HEADER LIGASE 27-APR-02 1LLE TITLE ARGINYL-TRNA SYNTHETASE-SALMONELLA TYPHIMURIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGINYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 EC: 6.1.1.19 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_COMMON: BACTERIA; SOURCE 4 CELLULAR_LOCATION: CYTOPLASM KEYWDS AMINOACYL-TRNA SYNTHETASE, PROTEIN BIOSYNTHESIS, LIGASE, KEYWDS 2 ATP-BINDING, COMPLETE PROTEOME EXPDTA THEORETICAL MODEL AUTHOR R.SAGAJKAR,K.C.MISHRA REVDAT 2 20-NOV-02 1LLE 1 REMARK REVDAT 1 15-MAY-02 1LLE 0 JRNL AUTH R.SAGAJKAR,K.C.MISHRA JRNL TITL ARGINYL-TRNA SYNTHETASE-SALMONELLA TYPHIMURIUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : MODELER 2000 REMARK 3 AUTHORS : JONES, ZOU, COWAN, KJELDGAARD REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LLE COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-MAY-2002. REMARK 100 THE RCSB ID CODE IS RCSB016052. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: THIS MODEL WAS DETERMINED USING HOMOLOGY MODELING REMARK 220 TECHNIQUE. THE REFERENCE PROTEIN 1BS2.PDB WAS SELECTED REMARK 220 ACCORDING TO NCBI BLAST RESULT. REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 2 CB - CG - OD1 ANGL. DEV. =-77.4 DEGREES REMARK 500 ASN A 2 CB - CG - ND2 ANGL. DEV. =-20.8 DEGREES REMARK 500 GLN A 30 CG - CD - OE1 ANGL. DEV. =-76.4 DEGREES REMARK 500 GLN A 30 CG - CD - NE2 ANGL. DEV. =-22.9 DEGREES REMARK 500 ASN A 84 CB - CG - OD1 ANGL. DEV. =-78.2 DEGREES REMARK 500 ASN A 84 CB - CG - ND2 ANGL. DEV. =-21.6 DEGREES REMARK 500 TYR A 119 CB - CA - C ANGL. DEV. =-20.1 DEGREES REMARK 500 PHE A 224 CA - CB - CG ANGL. DEV. =-18.9 DEGREES REMARK 500 PHE A 503 CA - CB - CG ANGL. DEV. =-21.5 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 71 -86.05 138.10 REMARK 500 GLN A 97 -128.06 171.13 REMARK 500 SER A 120 -62.92 70.14 REMARK 500 ILE A 170 160.87 120.06 REMARK 500 TRP A 172 -43.90 82.77 REMARK 500 LYS A 295 -39.38 121.29 REMARK 500 LYS A 381 -91.10 69.01 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LKW RELATED DB: PDB REMARK 900 1LKW CONTAINS TRYPTOPHANYL-TRNA SYNTHETASE OF SALMONELLA REMARK 900 TYPHIMURIUM REMARK 900 RELATED ID: 1LLJ RELATED DB: PDB REMARK 900 1LLJ CONTAINS PHOSPHOMETHYLPYRIMIDINE KINASE OF SALMONELLA REMARK 900 TYPHIMURIUM DBREF 1LLE A 1 577 UNP P74871 SYR_SALTY 1 577 SEQRES 1 A 577 MET ASN ILE GLN ALA LEU LEU SER GLU LYS VAL SER GLN SEQRES 2 A 577 ALA MET ILE ALA ALA GLY ALA PRO ALA ASP CYS GLU PRO SEQRES 3 A 577 GLN VAL ARG GLN SER ALA LYS VAL GLN PHE GLY ASP TYR SEQRES 4 A 577 GLN ALA ASN GLY MET MET ALA VAL ALA LYS LYS LEU GLY SEQRES 5 A 577 MET ALA PRO ARG GLN LEU ALA GLU GLN VAL LEU THR HIS SEQRES 6 A 577 LEU ASP LEU SER GLY ILE ALA SER LYS VAL GLU ILE ALA SEQRES 7 A 577 GLY PRO GLY PHE ILE ASN ILE PHE LEU GLU PRO ALA PHE SEQRES 8 A 577 LEU ALA GLU GLN VAL GLN GLN ALA LEU ALA SER ASP ARG SEQRES 9 A 577 LEU GLY VAL SER GLN PRO THR ARG GLN THR ILE VAL VAL SEQRES 10 A 577 ASP TYR SER ALA PRO ASN VAL ALA LYS GLU MET HIS VAL SEQRES 11 A 577 GLY HIS LEU ARG SER THR ILE ILE GLY ASP ALA ALA VAL SEQRES 12 A 577 ARG THR LEU GLU PHE LEU GLY HIS HIS VAL ILE ARG ALA SEQRES 13 A 577 ASN HIS VAL GLY ASP TRP GLY THR GLN PHE GLY MET LEU SEQRES 14 A 577 ILE ALA TRP LEU GLU LYS GLN GLN GLN GLU ASN ALA GLY SEQRES 15 A 577 ASP MET ALA LEU ALA ASP LEU GLU GLY PHE TYR ARG ASP SEQRES 16 A 577 ALA LYS LYS HIS TYR ASP GLU ASP GLU ALA PHE ALA GLU SEQRES 17 A 577 ARG ALA ARG ASN TYR VAL VAL LYS LEU GLN SER GLY ASP SEQRES 18 A 577 THR TYR PHE ARG GLU MET TRP ARG LYS LEU VAL ASP ILE SEQRES 19 A 577 THR MET THR GLN ASN GLN ILE THR TYR ASP ARG LEU ASN SEQRES 20 A 577 VAL THR LEU THR ARG ASP ASP VAL MET GLY GLU SER LEU SEQRES 21 A 577 TYR ASN PRO MET LEU PRO GLY ILE VAL ALA ASP LEU LYS SEQRES 22 A 577 ALA LYS GLY LEU ALA VAL GLU SER GLU GLY ALA THR VAL SEQRES 23 A 577 VAL PHE LEU ASP GLU PHE LYS ASN LYS GLU GLY ASP PRO SEQRES 24 A 577 MET GLY VAL ILE ILE GLN LYS LYS ASP GLY GLY TYR LEU SEQRES 25 A 577 TYR THR THR THR ASP ILE ALA CYS ALA LYS TYR ARG TYR SEQRES 26 A 577 GLU THR LEU HIS ALA ASP ARG VAL LEU TYR TYR ILE ASP SEQRES 27 A 577 SER ARG GLN HIS GLN HIS LEU MET GLN ALA TRP THR ILE SEQRES 28 A 577 VAL ARG LYS ALA GLY TYR VAL PRO ASP SER VAL PRO LEU SEQRES 29 A 577 GLU HIS HIS MET PHE GLY MET MET LEU GLY LYS ASP GLY SEQRES 30 A 577 LYS PRO PHE LYS THR ARG ALA GLY GLY THR VAL LYS LEU SEQRES 31 A 577 ALA ASP LEU LEU ASP GLU ALA LEU GLU ARG ALA ARG ARG SEQRES 32 A 577 LEU VAL ALA GLU LYS ASN PRO ASP MET PRO ALA ASP GLU SEQRES 33 A 577 LEU GLU LYS LEU ALA ASN ALA VAL GLY ILE GLY ALA VAL SEQRES 34 A 577 LYS TYR ALA ASP LEU SER LYS ASN ARG THR THR ASP TYR SEQRES 35 A 577 ILE PHE ASP TRP ASP ASN MET LEU ALA PHE GLU GLY ASN SEQRES 36 A 577 THR ALA PRO TYR MET GLN TYR ALA TYR THR ARG VAL LEU SEQRES 37 A 577 SER VAL PHE ARG LYS ALA ASN ILE ASP GLU GLN ALA LEU SEQRES 38 A 577 ALA SER ALA PRO VAL ILE ILE SER GLU ASP ARG GLU ALA SEQRES 39 A 577 GLN LEU ALA ALA ARG LEU LEU GLN PHE GLU GLU THR LEU SEQRES 40 A 577 THR VAL VAL ALA ARG GLU GLY THR PRO HIS VAL MET CYS SEQRES 41 A 577 ALA TYR LEU TYR ASP VAL ALA GLY LEU PHE SER GLY PHE SEQRES 42 A 577 TYR GLU HIS CYS PRO ILE LEU SER ALA GLU ASN ASP ALA SEQRES 43 A 577 VAL ARG ASN SER ARG LEU LYS LEU ALA GLN LEU THR ALA SEQRES 44 A 577 LYS THR LEU LYS LEU GLY LEU ASP THR LEU GLY ILE GLU SEQRES 45 A 577 THR VAL GLU ARG MET HELIX 1 1 ILE A 3 ALA A 20 1 18 HELIX 2 2 ASP A 23 SER A 31 1 9 HELIX 3 3 PHE A 36 GLN A 40 5 5 HELIX 4 4 ALA A 46 LYS A 50 1 5 HELIX 5 5 PRO A 55 ASP A 67 1 13 HELIX 6 6 GLU A 88 VAL A 96 1 9 HELIX 7 7 GLY A 131 LEU A 149 1 19 HELIX 8 8 THR A 164 LEU A 169 1 6 HELIX 9 9 TRP A 172 GLN A 177 1 6 HELIX 10 10 GLN A 177 ALA A 196 1 20 HELIX 11 11 ALA A 205 VAL A 215 1 11 HELIX 12 12 TYR A 223 LEU A 246 1 24 HELIX 13 13 PRO A 263 GLY A 276 1 14 HELIX 14 14 LEU A 289 PHE A 292 5 4 HELIX 15 15 LEU A 312 HIS A 329 1 18 HELIX 16 16 ASP A 338 ARG A 340 5 3 HELIX 17 17 GLN A 341 ALA A 355 1 15 HELIX 18 18 PRO A 363 HIS A 366 5 4 HELIX 19 19 LYS A 389 LYS A 408 1 20 HELIX 20 20 GLU A 416 SER A 435 1 20 HELIX 21 21 ASP A 445 ALA A 451 1 7 HELIX 22 22 THR A 456 ARG A 472 1 17 HELIX 23 23 ASN A 475 SER A 483 1 9 HELIX 24 24 VAL A 486 GLU A 490 5 5 HELIX 25 25 ARG A 492 THR A 515 1 24 HELIX 26 26 VAL A 518 CYS A 537 1 20 HELIX 27 27 ASP A 545 ILE A 571 1 27 SHEET 1 A 4 ALA A 32 LYS A 33 0 SHEET 2 A 4 ASN A 42 MET A 45 -1 O GLY A 43 N ALA A 32 SHEET 3 A 4 PHE A 82 LEU A 87 -1 O ILE A 85 N ASN A 42 SHEET 4 A 4 SER A 73 GLY A 79 -1 N ILE A 77 O ASN A 84 SHEET 1 B 4 HIS A 152 ALA A 156 0 SHEET 2 B 4 THR A 114 ASP A 118 1 N ILE A 115 O HIS A 152 SHEET 3 B 4 ARG A 332 TYR A 335 1 O LEU A 334 N VAL A 116 SHEET 4 B 4 MET A 368 GLY A 370 1 O PHE A 369 N TYR A 335 SHEET 1 C 3 ALA A 278 SER A 281 0 SHEET 2 C 3 ALA A 284 VAL A 287 -1 O ALA A 284 N SER A 281 SHEET 3 C 3 VAL A 302 GLN A 305 -1 O VAL A 302 N VAL A 287 SHEET 1 D 2 ASP A 376 GLY A 377 0 SHEET 2 D 2 TYR A 442 ILE A 443 1 O TYR A 442 N GLY A 377 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 77 0 0 27 13 0 0 6 0 0 0 45 END