HEADER ELECTRON TRANSPORT 30-APR-02 1LLY TITLE STRUCTURE OF CYTOCHROME B-GALLUS GALLUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME B; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANELLE: MITOCHONDRION KEYWDS ELECTRON TRANSPORT, MITOCHONDRION, RESPIRATORY CHAIN, KEYWDS 2 TRANSMEMBRANE, HEME EXPDTA THEORETICAL MODEL AUTHOR R.SAGAJKAR REVDAT 2 20-NOV-02 1LLY 1 REMARK REVDAT 1 15-MAY-02 1LLY 0 JRNL AUTH R.SAGAJKAR JRNL TITL STRUCTURE OF CYTOCHROME B -GALLUS GALLUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : MODELER 2000 REMARK 3 AUTHORS : JONES,ZOU,COWAN,KJELDGAARD REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LLY COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-MAY-2002. REMARK 100 THE RCSB ID CODE IS RCSB016069. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: THIS STRUCTURE WAS DETERMINED USING HOMOLOGY MODELING REMARK 220 TECHNIQUE. ACCORDING TO NCBI-BLAST SEARCH THE REFERENCE REMARK 220 PROTEIN 3BCC|A & 1BE3|C WERE TAKEN FROM PROTEIN DATA REMARK 220 BANK FOR HOMOLOGY MODELING. MULTIPLE SEQUENCE ALIGNMENT REMARK 220 WAS DONE BY CLUSTALW METHOD. REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 360 CB PHE A 360 CG 0.133 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 360 CB - CG - CD2 ANGL. DEV. = 32.6 DEGREES REMARK 500 PHE A 360 CD1 - CG - CD2 ANGL. DEV. =-44.5 DEGREES REMARK 500 PHE A 360 CG - CD1 - CE1 ANGL. DEV. =-30.0 DEGREES REMARK 500 PHE A 360 CG - CD2 - CE2 ANGL. DEV. =-71.8 DEGREES REMARK 500 PHE A 360 CD1 - CE1 - CZ ANGL. DEV. =-41.5 DEGREES REMARK 500 PHE A 360 CE1 - CZ - CE2 ANGL. DEV. =-67.6 DEGREES REMARK 500 PHE A 360 CZ - CE2 - CD2 ANGL. DEV. =-104.5 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 111 -64.43 65.33 REMARK 500 LYS A 218 131.30 76.83 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LLK RELATED DB: PDB REMARK 900 1LLK CONTAINS CYTOCHROME C OXIDASE POLYPEPTIDE III- GALLUS REMARK 900 GALLUS DBREF 1LLY A 1 380 UNP P18946 CYB_CHICK 1 380 SEQRES 1 A 380 MET ALA PRO ASN ILE ARG LYS SER HIS PRO LEU LEU LYS SEQRES 2 A 380 MET ILE ASN ASN SER LEU ILE ASP LEU PRO ALA PRO SER SEQRES 3 A 380 ASN ILE SER ALA TRP TRP ASN PHE GLY SER LEU LEU ALA SEQRES 4 A 380 VAL CYS LEU MET THR GLN ILE LEU THR GLY LEU LEU LEU SEQRES 5 A 380 ALA MET HIS TYR THR ALA ASP THR SER LEU ALA PHE SER SEQRES 6 A 380 SER VAL ALA HIS THR CYS ARG ASN VAL GLN TYR GLY TRP SEQRES 7 A 380 LEU ILE ARG ASN LEU HIS ALA ASN GLY ALA SER PHE PHE SEQRES 8 A 380 PHE ILE CYS ILE PHE LEU HIS ILE GLY ARG GLY LEU TYR SEQRES 9 A 380 TYR GLY SER TYR LEU TYR LYS GLU THR TRP ASN THR GLY SEQRES 10 A 380 VAL ILE LEU LEU LEU THR LEU MET ALA THR ALA PHE VAL SEQRES 11 A 380 GLY TYR VAL LEU PRO TRP GLY GLN MET SER PHE TRP GLY SEQRES 12 A 380 ALA THR VAL ILE THR ASN LEU PHE SER ALA ILE PRO TYR SEQRES 13 A 380 ILE GLY HIS THR LEU VAL GLU TRP ALA TRP GLY GLY PHE SEQRES 14 A 380 SER VAL ASP ASN PRO THR LEU THR ARG PHE PHE ALA LEU SEQRES 15 A 380 HIS PHE LEU LEU PRO PHE ALA ILE ALA GLY ILE THR ILE SEQRES 16 A 380 ILE HIS LEU THR PHE LEU HIS GLU SER GLY SER ASN ASN SEQRES 17 A 380 PRO LEU GLY ILE SER SER ASP SER ASP LYS ILE PRO PHE SEQRES 18 A 380 HIS PRO TYR TYR SER PHE LYS ASP ILE LEU GLY LEU THR SEQRES 19 A 380 LEU MET LEU THR PRO PHE LEU THR LEU ALA LEU PHE SER SEQRES 20 A 380 PRO ASN LEU LEU GLY ASP PRO GLU ASN PHE THR PRO ALA SEQRES 21 A 380 ASN PRO LEU VAL THR PRO PRO HIS ILE LYS PRO GLU TRP SEQRES 22 A 380 TYR PHE LEU PHE ALA TYR ALA ILE LEU ARG SER ILE PRO SEQRES 23 A 380 ASN LYS LEU GLY GLY VAL LEU ALA LEU ALA ALA SER VAL SEQRES 24 A 380 LEU ILE LEU PHE LEU ILE PRO PHE LEU HIS LYS SER LYS SEQRES 25 A 380 GLN ARG THR MET THR PHE ARG PRO LEU SER GLN THR LEU SEQRES 26 A 380 PHE TRP LEU LEU VAL ALA ASN LEU LEU ILE LEU THR TRP SEQRES 27 A 380 ILE GLY SER GLN PRO VAL GLU HIS PRO PHE ILE ILE ILE SEQRES 28 A 380 GLY GLN MET ALA SER LEU SER TYR PHE THR ILE LEU LEU SEQRES 29 A 380 ILE LEU PHE PRO THR ILE GLY THR LEU GLU ASN LYS MET SEQRES 30 A 380 LEU ASN TYR HELIX 1 1 PRO A 10 ILE A 20 1 11 HELIX 2 2 SER A 29 TRP A 32 5 4 HELIX 3 3 ASN A 33 TYR A 56 1 24 HELIX 4 4 ASP A 59 VAL A 74 1 16 HELIX 5 5 TYR A 76 GLY A 106 1 31 HELIX 6 6 SER A 107 TYR A 110 5 4 HELIX 7 7 LYS A 111 VAL A 133 1 23 HELIX 8 8 GLY A 137 PHE A 151 1 15 HELIX 9 9 SER A 152 ILE A 154 5 3 HELIX 10 10 ILE A 157 GLY A 167 1 11 HELIX 11 11 ASP A 172 SER A 204 1 33 HELIX 12 12 PHE A 221 SER A 247 1 27 HELIX 13 13 ASP A 253 THR A 258 5 6 HELIX 14 14 GLU A 272 TYR A 274 5 3 HELIX 15 15 PHE A 275 ARG A 283 1 9 HELIX 16 16 ASN A 287 ILE A 301 1 15 HELIX 17 17 LEU A 304 HIS A 309 1 6 HELIX 18 18 ARG A 319 SER A 341 1 23 HELIX 19 19 GLU A 345 ILE A 365 1 21 HELIX 20 20 ILE A 365 ASN A 379 1 15 SHEET 1 A 2 PRO A 23 ALA A 24 0 SHEET 2 A 2 ILE A 219 PRO A 220 -1 O ILE A 219 N ALA A 24 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 85 0 0 20 2 0 0 6 0 0 0 30 END