HEADER TRANSCRIPTION/DNA 25-MAR-94 1LLI TITLE THE CRYSTAL STRUCTURE OF A MUTANT PROTEIN WITH ALTERED BUT IMPROVED TITLE 2 HYDROPHOBIC CORE PACKING COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*AP*AP*TP*AP*CP*CP*AP*CP*TP*GP*GP*CP*GP*GP*TP*GP*A P*TP*AP*T)-3'); COMPND 4 CHAIN: D; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(*TP*AP*TP*AP*TP*CP*AP*CP*CP*GP*CP*CP*AP*GP*TP*GP*G P*TP*AP*T)-3'); COMPND 9 CHAIN: E; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: PROTEIN (LAMBDA REPRESSOR); COMPND 13 CHAIN: A, B; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE LAMBDA; SOURCE 7 ORGANISM_TAXID: 10710; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-DNA COMPLEX, DOUBLE HELIX, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.A.LIM,A.HODEL,R.T.SAUER,F.M.RICHARDS REVDAT 3 29-NOV-17 1LLI 1 HELIX REVDAT 2 24-FEB-09 1LLI 1 VERSN REVDAT 1 31-AUG-94 1LLI 0 JRNL AUTH W.A.LIM,A.HODEL,R.T.SAUER,F.M.RICHARDS JRNL TITL THE CRYSTAL STRUCTURE OF A MUTANT PROTEIN WITH ALTERED BUT JRNL TITL 2 IMPROVED HYDROPHOBIC CORE PACKING. JRNL REF PROC.NATL.ACAD.SCI.USA V. 91 423 1994 JRNL REFN ISSN 0027-8424 JRNL PMID 8278404 JRNL DOI 10.1073/PNAS.91.1.423 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.J.BEAMER,C.O.PABO REMARK 1 TITL REFINED 1.8 ANGSTROM CRYSTAL STRUCTURE OF THE LAMBDA REMARK 1 TITL 2 REPRESSOR-OPERATOR COMPLEX REMARK 1 REF J.MOL.BIOL. V. 227 177 1992 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1396 REMARK 3 NUCLEIC ACID ATOMS : 814 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 92 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 3.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LLI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000174754. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.45000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 THR A 2 REMARK 465 LYS A 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 5 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA D 1 C5' DA D 1 C4' 0.043 REMARK 500 DG D 13 C8 DG D 13 N9 -0.056 REMARK 500 DT D 15 C5 DT D 15 C7 0.038 REMARK 500 DA D 17 N9 DA D 17 C4 0.036 REMARK 500 DT E 1 C5' DT E 1 C4' 0.044 REMARK 500 DT E 3 C5 DT E 3 C7 0.039 REMARK 500 DT E 5 C5 DT E 5 C7 0.049 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA D 1 O4' - C1' - C2' ANGL. DEV. = -6.8 DEGREES REMARK 500 DA D 1 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA D 2 C3' - O3' - P ANGL. DEV. = 10.3 DEGREES REMARK 500 DT D 3 O4' - C1' - C2' ANGL. DEV. = -5.1 DEGREES REMARK 500 DT D 3 C5 - C6 - N1 ANGL. DEV. = -3.9 DEGREES REMARK 500 DT D 3 C3' - O3' - P ANGL. DEV. = 8.1 DEGREES REMARK 500 DA D 4 O4' - C1' - C2' ANGL. DEV. = -5.6 DEGREES REMARK 500 DA D 4 C3' - O3' - P ANGL. DEV. = 7.5 DEGREES REMARK 500 DC D 5 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 DC D 5 N1 - C2 - O2 ANGL. DEV. = 3.9 DEGREES REMARK 500 DC D 5 N3 - C2 - O2 ANGL. DEV. = -4.8 DEGREES REMARK 500 DC D 6 O4' - C1' - C2' ANGL. DEV. = -4.8 DEGREES REMARK 500 DC D 6 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 DC D 6 N1 - C2 - O2 ANGL. DEV. = 4.0 DEGREES REMARK 500 DA D 7 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 DC D 8 O4' - C4' - C3' ANGL. DEV. = -6.1 DEGREES REMARK 500 DC D 8 C1' - O4' - C4' ANGL. DEV. = -10.3 DEGREES REMARK 500 DC D 8 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DT D 9 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 DT D 9 C4 - C5 - C6 ANGL. DEV. = 3.9 DEGREES REMARK 500 DT D 9 C6 - C5 - C7 ANGL. DEV. = -5.4 DEGREES REMARK 500 DG D 10 N3 - C4 - C5 ANGL. DEV. = -3.0 DEGREES REMARK 500 DG D 13 O4' - C1' - C2' ANGL. DEV. = -5.2 DEGREES REMARK 500 DG D 13 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 DT D 15 O4' - C1' - N1 ANGL. DEV. = 6.7 DEGREES REMARK 500 DA D 17 O4' - C1' - C2' ANGL. DEV. = -5.4 DEGREES REMARK 500 DA D 17 C3' - O3' - P ANGL. DEV. = 9.7 DEGREES REMARK 500 DT D 18 O4' - C1' - C2' ANGL. DEV. = -8.3 DEGREES REMARK 500 DT D 18 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DT D 18 C4 - C5 - C6 ANGL. DEV. = 4.2 DEGREES REMARK 500 DT D 18 C6 - C5 - C7 ANGL. DEV. = -6.9 DEGREES REMARK 500 DT D 18 C3' - O3' - P ANGL. DEV. = 7.4 DEGREES REMARK 500 DA D 19 C1' - O4' - C4' ANGL. DEV. = 4.7 DEGREES REMARK 500 DA D 19 O4' - C1' - C2' ANGL. DEV. = -5.8 DEGREES REMARK 500 DT D 20 O4' - C1' - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 DT D 20 C4 - C5 - C6 ANGL. DEV. = 4.4 DEGREES REMARK 500 DT D 20 C6 - C5 - C7 ANGL. DEV. = -5.6 DEGREES REMARK 500 DT E 1 O4' - C1' - N1 ANGL. DEV. = 5.5 DEGREES REMARK 500 DT E 1 C6 - C5 - C7 ANGL. DEV. = -4.1 DEGREES REMARK 500 DA E 2 O4' - C1' - N9 ANGL. DEV. = 6.3 DEGREES REMARK 500 DA E 2 C3' - O3' - P ANGL. DEV. = 9.0 DEGREES REMARK 500 DT E 3 O4' - C1' - C2' ANGL. DEV. = -6.3 DEGREES REMARK 500 DT E 3 O4' - C1' - N1 ANGL. DEV. = -5.7 DEGREES REMARK 500 DA E 4 O4' - C1' - C2' ANGL. DEV. = -5.3 DEGREES REMARK 500 DA E 4 C3' - O3' - P ANGL. DEV. = 9.5 DEGREES REMARK 500 DT E 5 O4' - C1' - C2' ANGL. DEV. = -5.8 DEGREES REMARK 500 DT E 5 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT E 5 C6 - C5 - C7 ANGL. DEV. = -4.8 DEGREES REMARK 500 DC E 6 C5' - C4' - C3' ANGL. DEV. = -12.1 DEGREES REMARK 500 DC E 6 O4' - C1' - C2' ANGL. DEV. = -5.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 74 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 77 85.28 -159.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DA D 1 0.07 SIDE CHAIN REMARK 500 DA D 2 0.05 SIDE CHAIN REMARK 500 DC D 5 0.11 SIDE CHAIN REMARK 500 DC D 6 0.07 SIDE CHAIN REMARK 500 DA D 7 0.06 SIDE CHAIN REMARK 500 DC D 8 0.09 SIDE CHAIN REMARK 500 DG D 10 0.08 SIDE CHAIN REMARK 500 DG D 13 0.08 SIDE CHAIN REMARK 500 DG D 14 0.09 SIDE CHAIN REMARK 500 DT D 15 0.12 SIDE CHAIN REMARK 500 DT D 20 0.10 SIDE CHAIN REMARK 500 DT E 1 0.20 SIDE CHAIN REMARK 500 DA E 4 0.07 SIDE CHAIN REMARK 500 DT E 5 0.10 SIDE CHAIN REMARK 500 DC E 6 0.22 SIDE CHAIN REMARK 500 DA E 7 0.11 SIDE CHAIN REMARK 500 DC E 8 0.11 SIDE CHAIN REMARK 500 DC E 11 0.09 SIDE CHAIN REMARK 500 DC E 12 0.11 SIDE CHAIN REMARK 500 DA E 13 0.09 SIDE CHAIN REMARK 500 DG E 14 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1LLI A 1 92 UNP P03034 RPC1_LAMBD 1 92 DBREF 1LLI B 1 92 UNP P03034 RPC1_LAMBD 1 92 DBREF 1LLI D 1 20 PDB 1LLI 1LLI 1 20 DBREF 1LLI E 1 20 PDB 1LLI 1LLI 1 20 SEQADV 1LLI LEU A 36 UNP P03034 VAL 36 CONFLICT SEQADV 1LLI LEU A 40 UNP P03034 MET 40 CONFLICT SEQADV 1LLI ILE A 47 UNP P03034 VAL 47 CONFLICT SEQADV 1LLI LEU B 36 UNP P03034 VAL 36 CONFLICT SEQADV 1LLI LEU B 40 UNP P03034 MET 40 CONFLICT SEQADV 1LLI ILE B 47 UNP P03034 VAL 47 CONFLICT SEQRES 1 D 20 DA DA DT DA DC DC DA DC DT DG DG DC DG SEQRES 2 D 20 DG DT DG DA DT DA DT SEQRES 1 E 20 DT DA DT DA DT DC DA DC DC DG DC DC DA SEQRES 2 E 20 DG DT DG DG DT DA DT SEQRES 1 A 92 SER THR LYS LYS LYS PRO LEU THR GLN GLU GLN LEU GLU SEQRES 2 A 92 ASP ALA ARG ARG LEU LYS ALA ILE TYR GLU LYS LYS LYS SEQRES 3 A 92 ASN GLU LEU GLY LEU SER GLN GLU SER LEU ALA ASP LYS SEQRES 4 A 92 LEU GLY MET GLY GLN SER GLY ILE GLY ALA LEU PHE ASN SEQRES 5 A 92 GLY ILE ASN ALA LEU ASN ALA TYR ASN ALA ALA LEU LEU SEQRES 6 A 92 ALA LYS ILE LEU LYS VAL SER VAL GLU GLU PHE SER PRO SEQRES 7 A 92 SER ILE ALA ARG GLU ILE TYR GLU MET TYR GLU ALA VAL SEQRES 8 A 92 SER SEQRES 1 B 92 SER THR LYS LYS LYS PRO LEU THR GLN GLU GLN LEU GLU SEQRES 2 B 92 ASP ALA ARG ARG LEU LYS ALA ILE TYR GLU LYS LYS LYS SEQRES 3 B 92 ASN GLU LEU GLY LEU SER GLN GLU SER LEU ALA ASP LYS SEQRES 4 B 92 LEU GLY MET GLY GLN SER GLY ILE GLY ALA LEU PHE ASN SEQRES 5 B 92 GLY ILE ASN ALA LEU ASN ALA TYR ASN ALA ALA LEU LEU SEQRES 6 B 92 ALA LYS ILE LEU LYS VAL SER VAL GLU GLU PHE SER PRO SEQRES 7 B 92 SER ILE ALA ARG GLU ILE TYR GLU MET TYR GLU ALA VAL SEQRES 8 B 92 SER FORMUL 5 HOH *92(H2 O) HELIX 1 H1 GLN A 9 LYS A 25 1 17 HELIX 2 H2 SER A 32 LEU A 40 1 9 HELIX 3 H3 GLY A 43 GLY A 53 1 11 HELIX 4 H4 ASN A 58 LYS A 70 1 13 HELIX 5 H5 SER A 72 SER A 92 1 21 HELIX 6 H1 GLN B 9 LYS B 25 1 17 HELIX 7 H2 SER B 32 LEU B 40 1 9 HELIX 8 H3 GLY B 43 GLY B 53 1 11 HELIX 9 H4 ASN B 58 LYS B 70 1 13 HELIX 10 H5 SER B 72 SER B 92 1 21 CRYST1 37.150 68.900 56.790 90.00 92.20 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026918 0.000000 0.001034 0.00000 SCALE2 0.000000 0.014514 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017622 0.00000 MASTER 363 0 0 10 0 0 0 6 0 0 0 20 END