HEADER PROTEIN BINDING 11-MAY-02 1LQN TITLE THEORITICAL MODEL OF HUMAN METALLOPROTEINASE INHIBITOR 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLOPROTEINASE INHIBITOR 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TIMP-1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN KEYWDS GLYCOPROTEIN, METALLOPROTEASE INHIBITOR, ERYTHROCYTE KEYWDS 2 MATURATION, 3D-STRUCTURE, SIGNAL EXPDTA THEORETICAL MODEL AUTHOR S.C.MALLENA,K.YADUGIRI REVDAT 2 20-NOV-02 1LQN 1 REMARK REVDAT 1 05-JUN-02 1LQN 0 JRNL AUTH S.C.MALLENA,K.YADUGIRI JRNL TITL STRUCTURE OF METALLOPROTEINASE INHIBITOR 1 MODELED JRNL TITL 2 IN SILICO JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.J.P.DOCHERTY,A.LYONS,B.J.SMITH,E.M.WRIGHT, REMARK 1 AUTH 2 P.E.STEPHENS,T.J.R.HARRIS,G.MURPHY,J.J.REYNOLDS REMARK 1 TITL SEQUENCE OF HUMAN TISSUE INHIBITOR OF REMARK 1 TITL 2 MITALLOPROTEINASES AND ITS IDENTITY TO REMARK 1 TITL 3 ERYTHROID-POTENTIATING ACTIVITY REMARK 1 REF NATURE V. 318 66 1985 REMARK 1 REFN ASTM NATUAS UK ISSN 0028-0836 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.C.GASSON,D.W.GOLDE,S.E.KAUFMAN,C.A.WESTBROOK, REMARK 1 AUTH 2 R.M.HEWICK,R.J.KAUFMAN,G.G.WONG,P.A.TEMPLE, REMARK 1 AUTH 3 A.C.LEARY,E.L.BROWN,E.C.ORR,S.C.CLARK REMARK 1 TITL MOLECULAR CHARACTERIZATION AND EXPRESSION OF THE REMARK 1 TITL 2 GENE ENCODING HUMAN ERYTHROID-POTENTIATING ACTIVITY REMARK 1 REF NATURE V. 315 768 1985 REMARK 1 REFN ASTM NATUAS UK ISSN 0028-0836 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LQN COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-MAY-2002. REMARK 100 THE RCSB ID CODE IS RCSB016190. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: ACCELRYS SOFTWARE : MODELLER VERIFIED WITH PROCHECK REMARK 220 (HOMOLOGY MODELLING DONE WITH 1CK7 (PDB I.D.) AS THE REMARK 220 TEMPLATE WITH A SEQUENCE ALIGNMENT OF THE UNKNOWN REMARK 220 PROTEIN AND AT LEAST ONE OTHER KNOWN STRUCTURE, MODELER REMARK 220 CREATES A COMPLETE MODEL FOR YOUR PROTEIN AUTOMATICALLY REMARK 220 USING A NETWORK OF EMPIRICALLY-DERIVED SPATIAL REMARK 220 RESTRAINTS. BECAUSE IT OPTIMIZES BOTH RESTRAINTS AND REMARK 220 STEREOCHEMICAL GEOMETRY, MODELER PROVIDES AN EXTREMELY REMARK 220 ACCURATE MODELING METHOD.) REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 18 C - N - CA ANGL. DEV. = 25.2 DEGREES REMARK 500 GLN A 73 CG - CD - OE1 ANGL. DEV. =-76.4 DEGREES REMARK 500 GLN A 73 CG - CD - NE2 ANGL. DEV. =-22.9 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 103 160.65 87.23 REMARK 500 CYS A 150 27.28 128.85 REMARK 500 LEU A 175 139.57 95.51 REMARK 500 LEU A 187 159.77 88.49 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 80 ILE A 81 128.41 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UEA RELATED DB: PDB REMARK 900 1UEA CONTAINS X-RAY STRUCTURE OF THE SAME PROTEIN DBREF 1LQN A 1 207 UNP P01033 TIM1_HUMAN 1 207 SEQRES 1 A 207 MET ALA PRO PHE GLU PRO LEU ALA SER GLY ILE LEU LEU SEQRES 2 A 207 LEU LEU TRP LEU ILE ALA PRO SER ARG ALA CYS THR CYS SEQRES 3 A 207 VAL PRO PRO HIS PRO GLN THR ALA PHE CYS ASN SER ASP SEQRES 4 A 207 LEU VAL ILE ARG ALA LYS PHE VAL GLY THR PRO GLU VAL SEQRES 5 A 207 ASN GLN THR THR LEU TYR GLN ARG TYR GLU ILE LYS MET SEQRES 6 A 207 THR LYS MET TYR LYS GLY PHE GLN ALA LEU GLY ASP ALA SEQRES 7 A 207 ALA ASP ILE ARG PHE VAL TYR THR PRO ALA MET GLU SER SEQRES 8 A 207 VAL CYS GLY TYR PHE HIS ARG SER HIS ASN ARG SER GLU SEQRES 9 A 207 GLU PHE LEU ILE ALA GLY LYS LEU GLN ASP GLY LEU LEU SEQRES 10 A 207 HIS ILE THR THR CYS SER PHE VAL ALA PRO TRP ASN SER SEQRES 11 A 207 LEU SER LEU ALA GLN ARG ARG GLY PHE THR LYS THR TYR SEQRES 12 A 207 THR VAL GLY CYS GLU GLU CYS THR VAL PHE PRO CYS LEU SEQRES 13 A 207 SER ILE PRO CYS LYS LEU GLN SER GLY THR HIS CYS LEU SEQRES 14 A 207 TRP THR ASP GLN LEU LEU GLN GLY SER GLU LYS GLY PHE SEQRES 15 A 207 GLN SER ARG HIS LEU ALA CYS LEU PRO ARG GLU PRO GLY SEQRES 16 A 207 LEU CYS THR TRP GLN SER LEU ARG SER GLN ILE ALA HELIX 1 1 VAL A 47 THR A 66 1 20 HELIX 2 2 ARG A 137 CYS A 150 1 14 HELIX 3 3 GLY A 177 LEU A 187 1 11 SHEET 1 A 2 ALA A 34 ASN A 37 0 SHEET 2 A 2 TYR A 69 PHE A 72 1 O TYR A 69 N PHE A 35 SHEET 1 B 3 ARG A 82 VAL A 84 0 SHEET 2 B 3 THR A 120 SER A 123 1 O CYS A 122 N VAL A 84 SHEET 3 B 3 LEU A 107 ALA A 109 -1 N ILE A 108 O THR A 121 SHEET 1 C 2 TRP A 128 ASN A 129 0 SHEET 2 C 2 GLN A 135 ARG A 136 1 O GLN A 135 N ASN A 129 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 97 0 0 3 7 0 0 6 0 0 0 16 END