 HELIX 20 20 ASP B 462 ALA B 469 1 8 HELIX 21 21 ALA B 469 LEU B 476 1 8 HELIX 22 22 SER B 509 SER B 523 1 15 HELIX 23 23 HIS B 540 GLY B 549 1 10 HELIX 24 24 ASP B 550 ASP B 555 1 6 HELIX 25 25 ASN B 602 MET B 619 1 18 HELIX 26 26 THR B 635 SER B 648 1 14 HELIX 27 27 GLU B 661 PHE B 672 1 12 HELIX 28 28 ASN B 677 LYS B 690 1 14 HELIX 29 29 THR B 693 VAL B 704 1 12 HELIX 30 30 ARG B 722 PHE B 726 5 5 HELIX 31 31 SER B 731 PHE B 743 1 13 HELIX 32 32 ASN B 767 VAL B 771 5 5 HELIX 33 33 SER B 802 LYS B 807 1 6 HELIX 34 34 SER B 812 GLU B 826 1 15 HELIX 35 35 ASN B 827 ASP B 831 5 5 SHEET 1 A 9 GLY A 3 ILE A 6 0 SHEET 2 A 9 PHE A 39 LEU A 42 1 O TRP A 41 N ILE A 6 SHEET 3 A 9 LYS A 85 LEU A 90 1 O VAL A 87 N LEU A 42 SHEET 4 A 9 GLY A 182 PHE A 185 1 O GLY A 182 N LEU A 88 SHEET 5 A 9 ILE A 212 ALA A 215 1 O LEU A 214 N PHE A 183 SHEET 6 A 9 TYR A 233 LEU A 235 1 O LEU A 235 N ALA A 215 SHEET 7 A 9 LEU A 269 PHE A 273 1 O VAL A 271 N MET A 234 SHEET 8 A 9 VAL A 307 PHE A 311 1 O LEU A 309 N ASN A 272 SHEET 9 A 9 GLY A 3 ILE A 6 1 N GLY A 3 O PRO A 308 SHEET 1 B 2 PHE A 46 SER A 47 0 SHEET 2 B 2 ASP A 58 PHE A 62 -1 O SER A 61 N SER A 47 SHEET 1 C 2 TRP A 137 PRO A 139 0 SHEET 2 C 2 PHE A 145 ARG A 147 -1 O TYR A 146 N HIS A 138 SHEET 1 D 4 LYS A 393 LYS A 399 0 SHEET 2 D 4 PHE A 403 ASP A 410 -1 O TYR A 409 N LYS A 393 SHEET 3 D 4 HIS A 413 ASN A 420 -1 O LEU A 415 N LEU A 408 SHEET 4 D 4 THR A 438 VAL A 440 -1 O GLU A 439 N PHE A 418 SHEET 1 E 2 VAL A 426 PHE A 428 0 SHEET 2 E 2 VAL A 431 MET A 433 -1 O VAL A 431 N PHE A 428 SHEET 1 F 9 GLY B 444 ILE B 447 0 SHEET 2 F 9 PHE B 480 LEU B 483 1 O TRP B 482 N ILE B 447 SHEET 3 F 9 LYS B 526 LEU B 531 1 O VAL B 528 N VAL B 481 SHEET 4 F 9 GLY B 623 PHE B 626 1 O GLY B 623 N LEU B 529 SHEET 5 F 9 ILE B 653 ALA B 656 1 O LEU B 655 N PHE B 626 SHEET 6 F 9 GLY B 673 LEU B 676 1 O LEU B 676 N ALA B 656 SHEET 7 F 9 LEU B 710 PHE B 714 1 O VAL B 712 N MET B 675 SHEET 8 F 9 VAL B 748 PHE B 752 1 O LEU B 750 N ASN B 713 SHEET 9 F 9 GLY B 444 ILE B 447 1 N GLY B 444 O PRO B 749 SHEET 1 G 2 TRP B 578 PRO B 580 0 SHEET 2 G 2 PHE B 586 ARG B 588 -1 O TYR B 587 N HIS B 579 SHEET 1 H 4 LYS B 834 GLU B 841 0 SHEET 2 H 4 PHE B 844 TYR B 850 -1 O ARG B 848 N GLU B 836 SHEET 3 H 4 SER B 855 ASN B 861 -1 O HIS B 860 N LEU B 845 SHEET 4 H 4 THR B 879 VAL B 881 -1 O GLU B 880 N PHE B 859 SHEET 1 I 2 VAL B 867 VAL B 868 0 SHEET 2 I 2 LYS B 873 MET B 874 -1 O MET B 874 N VAL B 867 LINK CA CA A 883 OD1 ASN A 15 1555 1555 2.31 LINK CA CA A 883 OD2 ASP A 21 1555 1555 2.15 LINK CA CA A 883 OD2 ASP A 17 1555 1555 3.06 LINK CA CA A 883 OD1 ASP A 13 1555 1555 2.55 LINK CA CA A 883 O VAL A 19 1555 1555 2.41 LINK CA CA A 883 OD1 ASP A 17 1555 1555 2.17 LINK CA CA B 10 OD1 ASP B 454 1555 1555 2.89 LINK CA CA B 10 OD1 ASN B 456 1555 1555 2.03 LINK CA CA B 10 ND2 ASN B 456 1555 1555 3.10 LINK CA CA B 10 OD1 ASP B 458 1555 1555 2.12 LINK CA CA B 10 O VAL B 460 1555 1555 2.35 LINK CA CA B 10 OD2 ASP B 462 1555 1555 2.29 LINK CA CA B 10 OD2 ASP B 458 1555 1555 2.93 CISPEP 1 LYS A 324 PRO A 325 0 -0.26 CISPEP 2 LYS B 765 PRO B 766 0 0.59 SITE 1 AC1 18 HOH B 36 TYR B 495 HIS B 535 GLU B 571 SITE 2 AC1 18 TRP B 572 PHE B 591 ARG B 625 ASP B 627 SITE 3 AC1 18 ALA B 628 LYS B 630 HIS B 631 GLU B 657 SITE 4 AC1 18 TRP B 659 ALA B 660 GLU B 661 HIS B 718 SITE 5 AC1 18 ASP B 719 THR B 768 SITE 1 AC2 16 HIS A 52 TYR A 54 HIS A 94 TRP A 131 SITE 2 AC2 16 PHE A 150 ARG A 184 ASP A 186 ALA A 187 SITE 3 AC2 16 LYS A 189 HIS A 190 GLU A 216 TRP A 218 SITE 4 AC2 16 HIS A 277 ASP A 278 THR A 327 HOH A1001 SITE 1 AC3 5 ASP A 13 ASN A 15 ASP A 17 VAL A 19 SITE 2 AC3 5 ASP A 21 SITE 1 AC4 5 ASP B 454 ASN B 456 ASP B 458 VAL B 460 SITE 2 AC4 5 ASP B 462 CRYST1 94.542 181.354 197.317 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010577 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005514 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005068 0.00000 MASTER 405 0 4 35 36 0 13 6 0 0 0 68 END