HEADER HYDROLASE 25-APR-02 1LKG TITLE THEORETICAL MODEL OF HUMAN TYPE IV COLLAGENASE PRECURSOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: 92 KDA TYPE IV COLLAGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 92 KDA GELATINASE, MATRIX METALLOPROTEINASE-9, COMPND 5 MMP-9, GELATINASE B, GELB; COMPND 6 EC: 3.4.24.35 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN KEYWDS METALLOPROTEASE, GLYCOPROTEIN, ZINC, ZYMOGEN, CALCIUM, KEYWDS 2 COLLAGEN DEGRADATION, EXTRACELLULAR MATRIX, REPEAT, SIGNAL EXPDTA THEORETICAL MODEL AUTHOR S.C.MALLENA,R.D.SAGAJKAR REVDAT 1 15-MAY-02 1LKG 0 JRNL AUTH S.C.MALLENA,R.D.SAGAJKAR JRNL TITL THEORETICAL MODEL OF HUMAN TYPE IV COLLAGENASE JRNL TITL 2 PRECURSOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.M.WILHELM,I.E.COLLIER,B.L.MARMER,A.Z.EISEN, REMARK 1 AUTH 2 G.A.GRANT,G.I.GOLDBERG REMARK 1 TITL SV40-TRANSFORMED HUMAN LUNG FIBROBLASTS SECRETE A REMARK 1 TITL 2 92-KDA TYPE IV COLLAGENASE WHICH IS IDENTICAL TO REMARK 1 TITL 3 THAT SECRETED BY NORMAL HUMAN MACROPHAGES. REMARK 1 REF J.BIOL.CHEM. V. 264 17213 1989 REMARK 1 REFN ASTM JBCHA3 US ISSN 0021-9258 REMARK 1 REFERENCE 2 REMARK 1 AUTH P.HUHTALA,A.TUUTTILA,L.T.CHOW,J.LOHI,J.KESKI-OJA, REMARK 1 AUTH 2 K.TRYGGVASON REMARK 1 TITL COMPLETE STRUCTURE OF THE HUMAN GENE FOR 92-KDA REMARK 1 TITL 2 TYPE IV COLLAGENASE. DIVERGENT REGULATION OF REMARK 1 TITL 3 EXPRESSION FOR THE 92- AND 72-KILODALTON ENZYME REMARK 1 TITL 4 GENES IN HT-1080 CELLS. REMARK 1 REF J.BIOL.CHEM. V. 266 16485 1991 REMARK 1 REFN ASTM JBCHA3 US ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LKG COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-APR-2002. REMARK 100 THE RCSB ID CODE IS RCSB016028. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: HOMOLOGY MODELLING WAS DONE WITH PDB ENTRY 1CK7 AS THE REMARK 220 TEMPLATE. WITH A SEQUENCE ALIGNMENT OF THE UNKNOWN REMARK 220 PROTEIN AND AT LEAST ONE OTHER KNOWN STRUCTURE, A REMARK 220 COMPLETE MODEL OF THE PROTEIN WAS CREATED BY MODELER REMARK 220 USING A NETWORK OF EMPIRICALLY-DERIVED SPATIAL REMARK 220 RESTRAINTS. BECAUSE IT OPTIMIZES BOTH RESTRAINTS AND REMARK 220 STEREOCHEMICAL GEOMETRY, MODELER PROVIDES AN EXTREMELY REMARK 220 ACCURATE MODELING METHOD. REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 25 OE1 - CD - NE2 ANGL. DEV. = 15.3 DEGREES REMARK 500 GLN A 25 CG - CD - OE1 ANGL. DEV. =-76.4 DEGREES REMARK 500 GLN A 25 CG - CD - NE2 ANGL. DEV. =-22.9 DEGREES REMARK 500 ALA A 647 C - N - CA ANGL. DEV. = 17.6 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 162 168.08 72.53 REMARK 500 ALA A 647 108.93 125.92 REMARK 500 GLU A 669 -78.16 141.96 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CK7 RELATED DB: PDB REMARK 900 GELATINASE A (FULL-LENGTH) DBREF 1LKG A 1 707 UNP P14780 MM09_HUMAN 1 707 SEQRES 1 A 707 MET SER LEU TRP GLN PRO LEU VAL LEU VAL LEU LEU VAL SEQRES 2 A 707 LEU GLY CYS CYS PHE ALA ALA PRO ARG GLN ARG GLN SER SEQRES 3 A 707 THR LEU VAL LEU PHE PRO GLY ASP LEU ARG THR ASN LEU SEQRES 4 A 707 THR ASP ARG GLN LEU ALA GLU GLU TYR LEU TYR ARG TYR SEQRES 5 A 707 GLY TYR THR ARG VAL ALA GLU MET ARG GLY GLU SER LYS SEQRES 6 A 707 SER LEU GLY PRO ALA LEU LEU LEU LEU GLN LYS GLN LEU SEQRES 7 A 707 SER LEU PRO GLU THR GLY GLU LEU ASP SER ALA THR LEU SEQRES 8 A 707 LYS ALA MET ARG THR PRO ARG CYS GLY VAL PRO ASP LEU SEQRES 9 A 707 GLY ARG PHE GLN THR PHE GLU GLY ASP LEU LYS TRP HIS SEQRES 10 A 707 HIS HIS ASN ILE THR TYR TRP ILE GLN ASN TYR SER GLU SEQRES 11 A 707 ASP LEU PRO ARG ALA VAL ILE ASP ASP ALA PHE ALA ARG SEQRES 12 A 707 ALA PHE ALA LEU TRP SER ALA VAL THR PRO LEU THR PHE SEQRES 13 A 707 THR ARG VAL TYR SER ARG ASP ALA ASP ILE VAL ILE GLN SEQRES 14 A 707 PHE GLY VAL ALA GLU HIS GLY ASP GLY TYR PRO PHE ASP SEQRES 15 A 707 GLY LYS ASP GLY LEU LEU ALA HIS ALA PHE PRO PRO GLY SEQRES 16 A 707 PRO GLY ILE GLN GLY ASP ALA HIS PHE ASP ASP ASP GLU SEQRES 17 A 707 LEU TRP SER LEU GLY LYS GLY VAL VAL VAL PRO THR ARG SEQRES 18 A 707 PHE GLY ASN ALA ASP GLY ALA ALA CYS HIS PHE PRO PHE SEQRES 19 A 707 ILE PHE GLU GLY ARG SER TYR SER ALA CYS THR THR ASP SEQRES 20 A 707 GLY ARG SER ASP GLY LEU PRO TRP CYS SER THR THR ALA SEQRES 21 A 707 ASN TYR ASP THR ASP ASP ARG PHE GLY PHE CYS PRO SER SEQRES 22 A 707 GLU ARG LEU TYR THR ARG ASP GLY ASN ALA ASP GLY LYS SEQRES 23 A 707 PRO CYS GLN PHE PRO PHE ILE PHE GLN GLY GLN SER TYR SEQRES 24 A 707 SER ALA CYS THR THR ASP GLY ARG SER ASP GLY TYR ARG SEQRES 25 A 707 TRP CYS ALA THR THR ALA ASN TYR ASP ARG ASP LYS LEU SEQRES 26 A 707 PHE GLY PHE CYS PRO THR ARG ALA ASP SER THR VAL MET SEQRES 27 A 707 GLY GLY ASN SER ALA GLY GLU LEU CYS VAL PHE PRO PHE SEQRES 28 A 707 THR PHE LEU GLY LYS GLU TYR SER THR CYS THR SER GLU SEQRES 29 A 707 GLY ARG GLY ASP GLY ARG LEU TRP CYS ALA THR THR SER SEQRES 30 A 707 ASN PHE ASP SER ASP LYS LYS TRP GLY PHE CYS PRO ASP SEQRES 31 A 707 GLN GLY TYR SER LEU PHE LEU VAL ALA ALA HIS GLU PHE SEQRES 32 A 707 GLY HIS ALA LEU GLY LEU ASP HIS SER SER VAL PRO GLU SEQRES 33 A 707 ALA LEU MET TYR PRO MET TYR ARG PHE THR GLU GLY PRO SEQRES 34 A 707 PRO LEU HIS LYS ASP ASP VAL ASN GLY ILE ARG HIS LEU SEQRES 35 A 707 TYR GLY PRO ARG PRO GLU PRO GLU PRO ARG PRO PRO THR SEQRES 36 A 707 THR THR THR PRO GLN PRO THR ALA PRO PRO THR VAL CYS SEQRES 37 A 707 PRO THR GLY PRO PRO THR VAL HIS PRO SER GLU ARG PRO SEQRES 38 A 707 THR ALA GLY PRO THR GLY PRO PRO SER ALA GLY PRO THR SEQRES 39 A 707 GLY PRO PRO THR ALA GLY PRO SER THR ALA THR THR VAL SEQRES 40 A 707 PRO LEU SER PRO VAL ASP ASP ALA CYS ASN VAL ASN ILE SEQRES 41 A 707 PHE ASP ALA ILE ALA GLU ILE GLY ASN GLN LEU TYR LEU SEQRES 42 A 707 PHE LYS ASP GLY LYS TYR TRP ARG PHE SER GLU GLY ARG SEQRES 43 A 707 GLY SER ARG PRO GLN GLY PRO PHE LEU ILE ALA ASP LYS SEQRES 44 A 707 TRP PRO ALA LEU PRO ARG LYS LEU ASP SER VAL PHE GLU SEQRES 45 A 707 GLU PRO LEU SER LYS LYS LEU PHE PHE PHE SER GLY ARG SEQRES 46 A 707 GLN VAL TRP VAL TYR THR GLY ALA SER VAL LEU GLY PRO SEQRES 47 A 707 ARG ARG LEU ASP LYS LEU GLY LEU GLY ALA ASP VAL ALA SEQRES 48 A 707 GLN VAL THR GLY ALA LEU ARG SER GLY ARG GLY LYS MET SEQRES 49 A 707 LEU LEU PHE SER GLY ARG ARG LEU TRP ARG PHE ASP VAL SEQRES 50 A 707 LYS ALA GLN MET VAL ASP PRO ARG SER ALA SER GLU VAL SEQRES 51 A 707 ASP ARG MET PHE PRO GLY VAL PRO LEU ASP THR HIS ASP SEQRES 52 A 707 VAL PHE GLN TYR ARG GLU LYS ALA TYR PHE CYS GLN ASP SEQRES 53 A 707 ARG PHE TYR TRP ARG VAL SER SER ARG SER GLU LEU ASN SEQRES 54 A 707 GLN VAL ASP GLN VAL GLY TYR VAL THR TYR ASP ILE LEU SEQRES 55 A 707 GLN CYS PRO GLU ASP HELIX 1 1 THR A 40 TYR A 50 1 11 HELIX 2 2 GLU A 63 SER A 79 1 17 HELIX 3 3 ASP A 87 THR A 96 1 10 HELIX 4 4 PRO A 133 THR A 152 1 20 HELIX 5 5 ASN A 261 ASP A 266 1 6 HELIX 6 6 ASN A 319 LYS A 324 1 6 HELIX 7 7 ASN A 378 LYS A 383 1 6 HELIX 8 8 LEU A 395 GLY A 408 1 14 HELIX 9 9 HIS A 432 TYR A 443 1 12 HELIX 10 10 ALA A 557 LYS A 559 5 3 HELIX 11 11 ASP A 602 GLY A 605 5 4 HELIX 12 12 VAL A 650 PHE A 654 1 5 HELIX 13 13 VAL A 697 ILE A 701 1 5 SHEET 1 A 5 THR A 155 ARG A 158 0 SHEET 2 A 5 ASN A 120 ILE A 125 1 N ILE A 121 O THR A 155 SHEET 3 A 5 ILE A 166 GLY A 171 1 O ILE A 168 N TRP A 124 SHEET 4 A 5 ALA A 202 ASP A 205 1 O ALA A 202 N GLN A 169 SHEET 5 A 5 ALA A 189 ALA A 191 -1 N HIS A 190 O HIS A 203 SHEET 1 B 2 TRP A 210 SER A 211 0 SHEET 2 B 2 TYR A 393 SER A 394 1 O TYR A 393 N SER A 211 SHEET 1 C 2 PHE A 234 PHE A 236 0 SHEET 2 C 2 ARG A 239 TYR A 241 -1 O ARG A 239 N PHE A 236 SHEET 1 D 2 TRP A 255 SER A 257 0 SHEET 2 D 2 PHE A 268 PHE A 270 -1 O GLY A 269 N CYS A 256 SHEET 1 E 2 PHE A 292 ILE A 293 0 SHEET 2 E 2 SER A 298 TYR A 299 -1 O TYR A 299 N PHE A 292 SHEET 1 F 2 TRP A 313 ALA A 315 0 SHEET 2 F 2 PHE A 326 PHE A 328 -1 O GLY A 327 N CYS A 314 SHEET 1 G 2 PHE A 351 PHE A 353 0 SHEET 2 G 2 LYS A 356 TYR A 358 -1 O LYS A 356 N PHE A 353 SHEET 1 H 2 TRP A 372 ALA A 374 0 SHEET 2 H 2 TRP A 385 PHE A 387 -1 O GLY A 386 N CYS A 373 SHEET 1 I 4 ALA A 523 GLU A 526 0 SHEET 2 I 4 LEU A 531 PHE A 534 -1 O PHE A 534 N ALA A 523 SHEET 3 I 4 LYS A 538 PHE A 542 -1 O TRP A 540 N LEU A 533 SHEET 4 I 4 GLN A 551 LEU A 555 -1 O GLN A 551 N ARG A 541 SHEET 1 J 4 SER A 569 GLU A 573 0 SHEET 2 J 4 LYS A 578 SER A 583 -1 O PHE A 580 N PHE A 571 SHEET 3 J 4 GLN A 586 THR A 591 -1 O TYR A 590 N LEU A 579 SHEET 4 J 4 SER A 594 VAL A 595 -1 O SER A 594 N THR A 591 SHEET 1 K 4 SER A 569 GLU A 573 0 SHEET 2 K 4 LYS A 578 SER A 583 -1 O PHE A 580 N PHE A 571 SHEET 3 K 4 GLN A 586 THR A 591 -1 O TYR A 590 N LEU A 579 SHEET 4 K 4 ARG A 599 ARG A 600 -1 O ARG A 599 N VAL A 587 SHEET 1 L 4 GLY A 615 LEU A 617 0 SHEET 2 L 4 LYS A 623 SER A 628 -1 O PHE A 627 N GLY A 615 SHEET 3 L 4 ARG A 631 ASP A 636 -1 O ARG A 631 N SER A 628 SHEET 4 L 4 MET A 641 VAL A 642 -1 O MET A 641 N ASP A 636 SHEET 1 M 4 GLY A 615 LEU A 617 0 SHEET 2 M 4 LYS A 623 SER A 628 -1 O PHE A 627 N GLY A 615 SHEET 3 M 4 ARG A 631 ASP A 636 -1 O ARG A 631 N SER A 628 SHEET 4 M 4 SER A 648 GLU A 649 -1 O SER A 648 N LEU A 632 SHEET 1 N 4 ASP A 663 PHE A 665 0 SHEET 2 N 4 CYS A 674 ARG A 677 -1 O ASP A 676 N ASP A 663 SHEET 3 N 4 TRP A 680 VAL A 682 -1 O VAL A 682 N GLN A 675 SHEET 4 N 4 VAL A 694 TYR A 696 -1 O GLY A 695 N ARG A 681 SSBOND 1 CYS A 230 CYS A 256 SSBOND 2 CYS A 244 CYS A 271 SSBOND 3 CYS A 288 CYS A 314 SSBOND 4 CYS A 302 CYS A 329 SSBOND 5 CYS A 347 CYS A 373 SSBOND 6 CYS A 361 CYS A 388 CISPEP 1 PHE A 232 PRO A 233 0 -1.73 CISPEP 2 PHE A 290 PRO A 291 0 -4.52 CISPEP 3 PHE A 349 PRO A 350 0 -3.66 CISPEP 4 GLY A 552 PRO A 553 0 0.70 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 87 0 0 13 43 0 0 6 0 0 0 55 END