HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 18-MAR-02 1L7Y TITLE SOLUTION NMR STRUCTURE OF C. ELEGANS PROTEIN ZK652.3. TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET WR41. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN ZK652.3; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 GENE: ZK652.3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS C.ELEGANS, UNKNOWN FUNCTION, NORTHEAST STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, ZK652.3, UBIQUITIN FOLD, BETA-GRASP FOLD, UFM1, KEYWDS 3 UBIQUITIN-FOLD MODIFIER 1, NESG, STRUCTURAL GENOMICS, KEYWDS 4 STRUCTURAL PROTEOMICS, HYPOTHETICAL, PSI, PROTEIN STRUCTURE KEYWDS 5 INITIATIVE EXPDTA SOLUTION NMR NUMMDL 24 AUTHOR J.R.CORT,Y.CHIANG,D.ZHENG,G.T.MONTELIONE,M.A.KENNEDY, AUTHOR 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 24-FEB-09 1L7Y 1 VERSN REVDAT 3 27-MAY-08 1L7Y 1 KEYWDS REVDAT 2 25-JAN-05 1L7Y 1 AUTHOR KEYWDS REMARK REVDAT 1 14-AUG-02 1L7Y 0 JRNL AUTH J.R.CORT,Y.CHIANG,D.ZHENG,G.T.MONTELIONE, JRNL AUTH 2 M.A.KENNEDY JRNL TITL NMR STRUCTURE OF CONSERVED EUKARYOTIC PROTEIN JRNL TITL 2 ZK652.3 FROM C. ELEGANS: A UBIQUITIN-LIKE FOLD. JRNL REF PROTEINS V. 48 733 2002 JRNL REFN ISSN 0887-3585 JRNL PMID 12211038 JRNL DOI 10.1002/PROT.10197 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.840 REMARK 3 AUTHORS : A.T. BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE X-PLOR ROUTINES DG_FULL_ REMARK 3 EMBED.INP, DGSA.INP, AND REFINE_GENTLE.INP WERE USED TO REMARK 3 PRODUCE THE STRUCTURAL ENSEMBLE REMARK 4 REMARK 4 1L7Y COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAR-02. REMARK 100 THE RCSB ID CODE IS RCSB015728. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 10 MM AMMONIUM ACETATE, 50 MM REMARK 210 NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.9 MM 99%-13C,99%-15N- REMARK 210 ZK652.3 10 MM AMMONIUM REMARK 210 ACETATE, 50 MM NACL, 10 MM REMARK 210 DTT, 5% D2O, PH 5.5; 0.9 MM REMARK 210 13C,15N-ZK652.3 10 MM AMMONIUM REMARK 210 ACETATE, 50 MM NACL, 10 MM REMARK 210 DTT, 99% D2O; 0.9 MM 10%-13C, REMARK 210 99%-15N-ZK652.3 10 MM AMMONIUM REMARK 210 ACETATE, 50 MM NACL, 10 MM REMARK 210 DTT, 5% D2O, PH 5.5; 0.9 MM REMARK 210 99%-15N-ZK652.3 10 MM AMMONIUM REMARK 210 ACETATE, 50 MM NACL, 10 MM REMARK 210 DTT, 5% D2O, PH 5.5 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 4D_13C-SEPARATED_NOESY, 3D_ REMARK 210 SIMULTANEOUS_13C,15N-SEPARATED_NOESY, HNHA, 3D_15N-SEPARATED_ REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 600 MHZ, 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA, UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1, FELIX 98, X-PLOR REMARK 210 3.840 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 26 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 24 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 9 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 70 -41.72 -132.96 REMARK 500 2 THR A 5 -70.40 -112.20 REMARK 500 2 ALA A 6 -120.76 -96.04 REMARK 500 2 ALA A 7 55.10 -103.80 REMARK 500 2 LYS A 25 124.74 67.42 REMARK 500 2 ALA A 70 -42.69 -135.52 REMARK 500 2 SER A 82 -50.87 -124.20 REMARK 500 3 THR A 5 -44.62 -143.03 REMARK 500 3 THR A 8 -72.21 -128.43 REMARK 500 3 THR A 9 -62.83 -138.09 REMARK 500 3 GLU A 83 106.43 -58.20 REMARK 500 4 THR A 5 130.88 67.91 REMARK 500 4 GLU A 35 82.73 -66.62 REMARK 500 4 SER A 36 -38.80 178.77 REMARK 500 4 PHE A 50 -83.26 -83.21 REMARK 500 4 LYS A 51 33.59 174.83 REMARK 500 4 ALA A 70 31.14 -142.34 REMARK 500 4 VAL A 92 -63.59 -107.95 REMARK 500 5 THR A 5 49.05 -155.00 REMARK 500 5 ALA A 10 -61.22 -128.50 REMARK 500 5 LYS A 25 73.48 -167.73 REMARK 500 5 LEU A 26 -66.10 -145.96 REMARK 500 5 GLU A 35 83.23 -64.72 REMARK 500 5 SER A 36 -39.33 -179.13 REMARK 500 5 ALA A 70 34.32 -144.35 REMARK 500 5 ARG A 89 144.26 71.38 REMARK 500 6 SER A 2 97.06 69.37 REMARK 500 6 GLU A 35 83.49 -65.05 REMARK 500 6 SER A 36 -37.62 -179.78 REMARK 500 6 LYS A 51 33.70 76.45 REMARK 500 6 ALA A 70 31.06 -153.80 REMARK 500 6 HIS A 80 -62.81 -93.33 REMARK 500 6 ASP A 90 78.25 -115.93 REMARK 500 7 ALA A 7 34.51 -93.56 REMARK 500 7 THR A 9 135.28 73.89 REMARK 500 7 LEU A 26 -58.22 -176.42 REMARK 500 7 PHE A 50 -81.97 -80.31 REMARK 500 7 LYS A 51 36.27 175.14 REMARK 500 7 ALA A 70 -39.82 -131.72 REMARK 500 7 HIS A 80 -65.28 -90.90 REMARK 500 7 ARG A 89 119.76 69.46 REMARK 500 7 ARG A 91 -153.38 -91.65 REMARK 500 8 ALA A 70 -43.40 -134.84 REMARK 500 8 HIS A 80 -63.42 -100.60 REMARK 500 8 GLU A 83 99.27 -62.81 REMARK 500 8 ASP A 90 106.55 63.90 REMARK 500 9 SER A 2 -55.83 -127.07 REMARK 500 9 THR A 5 -64.19 -105.81 REMARK 500 9 ALA A 70 -48.65 -139.80 REMARK 500 9 HIS A 80 -62.31 -94.19 REMARK 500 9 VAL A 92 89.52 57.41 REMARK 500 10 SER A 12 -63.48 -133.11 REMARK 500 11 ALA A 6 100.19 70.82 REMARK 500 11 SER A 12 40.02 -143.61 REMARK 500 11 LYS A 25 -88.04 63.10 REMARK 500 11 LEU A 26 163.39 66.25 REMARK 500 11 GLU A 35 82.78 -64.65 REMARK 500 11 SER A 36 -39.61 -179.58 REMARK 500 12 PRO A 24 -167.90 -76.43 REMARK 500 12 PHE A 50 -83.01 -81.13 REMARK 500 12 LYS A 51 37.12 175.11 REMARK 500 12 ALA A 70 -39.18 -133.44 REMARK 500 12 HIS A 80 -60.34 -98.55 REMARK 500 12 VAL A 92 -103.70 -95.90 REMARK 500 13 THR A 21 52.20 -98.96 REMARK 500 13 SER A 22 -54.89 -149.58 REMARK 500 13 GLU A 35 83.49 -65.79 REMARK 500 13 SER A 36 -36.60 178.56 REMARK 500 13 ALA A 70 -48.38 -141.75 REMARK 500 14 SER A 22 57.80 -91.70 REMARK 500 14 LYS A 25 -154.74 65.40 REMARK 500 14 GLU A 35 83.53 -66.01 REMARK 500 14 SER A 36 -38.51 -179.99 REMARK 500 14 ALA A 70 18.33 -146.69 REMARK 500 14 HIS A 80 -65.27 -106.54 REMARK 500 14 GLU A 83 106.84 -59.01 REMARK 500 14 ARG A 89 113.20 -167.96 REMARK 500 15 SER A 2 -54.93 -150.53 REMARK 500 15 LEU A 26 124.74 65.34 REMARK 500 15 GLU A 83 105.02 -59.73 REMARK 500 16 LEU A 26 106.35 65.39 REMARK 500 16 PHE A 50 -83.17 -83.58 REMARK 500 16 LYS A 51 35.77 176.32 REMARK 500 16 HIS A 80 -65.25 -96.26 REMARK 500 16 ARG A 89 89.12 62.07 REMARK 500 17 ALA A 7 72.72 49.33 REMARK 500 17 SER A 12 -62.65 -103.90 REMARK 500 17 ALA A 70 -31.13 -133.02 REMARK 500 17 ARG A 91 -68.96 -130.04 REMARK 500 18 THR A 5 117.34 -161.21 REMARK 500 18 ALA A 7 -58.80 -134.25 REMARK 500 18 LEU A 26 65.25 62.61 REMARK 500 18 GLU A 35 83.29 -64.91 REMARK 500 18 SER A 36 -39.77 -179.17 REMARK 500 18 ALA A 70 -32.91 -130.06 REMARK 500 18 ASP A 90 -50.87 -132.19 REMARK 500 19 ALA A 6 -55.12 -173.89 REMARK 500 19 SER A 12 67.74 -114.44 REMARK 500 19 SER A 22 -65.18 -158.66 REMARK 500 19 LEU A 26 107.86 67.52 REMARK 500 19 LYS A 51 37.81 70.32 REMARK 500 19 GLU A 83 105.79 -56.70 REMARK 500 19 ARG A 89 128.20 71.97 REMARK 500 20 ALA A 70 -41.84 -134.12 REMARK 500 20 ARG A 89 143.18 70.55 REMARK 500 20 VAL A 92 78.22 70.03 REMARK 500 21 SER A 2 84.10 57.66 REMARK 500 21 ALA A 70 -43.41 -136.54 REMARK 500 21 HIS A 80 -61.73 -97.43 REMARK 500 21 GLU A 83 105.79 -59.38 REMARK 500 21 ARG A 89 167.67 65.47 REMARK 500 21 ASP A 90 152.90 69.51 REMARK 500 22 ALA A 7 124.02 68.80 REMARK 500 23 ASP A 23 67.58 60.13 REMARK 500 23 LYS A 25 -34.76 77.61 REMARK 500 23 THR A 56 41.25 -107.20 REMARK 500 23 ALA A 70 -45.88 -141.91 REMARK 500 23 ARG A 89 141.34 71.40 REMARK 500 24 SER A 12 -48.35 -135.85 REMARK 500 24 THR A 56 42.47 -106.19 REMARK 500 24 ALA A 70 -40.65 -131.42 REMARK 500 24 VAL A 92 -50.91 -131.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 85 0.31 SIDE_CHAIN REMARK 500 1 ARG A 89 0.32 SIDE_CHAIN REMARK 500 1 ARG A 91 0.30 SIDE_CHAIN REMARK 500 2 ARG A 85 0.26 SIDE_CHAIN REMARK 500 2 ARG A 89 0.31 SIDE_CHAIN REMARK 500 2 ARG A 91 0.31 SIDE_CHAIN REMARK 500 3 ARG A 85 0.30 SIDE_CHAIN REMARK 500 3 ARG A 89 0.30 SIDE_CHAIN REMARK 500 3 ARG A 91 0.31 SIDE_CHAIN REMARK 500 4 ARG A 85 0.26 SIDE_CHAIN REMARK 500 4 ARG A 89 0.32 SIDE_CHAIN REMARK 500 4 ARG A 91 0.31 SIDE_CHAIN REMARK 500 5 ARG A 85 0.32 SIDE_CHAIN REMARK 500 5 ARG A 89 0.30 SIDE_CHAIN REMARK 500 5 ARG A 91 0.32 SIDE_CHAIN REMARK 500 6 ARG A 85 0.32 SIDE_CHAIN REMARK 500 6 ARG A 89 0.31 SIDE_CHAIN REMARK 500 6 ARG A 91 0.31 SIDE_CHAIN REMARK 500 7 ARG A 85 0.31 SIDE_CHAIN REMARK 500 7 ARG A 89 0.27 SIDE_CHAIN REMARK 500 7 ARG A 91 0.31 SIDE_CHAIN REMARK 500 8 ARG A 85 0.27 SIDE_CHAIN REMARK 500 8 ARG A 89 0.31 SIDE_CHAIN REMARK 500 8 ARG A 91 0.28 SIDE_CHAIN REMARK 500 9 ARG A 85 0.31 SIDE_CHAIN REMARK 500 9 ARG A 89 0.32 SIDE_CHAIN REMARK 500 9 ARG A 91 0.23 SIDE_CHAIN REMARK 500 10 ARG A 85 0.31 SIDE_CHAIN REMARK 500 10 ARG A 89 0.22 SIDE_CHAIN REMARK 500 10 ARG A 91 0.29 SIDE_CHAIN REMARK 500 11 ARG A 85 0.30 SIDE_CHAIN REMARK 500 11 ARG A 89 0.32 SIDE_CHAIN REMARK 500 11 ARG A 91 0.21 SIDE_CHAIN REMARK 500 12 ARG A 85 0.31 SIDE_CHAIN REMARK 500 12 ARG A 89 0.32 SIDE_CHAIN REMARK 500 12 ARG A 91 0.32 SIDE_CHAIN REMARK 500 13 ARG A 85 0.32 SIDE_CHAIN REMARK 500 13 ARG A 89 0.32 SIDE_CHAIN REMARK 500 13 ARG A 91 0.32 SIDE_CHAIN REMARK 500 14 ARG A 85 0.31 SIDE_CHAIN REMARK 500 14 ARG A 89 0.32 SIDE_CHAIN REMARK 500 14 ARG A 91 0.28 SIDE_CHAIN REMARK 500 15 ARG A 85 0.28 SIDE_CHAIN REMARK 500 15 ARG A 89 0.32 SIDE_CHAIN REMARK 500 15 ARG A 91 0.32 SIDE_CHAIN REMARK 500 16 ARG A 85 0.27 SIDE_CHAIN REMARK 500 16 ARG A 89 0.31 SIDE_CHAIN REMARK 500 16 ARG A 91 0.31 SIDE_CHAIN REMARK 500 17 ARG A 85 0.32 SIDE_CHAIN REMARK 500 17 ARG A 89 0.32 SIDE_CHAIN REMARK 500 17 ARG A 91 0.29 SIDE_CHAIN REMARK 500 18 ARG A 85 0.30 SIDE_CHAIN REMARK 500 18 ARG A 89 0.32 SIDE_CHAIN REMARK 500 18 ARG A 91 0.28 SIDE_CHAIN REMARK 500 19 ARG A 85 0.32 SIDE_CHAIN REMARK 500 19 ARG A 89 0.32 SIDE_CHAIN REMARK 500 19 ARG A 91 0.32 SIDE_CHAIN REMARK 500 20 ARG A 85 0.32 SIDE_CHAIN REMARK 500 20 ARG A 89 0.31 SIDE_CHAIN REMARK 500 20 ARG A 91 0.28 SIDE_CHAIN REMARK 500 21 ARG A 85 0.29 SIDE_CHAIN REMARK 500 21 ARG A 89 0.32 SIDE_CHAIN REMARK 500 21 ARG A 91 0.31 SIDE_CHAIN REMARK 500 22 ARG A 85 0.32 SIDE_CHAIN REMARK 500 22 ARG A 89 0.32 SIDE_CHAIN REMARK 500 22 ARG A 91 0.31 SIDE_CHAIN REMARK 500 23 ARG A 85 0.31 SIDE_CHAIN REMARK 500 23 ARG A 89 0.28 SIDE_CHAIN REMARK 500 23 ARG A 91 0.32 SIDE_CHAIN REMARK 500 24 ARG A 85 0.32 SIDE_CHAIN REMARK 500 24 ARG A 89 0.31 SIDE_CHAIN REMARK 500 24 ARG A 91 0.31 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: WR41 RELATED DB: TARGETDB DBREF 1L7Y A 1 94 UNP P34661 U185_CAEEL 1 94 SEQRES 1 A 94 MET SER GLY GLY THR ALA ALA THR THR ALA GLY SER LYS SEQRES 2 A 94 VAL THR PHE LYS ILE THR LEU THR SER ASP PRO LYS LEU SEQRES 3 A 94 PRO PHE LYS VAL LEU SER VAL PRO GLU SER THR PRO PHE SEQRES 4 A 94 THR ALA VAL LEU LYS PHE ALA ALA GLU GLU PHE LYS VAL SEQRES 5 A 94 PRO ALA ALA THR SER ALA ILE ILE THR ASN ASP GLY VAL SEQRES 6 A 94 GLY VAL ASN PRO ALA GLN PRO ALA GLY ASN ILE PHE LEU SEQRES 7 A 94 LYS HIS GLY SER GLU LEU ARG LEU ILE PRO ARG ASP ARG SEQRES 8 A 94 VAL GLY HIS HELIX 1 1 PRO A 38 LYS A 51 1 14 HELIX 2 2 PRO A 72 HIS A 80 1 9 SHEET 1 A 5 LYS A 29 PRO A 34 0 SHEET 2 A 5 LYS A 13 LEU A 20 -1 N VAL A 14 O VAL A 33 SHEET 3 A 5 GLU A 83 PRO A 88 1 O LEU A 86 N THR A 19 SHEET 4 A 5 SER A 57 ILE A 60 -1 N ALA A 58 O ILE A 87 SHEET 5 A 5 GLY A 66 VAL A 67 -1 O VAL A 67 N ILE A 59 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 295 0 0 2 5 0 0 6 0 0 0 8 END