HEADER ISOMERASE 24-APR-02 1LK5 TITLE STRUCTURE OF THE D-RIBOSE-5-PHOSPHATE ISOMERASE FROM TITLE 2 PYROCOCCUS HORIKOSHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-RIBOSE-5-PHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 5.3.1.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 53953; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS ALPHA/BETA STRUCTURE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.ISHIKAWA,I.MATSUI,F.PAYAN,C.CAMBILLAU,H.ISHIDA, AUTHOR 2 Y.KAWARABAYASI,H.KIKUCHI,A.ROUSSEL REVDAT 3 24-FEB-09 1LK5 1 VERSN REVDAT 2 20-NOV-02 1LK5 1 REMARK REVDAT 1 03-JUL-02 1LK5 0 JRNL AUTH K.ISHIKAWA,I.MATSUI,F.PAYAN,C.CAMBILLAU,H.ISHIDA, JRNL AUTH 2 Y.KAWARABAYASI,H.KIKUCHI,A.ROUSSEL JRNL TITL A HYPERTHERMOSTABLE D-RIBOSE-5-PHOSPHATE ISOMERASE JRNL TITL 2 FROM PYROCOCCUS HORIKOSHII CHARACTERIZATION AND JRNL TITL 3 THREE-DIMENSIONAL STRUCTURE. JRNL REF STRUCTURE V. 10 877 2002 JRNL REFN ISSN 0969-2126 JRNL PMID 12057201 JRNL DOI 10.1016/S0969-2126(02)00779-7 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 100845 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 5101 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 342 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7064 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 644 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE WAS REFINED ALSO WITH REMARK 3 REFMAC REMARK 4 REMARK 4 1LK5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-APR-02. REMARK 100 THE RCSB ID CODE IS RCSB016018. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : ESRF; ROTATING ANODE REMARK 200 BEAMLINE : ID14-2; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9326; 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 100845 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES-NA BUFFER, 0.8M NA- REMARK 280 PHOSPHATE, 0.8M K-PHOSPHATE, PH 7.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.77400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.50850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.46600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.50850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.77400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.46600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS THE TETRAMER IN THE ASYMETRIC REMARK 300 UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -162.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 1020 O HOH D 1128 1.56 REMARK 500 O HOH C 1059 O HOH C 1174 1.62 REMARK 500 O HOH A 1092 O HOH A 1197 1.66 REMARK 500 O HOH C 1060 O HOH C 1175 1.73 REMARK 500 O HOH B 1122 O HOH C 1023 1.80 REMARK 500 O HOH B 1028 O HOH C 1173 1.82 REMARK 500 O HOH B 1142 O HOH B 1165 1.86 REMARK 500 O HOH A 1068 O HOH D 1127 1.88 REMARK 500 O HOH B 1120 O HOH B 1139 1.91 REMARK 500 O HOH A 1113 O HOH B 1139 1.93 REMARK 500 O HOH A 1023 O HOH A 1167 1.94 REMARK 500 O HOH A 1068 O HOH D 1140 1.97 REMARK 500 O HOH B 1028 O HOH C 1172 1.98 REMARK 500 O HOH A 1196 O HOH C 1108 1.99 REMARK 500 O HOH D 1106 O HOH D 1139 1.99 REMARK 500 OE2 GLU B 150 O HOH B 1162 1.99 REMARK 500 O HOH B 1122 O HOH B 1161 2.02 REMARK 500 SD MET A 106 NE2 GLN B 143 2.03 REMARK 500 OG SER C 73 NE2 GLN C 76 2.05 REMARK 500 O HOH A 1127 O HOH A 1196 2.06 REMARK 500 O HOH C 1172 O HOH C 1173 2.09 REMARK 500 OG SER D 73 NE2 GLN D 76 2.09 REMARK 500 OE1 GLU B 66 O HOH B 1167 2.09 REMARK 500 OE1 GLU D 4 OH TYR D 34 2.11 REMARK 500 O HOH A 1172 O HOH B 1095 2.12 REMARK 500 O HOH B 1119 O HOH B 1170 2.12 REMARK 500 O HOH C 1064 O HOH C 1164 2.13 REMARK 500 OE2 GLU A 66 O HOH A 1118 2.15 REMARK 500 O HOH D 1094 O HOH D 1109 2.15 REMARK 500 O HOH C 1046 O HOH C 1175 2.15 REMARK 500 O GLU B 150 OG SER B 153 2.16 REMARK 500 O HOH D 1044 O HOH D 1141 2.16 REMARK 500 O HOH A 1113 O HOH B 1120 2.16 REMARK 500 O HOH D 1031 O HOH D 1142 2.17 REMARK 500 OE2 GLU A 160 O HOH A 1187 2.17 REMARK 500 OE1 GLN A 143 SD MET B 106 2.17 REMARK 500 O HOH B 1118 O HOH D 1134 2.17 REMARK 500 O HOH B 1161 O HOH C 1023 2.18 REMARK 500 O HOH B 1093 O HOH B 1168 2.18 REMARK 500 O HOH A 1143 O HOH C 1113 2.18 REMARK 500 O HOH B 1032 O HOH B 1140 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP C 188 O HOH A 1166 3546 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 91 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP B 50 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 91 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP C 91 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP D 91 CB - CG - OD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP D 211 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 212 -39.48 -140.25 REMARK 500 CYS B 131 10.40 80.49 REMARK 500 ILE B 212 -39.05 -133.94 REMARK 500 ASN C 2 -179.48 -60.91 REMARK 500 ALA C 79 149.04 -173.19 REMARK 500 CYS C 131 15.07 85.28 REMARK 500 ILE C 212 -38.43 -133.77 REMARK 500 CYS D 131 10.80 84.01 REMARK 500 ILE D 212 -41.23 -135.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1011 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1016 O REMARK 620 2 HOH B1026 O 81.6 REMARK 620 3 ASN B 175 O 84.9 87.1 REMARK 620 4 HOH A1024 O 168.4 87.0 96.7 REMARK 620 5 ASN A 175 O 90.5 98.3 172.4 89.0 REMARK 620 6 HOH B1016 O 108.8 168.4 88.8 82.7 87.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C1012 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN C 175 O REMARK 620 2 HOH C1047 O 89.6 REMARK 620 3 HOH D1014 O 84.8 82.0 REMARK 620 4 HOH D1069 O 96.3 84.4 166.3 REMARK 620 5 ASN D 175 O 173.7 95.5 92.3 87.9 REMARK 620 6 HOH C1039 O 90.4 171.2 106.8 86.9 85.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1001 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1002 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 1003 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 1004 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1005 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1006 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 1007 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 1008 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1009 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1010 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1011 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA C 1012 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LK7 RELATED DB: PDB REMARK 900 1LK7 CONTAINS THE SAME PROTEIN COMPLEXED WITH PHOSPHO- REMARK 900 ERYTHRONIC ACID DBREF 1LK5 A 1 229 UNP O50083 RPIA_PYRHO 1 229 DBREF 1LK5 B 1 229 UNP O50083 RPIA_PYRHO 1 229 DBREF 1LK5 C 1 229 UNP O50083 RPIA_PYRHO 1 229 DBREF 1LK5 D 1 229 UNP O50083 RPIA_PYRHO 1 229 SEQRES 1 A 229 MET ASN VAL GLU GLU MET LYS LYS ILE ALA ALA LYS GLU SEQRES 2 A 229 ALA LEU LYS PHE ILE GLU ASP ASP MET VAL ILE GLY LEU SEQRES 3 A 229 GLY THR GLY SER THR THR ALA TYR PHE ILE LYS LEU LEU SEQRES 4 A 229 GLY GLU LYS LEU LYS ARG GLY GLU ILE SER ASP ILE VAL SEQRES 5 A 229 GLY VAL PRO THR SER TYR GLN ALA LYS LEU LEU ALA ILE SEQRES 6 A 229 GLU HIS ASP ILE PRO ILE ALA SER LEU ASP GLN VAL ASP SEQRES 7 A 229 ALA ILE ASP VAL ALA VAL ASP GLY ALA ASP GLU VAL ASP SEQRES 8 A 229 PRO ASN LEU ASN LEU ILE LYS GLY ARG GLY ALA ALA LEU SEQRES 9 A 229 THR MET GLU LYS ILE ILE GLU TYR ARG ALA GLY THR PHE SEQRES 10 A 229 ILE VAL LEU VAL ASP GLU ARG LYS LEU VAL ASP TYR LEU SEQRES 11 A 229 CYS GLN LYS MET PRO VAL PRO ILE GLU VAL ILE PRO GLN SEQRES 12 A 229 ALA TRP LYS ALA ILE ILE GLU GLU LEU SER ILE PHE ASN SEQRES 13 A 229 ALA LYS ALA GLU LEU ARG MET GLY VAL ASN LYS ASP GLY SEQRES 14 A 229 PRO VAL ILE THR ASP ASN GLY ASN PHE ILE ILE ASP ALA SEQRES 15 A 229 LYS PHE PRO ARG ILE ASP ASP PRO LEU ASP MET GLU ILE SEQRES 16 A 229 GLU LEU ASN THR ILE PRO GLY VAL ILE GLU ASN GLY ILE SEQRES 17 A 229 PHE ALA ASP ILE ALA ASP ILE VAL ILE VAL GLY THR ARG SEQRES 18 A 229 GLU GLY VAL LYS LYS LEU GLU ARG SEQRES 1 B 229 MET ASN VAL GLU GLU MET LYS LYS ILE ALA ALA LYS GLU SEQRES 2 B 229 ALA LEU LYS PHE ILE GLU ASP ASP MET VAL ILE GLY LEU SEQRES 3 B 229 GLY THR GLY SER THR THR ALA TYR PHE ILE LYS LEU LEU SEQRES 4 B 229 GLY GLU LYS LEU LYS ARG GLY GLU ILE SER ASP ILE VAL SEQRES 5 B 229 GLY VAL PRO THR SER TYR GLN ALA LYS LEU LEU ALA ILE SEQRES 6 B 229 GLU HIS ASP ILE PRO ILE ALA SER LEU ASP GLN VAL ASP SEQRES 7 B 229 ALA ILE ASP VAL ALA VAL ASP GLY ALA ASP GLU VAL ASP SEQRES 8 B 229 PRO ASN LEU ASN LEU ILE LYS GLY ARG GLY ALA ALA LEU SEQRES 9 B 229 THR MET GLU LYS ILE ILE GLU TYR ARG ALA GLY THR PHE SEQRES 10 B 229 ILE VAL LEU VAL ASP GLU ARG LYS LEU VAL ASP TYR LEU SEQRES 11 B 229 CYS GLN LYS MET PRO VAL PRO ILE GLU VAL ILE PRO GLN SEQRES 12 B 229 ALA TRP LYS ALA ILE ILE GLU GLU LEU SER ILE PHE ASN SEQRES 13 B 229 ALA LYS ALA GLU LEU ARG MET GLY VAL ASN LYS ASP GLY SEQRES 14 B 229 PRO VAL ILE THR ASP ASN GLY ASN PHE ILE ILE ASP ALA SEQRES 15 B 229 LYS PHE PRO ARG ILE ASP ASP PRO LEU ASP MET GLU ILE SEQRES 16 B 229 GLU LEU ASN THR ILE PRO GLY VAL ILE GLU ASN GLY ILE SEQRES 17 B 229 PHE ALA ASP ILE ALA ASP ILE VAL ILE VAL GLY THR ARG SEQRES 18 B 229 GLU GLY VAL LYS LYS LEU GLU ARG SEQRES 1 C 229 MET ASN VAL GLU GLU MET LYS LYS ILE ALA ALA LYS GLU SEQRES 2 C 229 ALA LEU LYS PHE ILE GLU ASP ASP MET VAL ILE GLY LEU SEQRES 3 C 229 GLY THR GLY SER THR THR ALA TYR PHE ILE LYS LEU LEU SEQRES 4 C 229 GLY GLU LYS LEU LYS ARG GLY GLU ILE SER ASP ILE VAL SEQRES 5 C 229 GLY VAL PRO THR SER TYR GLN ALA LYS LEU LEU ALA ILE SEQRES 6 C 229 GLU HIS ASP ILE PRO ILE ALA SER LEU ASP GLN VAL ASP SEQRES 7 C 229 ALA ILE ASP VAL ALA VAL ASP GLY ALA ASP GLU VAL ASP SEQRES 8 C 229 PRO ASN LEU ASN LEU ILE LYS GLY ARG GLY ALA ALA LEU SEQRES 9 C 229 THR MET GLU LYS ILE ILE GLU TYR ARG ALA GLY THR PHE SEQRES 10 C 229 ILE VAL LEU VAL ASP GLU ARG LYS LEU VAL ASP TYR LEU SEQRES 11 C 229 CYS GLN LYS MET PRO VAL PRO ILE GLU VAL ILE PRO GLN SEQRES 12 C 229 ALA TRP LYS ALA ILE ILE GLU GLU LEU SER ILE PHE ASN SEQRES 13 C 229 ALA LYS ALA GLU LEU ARG MET GLY VAL ASN LYS ASP GLY SEQRES 14 C 229 PRO VAL ILE THR ASP ASN GLY ASN PHE ILE ILE ASP ALA SEQRES 15 C 229 LYS PHE PRO ARG ILE ASP ASP PRO LEU ASP MET GLU ILE SEQRES 16 C 229 GLU LEU ASN THR ILE PRO GLY VAL ILE GLU ASN GLY ILE SEQRES 17 C 229 PHE ALA ASP ILE ALA ASP ILE VAL ILE VAL GLY THR ARG SEQRES 18 C 229 GLU GLY VAL LYS LYS LEU GLU ARG SEQRES 1 D 229 MET ASN VAL GLU GLU MET LYS LYS ILE ALA ALA LYS GLU SEQRES 2 D 229 ALA LEU LYS PHE ILE GLU ASP ASP MET VAL ILE GLY LEU SEQRES 3 D 229 GLY THR GLY SER THR THR ALA TYR PHE ILE LYS LEU LEU SEQRES 4 D 229 GLY GLU LYS LEU LYS ARG GLY GLU ILE SER ASP ILE VAL SEQRES 5 D 229 GLY VAL PRO THR SER TYR GLN ALA LYS LEU LEU ALA ILE SEQRES 6 D 229 GLU HIS ASP ILE PRO ILE ALA SER LEU ASP GLN VAL ASP SEQRES 7 D 229 ALA ILE ASP VAL ALA VAL ASP GLY ALA ASP GLU VAL ASP SEQRES 8 D 229 PRO ASN LEU ASN LEU ILE LYS GLY ARG GLY ALA ALA LEU SEQRES 9 D 229 THR MET GLU LYS ILE ILE GLU TYR ARG ALA GLY THR PHE SEQRES 10 D 229 ILE VAL LEU VAL ASP GLU ARG LYS LEU VAL ASP TYR LEU SEQRES 11 D 229 CYS GLN LYS MET PRO VAL PRO ILE GLU VAL ILE PRO GLN SEQRES 12 D 229 ALA TRP LYS ALA ILE ILE GLU GLU LEU SER ILE PHE ASN SEQRES 13 D 229 ALA LYS ALA GLU LEU ARG MET GLY VAL ASN LYS ASP GLY SEQRES 14 D 229 PRO VAL ILE THR ASP ASN GLY ASN PHE ILE ILE ASP ALA SEQRES 15 D 229 LYS PHE PRO ARG ILE ASP ASP PRO LEU ASP MET GLU ILE SEQRES 16 D 229 GLU LEU ASN THR ILE PRO GLY VAL ILE GLU ASN GLY ILE SEQRES 17 D 229 PHE ALA ASP ILE ALA ASP ILE VAL ILE VAL GLY THR ARG SEQRES 18 D 229 GLU GLY VAL LYS LYS LEU GLU ARG HET CL A1001 1 HET CL B1002 1 HET CL C1003 1 HET CL D1004 1 HET CL A1005 1 HET CL B1006 1 HET CL C1007 1 HET CL D1008 1 HET CL A1009 1 HET CL B1010 1 HET NA A1011 1 HET NA C1012 1 HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 5 CL 10(CL 1-) FORMUL 15 NA 2(NA 1+) FORMUL 17 HOH *644(H2 O) HELIX 1 1 ASN A 2 LEU A 15 1 14 HELIX 2 2 LYS A 16 ILE A 18 5 3 HELIX 3 3 GLY A 29 ARG A 45 1 17 HELIX 4 4 SER A 57 HIS A 67 1 11 HELIX 5 5 SER A 73 VAL A 77 5 5 HELIX 6 6 ALA A 103 ARG A 113 1 11 HELIX 7 7 ARG A 124 LEU A 126 5 3 HELIX 8 8 ALA A 144 LEU A 152 1 9 HELIX 9 9 SER A 153 ASN A 156 5 4 HELIX 10 10 ASP A 189 THR A 199 1 11 HELIX 11 11 ASN B 2 LYS B 16 1 15 HELIX 12 12 GLY B 29 ARG B 45 1 17 HELIX 13 13 SER B 57 HIS B 67 1 11 HELIX 14 14 SER B 73 VAL B 77 5 5 HELIX 15 15 ALA B 103 TYR B 112 1 10 HELIX 16 16 ARG B 124 LEU B 126 5 3 HELIX 17 17 ALA B 144 SER B 153 1 10 HELIX 18 18 ILE B 154 ASN B 156 5 3 HELIX 19 19 ASP B 189 THR B 199 1 11 HELIX 20 20 ASN C 2 LEU C 15 1 14 HELIX 21 21 LYS C 16 ILE C 18 5 3 HELIX 22 22 GLY C 29 ARG C 45 1 17 HELIX 23 23 SER C 57 HIS C 67 1 11 HELIX 24 24 SER C 73 VAL C 77 5 5 HELIX 25 25 ALA C 103 ARG C 113 1 11 HELIX 26 26 ARG C 124 LEU C 126 5 3 HELIX 27 27 ALA C 144 PHE C 155 1 12 HELIX 28 28 ASP C 189 ASN C 198 1 10 HELIX 29 29 ASN D 2 LYS D 16 1 15 HELIX 30 30 GLY D 29 ARG D 45 1 17 HELIX 31 31 SER D 57 HIS D 67 1 11 HELIX 32 32 SER D 73 VAL D 77 5 5 HELIX 33 33 ALA D 103 ARG D 113 1 11 HELIX 34 34 ARG D 124 LEU D 126 5 3 HELIX 35 35 ALA D 144 LEU D 152 1 9 HELIX 36 36 SER D 153 ASN D 156 5 4 HELIX 37 37 ASP D 189 THR D 199 1 11 SHEET 1 A 6 VAL A 52 PRO A 55 0 SHEET 2 A 6 VAL A 23 LEU A 26 1 N ILE A 24 O VAL A 52 SHEET 3 A 6 ILE A 80 ASP A 85 1 O VAL A 84 N GLY A 25 SHEET 4 A 6 ALA A 114 ASP A 122 1 O ILE A 118 N ALA A 83 SHEET 5 A 6 ILE A 215 THR A 220 1 O ILE A 217 N VAL A 119 SHEET 6 A 6 GLY A 223 GLU A 228 -1 O LYS A 225 N VAL A 218 SHEET 1 B 3 GLU A 89 VAL A 90 0 SHEET 2 B 3 LEU A 96 ILE A 97 -1 O ILE A 97 N GLU A 89 SHEET 3 B 3 ILE A 208 PHE A 209 -1 O PHE A 209 N LEU A 96 SHEET 1 C 4 LYS A 158 LEU A 161 0 SHEET 2 C 4 PHE A 178 LYS A 183 -1 O ASP A 181 N GLU A 160 SHEET 3 C 4 VAL A 136 VAL A 140 -1 N VAL A 136 O ALA A 182 SHEET 4 C 4 VAL A 203 ASN A 206 -1 O ILE A 204 N GLU A 139 SHEET 1 D 6 VAL B 52 PRO B 55 0 SHEET 2 D 6 VAL B 23 LEU B 26 1 N ILE B 24 O VAL B 52 SHEET 3 D 6 ILE B 80 ASP B 85 1 O VAL B 82 N GLY B 25 SHEET 4 D 6 ALA B 114 ASP B 122 1 O ILE B 118 N ALA B 83 SHEET 5 D 6 ILE B 215 GLY B 219 1 O ILE B 217 N VAL B 119 SHEET 6 D 6 VAL B 224 GLU B 228 -1 O LEU B 227 N VAL B 216 SHEET 1 E 3 GLU B 89 VAL B 90 0 SHEET 2 E 3 LEU B 96 ILE B 97 -1 O ILE B 97 N GLU B 89 SHEET 3 E 3 ILE B 208 PHE B 209 -1 O PHE B 209 N LEU B 96 SHEET 1 F 4 LYS B 158 LEU B 161 0 SHEET 2 F 4 PHE B 178 LYS B 183 -1 O ASP B 181 N GLU B 160 SHEET 3 F 4 VAL B 136 VAL B 140 -1 N VAL B 136 O ALA B 182 SHEET 4 F 4 VAL B 203 ASN B 206 -1 O ILE B 204 N GLU B 139 SHEET 1 G 6 ILE C 51 PRO C 55 0 SHEET 2 G 6 MET C 22 LEU C 26 1 N ILE C 24 O VAL C 52 SHEET 3 G 6 ILE C 80 GLY C 86 1 O VAL C 84 N GLY C 25 SHEET 4 G 6 ALA C 114 ASP C 122 1 O ILE C 118 N ALA C 83 SHEET 5 G 6 ILE C 215 THR C 220 1 O ILE C 217 N VAL C 119 SHEET 6 G 6 GLY C 223 GLU C 228 -1 O LYS C 225 N VAL C 218 SHEET 1 H 3 GLU C 89 VAL C 90 0 SHEET 2 H 3 LEU C 96 ILE C 97 -1 O ILE C 97 N GLU C 89 SHEET 3 H 3 ILE C 208 PHE C 209 -1 O PHE C 209 N LEU C 96 SHEET 1 I 4 LYS C 158 LEU C 161 0 SHEET 2 I 4 PHE C 178 LYS C 183 -1 O LYS C 183 N LYS C 158 SHEET 3 I 4 VAL C 136 VAL C 140 -1 N VAL C 136 O ALA C 182 SHEET 4 I 4 VAL C 203 ASN C 206 -1 O ILE C 204 N GLU C 139 SHEET 1 J 6 VAL D 52 PRO D 55 0 SHEET 2 J 6 VAL D 23 LEU D 26 1 N ILE D 24 O VAL D 52 SHEET 3 J 6 ILE D 80 ASP D 85 1 O VAL D 82 N GLY D 25 SHEET 4 J 6 ALA D 114 ASP D 122 1 O ILE D 118 N ALA D 83 SHEET 5 J 6 ILE D 215 THR D 220 1 O ILE D 217 N VAL D 119 SHEET 6 J 6 GLY D 223 GLU D 228 -1 O LYS D 225 N VAL D 218 SHEET 1 K 3 GLU D 89 VAL D 90 0 SHEET 2 K 3 LEU D 96 ILE D 97 -1 O ILE D 97 N GLU D 89 SHEET 3 K 3 ILE D 208 PHE D 209 -1 O PHE D 209 N LEU D 96 SHEET 1 L 4 LYS D 158 LEU D 161 0 SHEET 2 L 4 PHE D 178 LYS D 183 -1 O LYS D 183 N LYS D 158 SHEET 3 L 4 VAL D 136 VAL D 140 -1 N VAL D 136 O ALA D 182 SHEET 4 L 4 VAL D 203 ASN D 206 -1 O ILE D 204 N GLU D 139 LINK NA NA A1011 O HOH A1016 1555 1555 2.53 LINK NA NA A1011 O HOH B1026 1555 1555 2.37 LINK NA NA A1011 O ASN B 175 1555 1555 2.32 LINK NA NA A1011 O HOH A1024 1555 1555 2.35 LINK NA NA A1011 O ASN A 175 1555 1555 2.29 LINK NA NA A1011 O HOH B1016 1555 1555 2.52 LINK NA NA C1012 O ASN C 175 1555 1555 2.35 LINK NA NA C1012 O HOH C1047 1555 1555 2.40 LINK NA NA C1012 O HOH D1014 1555 1555 2.47 LINK NA NA C1012 O HOH D1069 1555 1555 2.25 LINK NA NA C1012 O ASN D 175 1555 1555 2.34 LINK NA NA C1012 O HOH C1039 1555 1555 2.54 SITE 1 AC1 5 GLY A 99 GLY A 101 ALA A 102 ALA A 103 SITE 2 AC1 5 GLU A 107 SITE 1 AC2 6 GLY B 99 GLY B 101 ALA B 102 ALA B 103 SITE 2 AC2 6 GLU B 107 HOH B1017 SITE 1 AC3 5 GLY C 99 GLY C 101 ALA C 102 ALA C 103 SITE 2 AC3 5 GLU C 107 SITE 1 AC4 6 GLY D 99 GLY D 101 ALA D 102 ALA D 103 SITE 2 AC4 6 GLU D 107 HOH D1020 SITE 1 AC5 7 SER A 57 TYR A 58 GLN A 59 ASP A 174 SITE 2 AC5 7 LYS C 167 ASP C 168 GLY C 169 SITE 1 AC6 6 TYR B 58 GLN B 59 ASP B 174 LYS D 167 SITE 2 AC6 6 ASP D 168 GLY D 169 SITE 1 AC7 7 LYS A 167 ASP A 168 GLY A 169 SER C 57 SITE 2 AC7 7 TYR C 58 GLN C 59 ASP C 174 SITE 1 AC8 7 LYS B 167 ASP B 168 GLY B 169 SER D 57 SITE 2 AC8 7 TYR D 58 GLN D 59 ASP D 174 SITE 1 AC9 4 VAL A 165 ASN A 166 VAL C 165 ASN C 166 SITE 1 BC1 4 VAL B 165 ASN B 166 VAL D 165 ASN D 166 SITE 1 BC2 6 ASN A 175 HOH A1016 HOH A1024 ASN B 175 SITE 2 BC2 6 HOH B1016 HOH B1026 SITE 1 BC3 6 ASN C 175 HOH C1039 HOH C1047 ASN D 175 SITE 2 BC3 6 HOH D1014 HOH D1069 CRYST1 73.548 114.932 119.017 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013597 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008701 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008402 0.00000 MASTER 406 0 12 37 52 0 22 6 0 0 0 72 END