HEADER BINDING PROTEIN 17-AUG-95 1LDR TITLE SECOND REPEAT OF THE LDL RECEPTOR LIGAND-BINDING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: LOW-DENSITY LIPOPROTEIN RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIGAND-BINDING DOMAIN, SECOND REPEAT; COMPND 5 SYNONYM: LB2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HUMAN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-2T; SOURCE 9 EXPRESSION_SYSTEM_GENE: HUMAN KEYWDS LDL RECEPTOR CYSTEINE-RICH REPEAT, BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR N.L.DALY,J.T.DJORDJEVIC,P.A.KROON,R.SMITH REVDAT 2 24-FEB-09 1LDR 1 VERSN REVDAT 1 08-MAR-96 1LDR 0 JRNL AUTH N.L.DALY,J.T.DJORDJEVIC,P.A.KROON,R.SMITH JRNL TITL THREE-DIMENSIONAL STRUCTURE OF THE SECOND JRNL TITL 2 CYSTEINE-RICH REPEAT FROM THE HUMAN LOW-DENSITY JRNL TITL 3 LIPOPROTEIN RECEPTOR. JRNL REF BIOCHEMISTRY V. 34 14474 1995 JRNL REFN ISSN 0006-2960 JRNL PMID 7578052 JRNL DOI 10.1021/BI00044A025 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.L.DALY,M.J.SCANLON,J.T.DJORDJEVIC,P.A.KROON, REMARK 1 AUTH 2 R.SMITH REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF A CYSTEINE-RICH REMARK 1 TITL 2 REPEAT OF THE LOW-DENSITY LIPOPROTEIN RECEPTOR REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 92 6334 1995 REMARK 1 REFN ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LDR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 6 -170.16 58.10 REMARK 500 1 PHE A 10 109.14 -172.99 REMARK 500 1 ARG A 15 72.96 58.33 REMARK 500 1 ASN A 17 -35.36 179.68 REMARK 500 1 CYS A 26 -56.32 86.27 REMARK 500 1 ASP A 27 -76.17 -92.47 REMARK 500 1 GLN A 29 -111.32 57.25 REMARK 500 1 VAL A 30 53.67 -148.43 REMARK 500 1 ASP A 33 -90.40 60.42 REMARK 500 1 SER A 36 68.48 -163.93 REMARK 500 1 GLN A 39 62.07 -101.72 REMARK 500 2 VAL A 3 101.13 -58.79 REMARK 500 2 CYS A 5 -51.36 84.05 REMARK 500 2 LYS A 6 -166.14 67.11 REMARK 500 2 ARG A 18 103.35 -166.37 REMARK 500 2 CYS A 26 -54.64 86.72 REMARK 500 2 ASP A 27 -76.24 -93.74 REMARK 500 2 GLN A 29 -120.20 52.49 REMARK 500 2 ASP A 33 -78.37 -64.40 REMARK 500 2 ASN A 34 40.16 -100.90 REMARK 500 3 SER A 2 91.19 58.67 REMARK 500 3 CYS A 5 80.45 59.22 REMARK 500 3 SER A 7 -73.17 -157.85 REMARK 500 3 PHE A 10 121.91 -173.20 REMARK 500 3 CYS A 26 -56.25 85.39 REMARK 500 3 ASP A 27 -78.14 -96.29 REMARK 500 3 GLN A 29 -110.58 52.49 REMARK 500 3 VAL A 30 72.22 -154.23 REMARK 500 3 GLU A 38 54.56 -97.24 REMARK 500 3 GLN A 39 55.26 -93.66 REMARK 500 4 THR A 4 -90.55 53.10 REMARK 500 4 LYS A 6 -161.97 67.02 REMARK 500 4 ASP A 9 -168.40 -109.76 REMARK 500 4 PHE A 10 133.74 -176.37 REMARK 500 4 VAL A 16 -75.04 -59.00 REMARK 500 4 ASN A 17 -38.68 179.86 REMARK 500 4 CYS A 26 -58.78 85.88 REMARK 500 4 ASP A 27 -77.85 -91.25 REMARK 500 4 GLN A 29 -113.18 55.97 REMARK 500 4 VAL A 30 63.49 -151.09 REMARK 500 5 SER A 2 79.39 -116.84 REMARK 500 5 CYS A 5 69.74 35.68 REMARK 500 5 LYS A 6 53.10 -95.68 REMARK 500 5 ASP A 9 -167.86 -105.43 REMARK 500 5 PHE A 10 125.91 -172.95 REMARK 500 5 ARG A 18 141.75 -171.73 REMARK 500 5 CYS A 26 -57.47 84.93 REMARK 500 5 ASP A 27 -78.69 -94.88 REMARK 500 5 GLN A 29 -114.40 55.68 REMARK 500 5 VAL A 30 71.37 -153.00 REMARK 500 5 ASP A 33 -148.31 50.19 REMARK 500 5 GLN A 39 71.83 -101.03 REMARK 500 6 THR A 4 -170.94 50.94 REMARK 500 6 LYS A 6 -161.75 58.89 REMARK 500 6 PHE A 10 135.56 -177.60 REMARK 500 6 ARG A 15 79.16 -109.55 REMARK 500 6 CYS A 26 -54.84 85.99 REMARK 500 6 ASP A 27 -78.98 -102.37 REMARK 500 6 GLN A 29 -119.24 51.87 REMARK 500 6 VAL A 30 59.12 -149.92 REMARK 500 6 SER A 36 32.94 -176.48 REMARK 500 7 SER A 2 30.72 -157.67 REMARK 500 7 THR A 4 -78.83 -106.58 REMARK 500 7 CYS A 5 59.79 -172.12 REMARK 500 7 LYS A 6 -174.80 57.64 REMARK 500 7 SER A 7 44.60 -102.38 REMARK 500 7 ASP A 9 -164.92 -70.08 REMARK 500 7 PHE A 10 120.72 -174.54 REMARK 500 7 ARG A 15 104.04 58.68 REMARK 500 7 ARG A 18 138.39 64.23 REMARK 500 7 CYS A 26 -55.39 85.82 REMARK 500 7 ASP A 27 -73.90 -89.55 REMARK 500 7 GLN A 29 -117.24 56.33 REMARK 500 7 VAL A 30 55.83 -147.63 REMARK 500 7 SER A 36 26.72 -154.55 REMARK 500 8 SER A 2 178.67 55.69 REMARK 500 8 THR A 4 -167.26 57.02 REMARK 500 8 LYS A 6 177.03 60.06 REMARK 500 8 PHE A 10 133.49 -172.16 REMARK 500 8 ARG A 15 75.10 -162.95 REMARK 500 8 CYS A 26 -51.43 85.38 REMARK 500 8 ASP A 27 -77.74 -95.82 REMARK 500 8 GLN A 29 -113.49 52.55 REMARK 500 8 VAL A 30 69.73 -152.33 REMARK 500 8 ASP A 33 -80.52 -68.40 REMARK 500 9 SER A 2 24.94 -143.67 REMARK 500 9 CYS A 5 82.53 57.93 REMARK 500 9 SER A 7 111.25 62.47 REMARK 500 9 PHE A 10 108.27 -165.93 REMARK 500 9 VAL A 16 94.05 37.86 REMARK 500 9 ASN A 17 98.38 -47.01 REMARK 500 9 CYS A 26 -50.04 87.71 REMARK 500 9 GLN A 29 -122.76 60.96 REMARK 500 9 VAL A 30 55.50 -145.56 REMARK 500 9 ASP A 33 86.29 56.56 REMARK 500 9 SER A 36 17.55 -161.56 REMARK 500 10 THR A 4 -50.33 -126.23 REMARK 500 10 CYS A 5 -73.10 -134.32 REMARK 500 10 LYS A 6 -45.94 -147.05 REMARK 500 10 SER A 7 -66.15 -176.03 REMARK 500 10 ASP A 9 -168.47 -71.38 REMARK 500 10 PHE A 10 120.22 -173.64 REMARK 500 10 ARG A 18 144.18 -175.48 REMARK 500 10 CYS A 26 -51.13 85.35 REMARK 500 10 ASP A 27 -79.37 -96.51 REMARK 500 10 GLN A 29 -112.37 53.09 REMARK 500 10 VAL A 30 66.28 -151.04 REMARK 500 10 ASP A 33 78.62 39.23 REMARK 500 10 SER A 36 31.39 -175.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 15 0.30 SIDE_CHAIN REMARK 500 1 ARG A 18 0.32 SIDE_CHAIN REMARK 500 1 ARG A 25 0.32 SIDE_CHAIN REMARK 500 2 ARG A 15 0.24 SIDE_CHAIN REMARK 500 2 ARG A 18 0.30 SIDE_CHAIN REMARK 500 2 ARG A 25 0.31 SIDE_CHAIN REMARK 500 3 ARG A 15 0.30 SIDE_CHAIN REMARK 500 3 ARG A 18 0.24 SIDE_CHAIN REMARK 500 3 ARG A 25 0.29 SIDE_CHAIN REMARK 500 4 ARG A 15 0.30 SIDE_CHAIN REMARK 500 4 ARG A 18 0.28 SIDE_CHAIN REMARK 500 4 ARG A 25 0.31 SIDE_CHAIN REMARK 500 5 ARG A 15 0.26 SIDE_CHAIN REMARK 500 5 ARG A 18 0.26 SIDE_CHAIN REMARK 500 5 ARG A 25 0.29 SIDE_CHAIN REMARK 500 6 ARG A 15 0.24 SIDE_CHAIN REMARK 500 6 ARG A 18 0.32 SIDE_CHAIN REMARK 500 6 ARG A 25 0.31 SIDE_CHAIN REMARK 500 7 ARG A 15 0.31 SIDE_CHAIN REMARK 500 7 ARG A 18 0.31 SIDE_CHAIN REMARK 500 7 ARG A 25 0.30 SIDE_CHAIN REMARK 500 8 ARG A 15 0.20 SIDE_CHAIN REMARK 500 8 ARG A 18 0.31 SIDE_CHAIN REMARK 500 8 ARG A 25 0.29 SIDE_CHAIN REMARK 500 9 ARG A 15 0.31 SIDE_CHAIN REMARK 500 9 ARG A 18 0.32 SIDE_CHAIN REMARK 500 9 ARG A 25 0.24 SIDE_CHAIN REMARK 500 10 ARG A 15 0.20 SIDE_CHAIN REMARK 500 10 ARG A 18 0.32 SIDE_CHAIN REMARK 500 10 ARG A 25 0.27 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1LDR A -1 41 UNP P01130 LDLR_HUMAN 55 104 SEQADV 1LDR A UNP P01130 ASP 57 DELETION SEQADV 1LDR A UNP P01130 GLU 58 DELETION SEQADV 1LDR A UNP P01130 SER 59 DELETION SEQADV 1LDR A UNP P01130 GLN 60 DELETION SEQADV 1LDR A UNP P01130 GLU 61 DELETION SEQADV 1LDR A UNP P01130 THR 62 DELETION SEQADV 1LDR A UNP P01130 CYS 63 DELETION SEQRES 1 A 43 GLY SER LEU SER VAL THR CYS LYS SER GLY ASP PHE SER SEQRES 2 A 43 CYS GLY GLY ARG VAL ASN ARG CYS ILE PRO GLN PHE TRP SEQRES 3 A 43 ARG CYS ASP GLY GLN VAL ASP CYS ASP ASN GLY SER ASP SEQRES 4 A 43 GLU GLN GLY CYS SSBOND 1 CYS A 5 CYS A 19 1555 1555 2.02 SSBOND 2 CYS A 12 CYS A 32 1555 1555 2.02 SSBOND 3 CYS A 26 CYS A 41 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 231 0 0 0 0 0 0 6 0 0 0 4 END