HEADER TRANSCRIPTION/DNA 27-FEB-02 1L3L TITLE CRYSTAL STRUCTURE OF A BACTERIAL QUORUM-SENSING TRANSCRIPTION FACTOR TITLE 2 COMPLEXED WITH PHEROMONE AND DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP*CP*TP*GP*CP*AP*CP*AP COMPND 3 *TP*C)-3'; COMPND 4 CHAIN: E, F, G, H; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TRANSCRIPTIONAL ACTIVATOR PROTEIN TRAR; COMPND 8 CHAIN: A, B, C, D; COMPND 9 SYNONYM: QUORUM-SENSING TRANSCRIPTION FACTOR; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS; SOURCE 5 ORGANISM_TAXID: 358; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PJZ358 KEYWDS HELIX-TURN-HELIX DNA BINDING MOTIF, ALPHA/BETA/ALPHA SANDWICH, KEYWDS 2 ASYMMETRY OF THE PROTEIN-DNA COMPLEX, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,T.PAPPAS,J.L.BRACE,P.C.MILLER,T.OULMASSOV,J.M.MOLYNEAUX, AUTHOR 2 J.C.ANDERSON,J.K.BASHKIN,S.C.WINANS,A.JOACHIMIAK REVDAT 4 11-OCT-17 1L3L 1 REMARK REVDAT 3 24-FEB-09 1L3L 1 VERSN REVDAT 2 01-APR-03 1L3L 1 JRNL REVDAT 1 03-JUL-02 1L3L 0 JRNL AUTH R.G.ZHANG,T.PAPPAS,J.L.BRACE,P.C.MILLER,T.OULMASSOV, JRNL AUTH 2 J.M.MOLYNEAUX,J.C.ANDERSON,J.K.BASHKIN,S.C.WINANS, JRNL AUTH 3 A.JOACHIMIAK JRNL TITL STRUCTURE OF A BACTERIAL QUORUM-SENSING TRANSCRIPTION FACTOR JRNL TITL 2 COMPLEXED WITH PHEROMONE AND DNA. JRNL REF NATURE V. 417 971 2002 JRNL REFN ISSN 0028-0836 JRNL PMID 12087407 JRNL DOI 10.1038/NATURE00833 REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 845189.580 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.1 REMARK 3 NUMBER OF REFLECTIONS : 139194 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 7044 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.66 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 17485 REMARK 3 BIN R VALUE (WORKING SET) : 0.3360 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 907 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.011 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7332 REMARK 3 NUCLEIC ACID ATOMS : 1628 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 914 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.81000 REMARK 3 B22 (A**2) : -2.00000 REMARK 3 B33 (A**2) : 3.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.12000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM SIGMAA (A) : 0.24 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.24 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.840 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.280 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.530 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.220 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 38.77 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 4 : PHERMONE_SNEW.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : PHERMONE_SNEW.TOP REMARK 3 TOPOLOGY FILE 3 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 4 : WATER.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1L3L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAR-02. REMARK 100 THE DEPOSITION ID IS D_1000015611. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-AUG-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795, 0.9797, 0.95600 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-2 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 139194 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.1 REMARK 200 DATA REDUNDANCY : 6.690 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.29 REMARK 200 R MERGE FOR SHELL (I) : 0.42200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.18500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DEPOSITED COORDS. ARE TWO PROTEIN-DNA-PHEROMONE REMARK 300 COMPLEXES IN ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, G, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, H, A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 MSE B 1 REMARK 465 ARG C 163 REMARK 465 THR C 164 REMARK 465 THR C 165 REMARK 465 PRO C 166 REMARK 465 THR C 167 REMARK 465 ALA C 168 REMARK 465 GLU C 169 REMARK 465 ASP C 170 REMARK 465 ALA C 171 REMARK 465 ARG D 163 REMARK 465 THR D 164 REMARK 465 THR D 165 REMARK 465 PRO D 166 REMARK 465 THR D 167 REMARK 465 ALA D 168 REMARK 465 GLU D 169 REMARK 465 ASP D 170 REMARK 465 ALA D 171 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 55 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 91 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 96 CG CD CE NZ REMARK 470 ASP A 133 CG OD1 OD2 REMARK 470 ASP A 138 CG OD1 OD2 REMARK 470 ARG A 141 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 142 CG CD OE1 OE2 REMARK 470 ILE B 14 CG1 CG2 CD1 REMARK 470 ARG B 55 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 91 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 96 CG CD CE NZ REMARK 470 ASP B 133 CG OD1 OD2 REMARK 470 LYS B 134 CG CD CE NZ REMARK 470 ASP B 138 CG OD1 OD2 REMARK 470 LEU B 139 CG CD1 CD2 REMARK 470 GLU B 142 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS A 44 O HOH A 1026 2.12 REMARK 500 O HIS B 44 O HOH B 1023 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 3 98.52 66.19 REMARK 500 HIS A 44 79.36 46.29 REMARK 500 ARG A 45 -21.82 70.58 REMARK 500 ARG A 91 -56.93 -28.40 REMARK 500 ASP A 138 75.55 -109.40 REMARK 500 HIS B 3 99.72 71.38 REMARK 500 HIS B 44 76.67 43.22 REMARK 500 ARG B 45 -22.79 73.69 REMARK 500 ARG B 91 -60.41 -26.07 REMARK 500 GLN C 43 -82.85 -81.94 REMARK 500 HIS C 44 -83.23 -115.89 REMARK 500 ARG C 91 -71.85 -43.86 REMARK 500 PRO C 92 -38.36 -28.11 REMARK 500 ASP C 144 109.39 -55.16 REMARK 500 HIS D 44 -96.69 -145.75 REMARK 500 SER D 95 159.77 -49.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LAE B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LAE D 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LAE A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LAE C 1004 DBREF 1L3L A 1 234 UNP P33905 TRAR_9RHIZ 1 234 DBREF 1L3L B 1 234 UNP P33905 TRAR_9RHIZ 1 234 DBREF 1L3L C 1 234 UNP P33905 TRAR_9RHIZ 1 234 DBREF 1L3L D 1 234 UNP P33905 TRAR_9RHIZ 1 234 DBREF 1L3L E 1 20 PDB 1L3L 1L3L 1 20 DBREF 1L3L F 101 120 PDB 1L3L 1L3L 101 120 DBREF 1L3L G 1 20 PDB 1L3L 1L3L 1 20 DBREF 1L3L H 101 120 PDB 1L3L 1L3L 101 120 SEQADV 1L3L MSE A 1 UNP P33905 MET 1 MODIFIED RESIDUE SEQADV 1L3L MSE A 125 UNP P33905 MET 125 MODIFIED RESIDUE SEQADV 1L3L MSE A 127 UNP P33905 MET 127 MODIFIED RESIDUE SEQADV 1L3L MSE A 130 UNP P33905 MET 130 MODIFIED RESIDUE SEQADV 1L3L MSE A 191 UNP P33905 MET 191 MODIFIED RESIDUE SEQADV 1L3L MSE A 213 UNP P33905 MET 213 MODIFIED RESIDUE SEQADV 1L3L MSE B 1 UNP P33905 MET 1 MODIFIED RESIDUE SEQADV 1L3L MSE B 125 UNP P33905 MET 125 MODIFIED RESIDUE SEQADV 1L3L MSE B 127 UNP P33905 MET 127 MODIFIED RESIDUE SEQADV 1L3L MSE B 130 UNP P33905 MET 130 MODIFIED RESIDUE SEQADV 1L3L MSE B 191 UNP P33905 MET 191 MODIFIED RESIDUE SEQADV 1L3L MSE B 213 UNP P33905 MET 213 MODIFIED RESIDUE SEQADV 1L3L MSE C 1 UNP P33905 MET 1 MODIFIED RESIDUE SEQADV 1L3L MSE C 125 UNP P33905 MET 125 MODIFIED RESIDUE SEQADV 1L3L MSE C 127 UNP P33905 MET 127 MODIFIED RESIDUE SEQADV 1L3L MSE C 130 UNP P33905 MET 130 MODIFIED RESIDUE SEQADV 1L3L MSE C 191 UNP P33905 MET 191 MODIFIED RESIDUE SEQADV 1L3L MSE C 213 UNP P33905 MET 213 MODIFIED RESIDUE SEQADV 1L3L MSE D 1 UNP P33905 MET 1 MODIFIED RESIDUE SEQADV 1L3L MSE D 125 UNP P33905 MET 125 MODIFIED RESIDUE SEQADV 1L3L MSE D 127 UNP P33905 MET 127 MODIFIED RESIDUE SEQADV 1L3L MSE D 130 UNP P33905 MET 130 MODIFIED RESIDUE SEQADV 1L3L MSE D 191 UNP P33905 MET 191 MODIFIED RESIDUE SEQADV 1L3L MSE D 213 UNP P33905 MET 213 MODIFIED RESIDUE SEQRES 1 E 20 DG DA DT DG DT DG DC DA DG DA DT DC DT SEQRES 2 E 20 DG DC DA DC DA DT DC SEQRES 1 F 20 DG DA DT DG DT DG DC DA DG DA DT DC DT SEQRES 2 F 20 DG DC DA DC DA DT DC SEQRES 1 G 20 DG DA DT DG DT DG DC DA DG DA DT DC DT SEQRES 2 G 20 DG DC DA DC DA DT DC SEQRES 1 H 20 DG DA DT DG DT DG DC DA DG DA DT DC DT SEQRES 2 H 20 DG DC DA DC DA DT DC SEQRES 1 A 234 MSE GLN HIS TRP LEU ASP LYS LEU THR ASP LEU ALA ALA SEQRES 2 A 234 ILE GLU GLY ASP GLU CYS ILE LEU LYS THR GLY LEU ALA SEQRES 3 A 234 ASP ILE ALA ASP HIS PHE GLY PHE THR GLY TYR ALA TYR SEQRES 4 A 234 LEU HIS ILE GLN HIS ARG HIS ILE THR ALA VAL THR ASN SEQRES 5 A 234 TYR HIS ARG GLN TRP GLN SER THR TYR PHE ASP LYS LYS SEQRES 6 A 234 PHE GLU ALA LEU ASP PRO VAL VAL LYS ARG ALA ARG SER SEQRES 7 A 234 ARG LYS HIS ILE PHE THR TRP SER GLY GLU HIS GLU ARG SEQRES 8 A 234 PRO THR LEU SER LYS ASP GLU ARG ALA PHE TYR ASP HIS SEQRES 9 A 234 ALA SER ASP PHE GLY ILE ARG SER GLY ILE THR ILE PRO SEQRES 10 A 234 ILE LYS THR ALA ASN GLY PHE MSE SER MSE PHE THR MSE SEQRES 11 A 234 ALA SER ASP LYS PRO VAL ILE ASP LEU ASP ARG GLU ILE SEQRES 12 A 234 ASP ALA VAL ALA ALA ALA ALA THR ILE GLY GLN ILE HIS SEQRES 13 A 234 ALA ARG ILE SER PHE LEU ARG THR THR PRO THR ALA GLU SEQRES 14 A 234 ASP ALA ALA TRP LEU ASP PRO LYS GLU ALA THR TYR LEU SEQRES 15 A 234 ARG TRP ILE ALA VAL GLY LYS THR MSE GLU GLU ILE ALA SEQRES 16 A 234 ASP VAL GLU GLY VAL LYS TYR ASN SER VAL ARG VAL LYS SEQRES 17 A 234 LEU ARG GLU ALA MSE LYS ARG PHE ASP VAL ARG SER LYS SEQRES 18 A 234 ALA HIS LEU THR ALA LEU ALA ILE ARG ARG LYS LEU ILE SEQRES 1 B 234 MSE GLN HIS TRP LEU ASP LYS LEU THR ASP LEU ALA ALA SEQRES 2 B 234 ILE GLU GLY ASP GLU CYS ILE LEU LYS THR GLY LEU ALA SEQRES 3 B 234 ASP ILE ALA ASP HIS PHE GLY PHE THR GLY TYR ALA TYR SEQRES 4 B 234 LEU HIS ILE GLN HIS ARG HIS ILE THR ALA VAL THR ASN SEQRES 5 B 234 TYR HIS ARG GLN TRP GLN SER THR TYR PHE ASP LYS LYS SEQRES 6 B 234 PHE GLU ALA LEU ASP PRO VAL VAL LYS ARG ALA ARG SER SEQRES 7 B 234 ARG LYS HIS ILE PHE THR TRP SER GLY GLU HIS GLU ARG SEQRES 8 B 234 PRO THR LEU SER LYS ASP GLU ARG ALA PHE TYR ASP HIS SEQRES 9 B 234 ALA SER ASP PHE GLY ILE ARG SER GLY ILE THR ILE PRO SEQRES 10 B 234 ILE LYS THR ALA ASN GLY PHE MSE SER MSE PHE THR MSE SEQRES 11 B 234 ALA SER ASP LYS PRO VAL ILE ASP LEU ASP ARG GLU ILE SEQRES 12 B 234 ASP ALA VAL ALA ALA ALA ALA THR ILE GLY GLN ILE HIS SEQRES 13 B 234 ALA ARG ILE SER PHE LEU ARG THR THR PRO THR ALA GLU SEQRES 14 B 234 ASP ALA ALA TRP LEU ASP PRO LYS GLU ALA THR TYR LEU SEQRES 15 B 234 ARG TRP ILE ALA VAL GLY LYS THR MSE GLU GLU ILE ALA SEQRES 16 B 234 ASP VAL GLU GLY VAL LYS TYR ASN SER VAL ARG VAL LYS SEQRES 17 B 234 LEU ARG GLU ALA MSE LYS ARG PHE ASP VAL ARG SER LYS SEQRES 18 B 234 ALA HIS LEU THR ALA LEU ALA ILE ARG ARG LYS LEU ILE SEQRES 1 C 234 MSE GLN HIS TRP LEU ASP LYS LEU THR ASP LEU ALA ALA SEQRES 2 C 234 ILE GLU GLY ASP GLU CYS ILE LEU LYS THR GLY LEU ALA SEQRES 3 C 234 ASP ILE ALA ASP HIS PHE GLY PHE THR GLY TYR ALA TYR SEQRES 4 C 234 LEU HIS ILE GLN HIS ARG HIS ILE THR ALA VAL THR ASN SEQRES 5 C 234 TYR HIS ARG GLN TRP GLN SER THR TYR PHE ASP LYS LYS SEQRES 6 C 234 PHE GLU ALA LEU ASP PRO VAL VAL LYS ARG ALA ARG SER SEQRES 7 C 234 ARG LYS HIS ILE PHE THR TRP SER GLY GLU HIS GLU ARG SEQRES 8 C 234 PRO THR LEU SER LYS ASP GLU ARG ALA PHE TYR ASP HIS SEQRES 9 C 234 ALA SER ASP PHE GLY ILE ARG SER GLY ILE THR ILE PRO SEQRES 10 C 234 ILE LYS THR ALA ASN GLY PHE MSE SER MSE PHE THR MSE SEQRES 11 C 234 ALA SER ASP LYS PRO VAL ILE ASP LEU ASP ARG GLU ILE SEQRES 12 C 234 ASP ALA VAL ALA ALA ALA ALA THR ILE GLY GLN ILE HIS SEQRES 13 C 234 ALA ARG ILE SER PHE LEU ARG THR THR PRO THR ALA GLU SEQRES 14 C 234 ASP ALA ALA TRP LEU ASP PRO LYS GLU ALA THR TYR LEU SEQRES 15 C 234 ARG TRP ILE ALA VAL GLY LYS THR MSE GLU GLU ILE ALA SEQRES 16 C 234 ASP VAL GLU GLY VAL LYS TYR ASN SER VAL ARG VAL LYS SEQRES 17 C 234 LEU ARG GLU ALA MSE LYS ARG PHE ASP VAL ARG SER LYS SEQRES 18 C 234 ALA HIS LEU THR ALA LEU ALA ILE ARG ARG LYS LEU ILE SEQRES 1 D 234 MSE GLN HIS TRP LEU ASP LYS LEU THR ASP LEU ALA ALA SEQRES 2 D 234 ILE GLU GLY ASP GLU CYS ILE LEU LYS THR GLY LEU ALA SEQRES 3 D 234 ASP ILE ALA ASP HIS PHE GLY PHE THR GLY TYR ALA TYR SEQRES 4 D 234 LEU HIS ILE GLN HIS ARG HIS ILE THR ALA VAL THR ASN SEQRES 5 D 234 TYR HIS ARG GLN TRP GLN SER THR TYR PHE ASP LYS LYS SEQRES 6 D 234 PHE GLU ALA LEU ASP PRO VAL VAL LYS ARG ALA ARG SER SEQRES 7 D 234 ARG LYS HIS ILE PHE THR TRP SER GLY GLU HIS GLU ARG SEQRES 8 D 234 PRO THR LEU SER LYS ASP GLU ARG ALA PHE TYR ASP HIS SEQRES 9 D 234 ALA SER ASP PHE GLY ILE ARG SER GLY ILE THR ILE PRO SEQRES 10 D 234 ILE LYS THR ALA ASN GLY PHE MSE SER MSE PHE THR MSE SEQRES 11 D 234 ALA SER ASP LYS PRO VAL ILE ASP LEU ASP ARG GLU ILE SEQRES 12 D 234 ASP ALA VAL ALA ALA ALA ALA THR ILE GLY GLN ILE HIS SEQRES 13 D 234 ALA ARG ILE SER PHE LEU ARG THR THR PRO THR ALA GLU SEQRES 14 D 234 ASP ALA ALA TRP LEU ASP PRO LYS GLU ALA THR TYR LEU SEQRES 15 D 234 ARG TRP ILE ALA VAL GLY LYS THR MSE GLU GLU ILE ALA SEQRES 16 D 234 ASP VAL GLU GLY VAL LYS TYR ASN SER VAL ARG VAL LYS SEQRES 17 D 234 LEU ARG GLU ALA MSE LYS ARG PHE ASP VAL ARG SER LYS SEQRES 18 D 234 ALA HIS LEU THR ALA LEU ALA ILE ARG ARG LYS LEU ILE MODRES 1L3L MSE A 125 MET SELENOMETHIONINE MODRES 1L3L MSE A 127 MET SELENOMETHIONINE MODRES 1L3L MSE A 130 MET SELENOMETHIONINE MODRES 1L3L MSE A 191 MET SELENOMETHIONINE MODRES 1L3L MSE A 213 MET SELENOMETHIONINE MODRES 1L3L MSE B 125 MET SELENOMETHIONINE MODRES 1L3L MSE B 127 MET SELENOMETHIONINE MODRES 1L3L MSE B 130 MET SELENOMETHIONINE MODRES 1L3L MSE B 191 MET SELENOMETHIONINE MODRES 1L3L MSE B 213 MET SELENOMETHIONINE MODRES 1L3L MSE C 1 MET SELENOMETHIONINE MODRES 1L3L MSE C 125 MET SELENOMETHIONINE MODRES 1L3L MSE C 127 MET SELENOMETHIONINE MODRES 1L3L MSE C 130 MET SELENOMETHIONINE MODRES 1L3L MSE C 191 MET SELENOMETHIONINE MODRES 1L3L MSE C 213 MET SELENOMETHIONINE MODRES 1L3L MSE D 1 MET SELENOMETHIONINE MODRES 1L3L MSE D 125 MET SELENOMETHIONINE MODRES 1L3L MSE D 127 MET SELENOMETHIONINE MODRES 1L3L MSE D 130 MET SELENOMETHIONINE MODRES 1L3L MSE D 191 MET SELENOMETHIONINE MODRES 1L3L MSE D 213 MET SELENOMETHIONINE HET MSE A 125 8 HET MSE A 127 8 HET MSE A 130 8 HET MSE A 191 8 HET MSE A 213 8 HET MSE B 125 8 HET MSE B 127 8 HET MSE B 130 8 HET MSE B 191 8 HET MSE B 213 8 HET MSE C 1 8 HET MSE C 125 8 HET MSE C 127 8 HET MSE C 130 8 HET MSE C 191 8 HET MSE C 213 8 HET MSE D 1 8 HET MSE D 125 8 HET MSE D 127 8 HET MSE D 130 8 HET MSE D 191 8 HET MSE D 213 8 HET LAE A1003 17 HET LAE B1001 17 HET LAE C1004 17 HET LAE D1002 17 HETNAM MSE SELENOMETHIONINE HETNAM LAE 3-OXO-OCTANOIC ACID (2-OXO-TETRAHYDRO-FURAN-3-YL)-AMIDE HETSYN LAE N-(3-OXO-OCTANAL-1-YL)-HOMOSERINE LACTONE FORMUL 5 MSE 22(C5 H11 N O2 SE) FORMUL 9 LAE 4(C12 H19 N O4) FORMUL 13 HOH *914(H2 O) HELIX 1 1 HIS A 3 ALA A 12 1 10 HELIX 2 2 ASP A 17 PHE A 32 1 16 HELIX 3 3 HIS A 54 LYS A 64 1 11 HELIX 4 4 LYS A 65 LEU A 69 5 5 HELIX 5 5 ASP A 70 ARG A 79 1 10 HELIX 6 6 GLY A 87 ARG A 91 1 5 HELIX 7 7 SER A 95 ASP A 107 1 13 HELIX 8 8 ALA A 121 GLY A 123 5 3 HELIX 9 9 ASP A 144 LEU A 162 1 19 HELIX 10 10 ASP A 175 ALA A 186 1 12 HELIX 11 11 THR A 190 GLY A 199 1 10 HELIX 12 12 LYS A 201 ASP A 217 1 17 HELIX 13 13 SER A 220 ARG A 231 1 12 HELIX 14 14 HIS B 3 ALA B 12 1 10 HELIX 15 15 ASP B 17 PHE B 32 1 16 HELIX 16 16 HIS B 54 LYS B 64 1 11 HELIX 17 17 LYS B 65 LEU B 69 5 5 HELIX 18 18 ASP B 70 ARG B 79 1 10 HELIX 19 19 GLY B 87 ARG B 91 1 5 HELIX 20 20 SER B 95 ASP B 107 1 13 HELIX 21 21 ALA B 121 GLY B 123 5 3 HELIX 22 22 ASP B 144 LEU B 162 1 19 HELIX 23 23 ASP B 175 ALA B 186 1 12 HELIX 24 24 THR B 190 GLU B 198 1 9 HELIX 25 25 LYS B 201 ASP B 217 1 17 HELIX 26 26 SER B 220 ARG B 231 1 12 HELIX 27 27 HIS C 3 ALA C 12 1 10 HELIX 28 28 ASP C 17 PHE C 32 1 16 HELIX 29 29 HIS C 54 LYS C 64 1 11 HELIX 30 30 LYS C 65 LEU C 69 5 5 HELIX 31 31 ASP C 70 ARG C 79 1 10 HELIX 32 32 GLY C 87 ARG C 91 1 5 HELIX 33 33 PRO C 92 LEU C 94 5 3 HELIX 34 34 SER C 95 ASP C 107 1 13 HELIX 35 35 ALA C 121 GLY C 123 5 3 HELIX 36 36 ASP C 144 PHE C 161 1 18 HELIX 37 37 ASP C 175 VAL C 187 1 13 HELIX 38 38 THR C 190 GLY C 199 1 10 HELIX 39 39 LYS C 201 PHE C 216 1 16 HELIX 40 40 SER C 220 ARG C 231 1 12 HELIX 41 41 HIS D 3 ALA D 12 1 10 HELIX 42 42 ASP D 17 PHE D 32 1 16 HELIX 43 43 HIS D 54 LYS D 64 1 11 HELIX 44 44 LYS D 65 LEU D 69 5 5 HELIX 45 45 ASP D 70 ARG D 79 1 10 HELIX 46 46 GLY D 87 ARG D 91 1 5 HELIX 47 47 SER D 95 ASP D 107 1 13 HELIX 48 48 ALA D 121 GLY D 123 5 3 HELIX 49 49 ASP D 144 PHE D 161 1 18 HELIX 50 50 ASP D 175 ALA D 186 1 12 HELIX 51 51 THR D 190 GLY D 199 1 10 HELIX 52 52 LYS D 201 PHE D 216 1 16 HELIX 53 53 SER D 220 ARG D 231 1 12 SHEET 1 A 6 PHE A 83 SER A 86 0 SHEET 2 A 6 SER A 112 LYS A 119 -1 O THR A 115 N PHE A 83 SHEET 3 A 6 MSE A 125 SER A 132 -1 O SER A 132 N SER A 112 SHEET 4 A 6 GLY A 36 GLN A 43 -1 N GLY A 36 O ALA A 131 SHEET 5 A 6 HIS A 46 THR A 51 -1 O HIS A 46 N GLN A 43 SHEET 6 A 6 ALA A 168 GLU A 169 -1 O ALA A 168 N ALA A 49 SHEET 1 B 6 PHE B 83 SER B 86 0 SHEET 2 B 6 SER B 112 LYS B 119 -1 O THR B 115 N PHE B 83 SHEET 3 B 6 MSE B 125 SER B 132 -1 O SER B 132 N SER B 112 SHEET 4 B 6 GLY B 36 GLN B 43 -1 N LEU B 40 O MSE B 127 SHEET 5 B 6 HIS B 46 THR B 51 -1 O THR B 48 N HIS B 41 SHEET 6 B 6 ALA B 168 GLU B 169 -1 O ALA B 168 N ALA B 49 SHEET 1 C 5 ILE C 47 THR C 51 0 SHEET 2 C 5 GLY C 36 ILE C 42 -1 N HIS C 41 O THR C 48 SHEET 3 C 5 PHE C 124 SER C 132 -1 O ALA C 131 N GLY C 36 SHEET 4 C 5 SER C 112 THR C 120 -1 N SER C 112 O SER C 132 SHEET 5 C 5 PHE C 83 SER C 86 -1 N PHE C 83 O THR C 115 SHEET 1 D 5 ILE D 47 THR D 51 0 SHEET 2 D 5 GLY D 36 ILE D 42 -1 N TYR D 39 O VAL D 50 SHEET 3 D 5 PHE D 124 SER D 132 -1 O MSE D 125 N ILE D 42 SHEET 4 D 5 SER D 112 THR D 120 -1 N SER D 112 O SER D 132 SHEET 5 D 5 PHE D 83 SER D 86 -1 N PHE D 83 O THR D 115 LINK C PHE A 124 N MSE A 125 1555 1555 1.33 LINK C MSE A 125 N SER A 126 1555 1555 1.32 LINK C SER A 126 N MSE A 127 1555 1555 1.32 LINK C MSE A 127 N PHE A 128 1555 1555 1.33 LINK C THR A 129 N MSE A 130 1555 1555 1.33 LINK C MSE A 130 N ALA A 131 1555 1555 1.33 LINK C THR A 190 N MSE A 191 1555 1555 1.32 LINK C MSE A 191 N GLU A 192 1555 1555 1.33 LINK C ALA A 212 N MSE A 213 1555 1555 1.33 LINK C MSE A 213 N LYS A 214 1555 1555 1.33 LINK C PHE B 124 N MSE B 125 1555 1555 1.33 LINK C MSE B 125 N SER B 126 1555 1555 1.33 LINK C SER B 126 N MSE B 127 1555 1555 1.32 LINK C MSE B 127 N PHE B 128 1555 1555 1.33 LINK C THR B 129 N MSE B 130 1555 1555 1.33 LINK C MSE B 130 N ALA B 131 1555 1555 1.33 LINK C THR B 190 N MSE B 191 1555 1555 1.32 LINK C MSE B 191 N GLU B 192 1555 1555 1.33 LINK C ALA B 212 N MSE B 213 1555 1555 1.33 LINK C MSE B 213 N LYS B 214 1555 1555 1.33 LINK C MSE C 1 N GLN C 2 1555 1555 1.33 LINK C PHE C 124 N MSE C 125 1555 1555 1.33 LINK C MSE C 125 N SER C 126 1555 1555 1.33 LINK C SER C 126 N MSE C 127 1555 1555 1.33 LINK C MSE C 127 N PHE C 128 1555 1555 1.33 LINK C THR C 129 N MSE C 130 1555 1555 1.33 LINK C MSE C 130 N ALA C 131 1555 1555 1.33 LINK C THR C 190 N MSE C 191 1555 1555 1.33 LINK C MSE C 191 N GLU C 192 1555 1555 1.33 LINK C ALA C 212 N MSE C 213 1555 1555 1.33 LINK C MSE C 213 N LYS C 214 1555 1555 1.33 LINK C MSE D 1 N GLN D 2 1555 1555 1.33 LINK C PHE D 124 N MSE D 125 1555 1555 1.33 LINK C MSE D 125 N SER D 126 1555 1555 1.33 LINK C SER D 126 N MSE D 127 1555 1555 1.33 LINK C MSE D 127 N PHE D 128 1555 1555 1.33 LINK C THR D 129 N MSE D 130 1555 1555 1.33 LINK C MSE D 130 N ALA D 131 1555 1555 1.33 LINK C THR D 190 N MSE D 191 1555 1555 1.33 LINK C MSE D 191 N GLU D 192 1555 1555 1.33 LINK C ALA D 212 N MSE D 213 1555 1555 1.33 LINK C MSE D 213 N LYS D 214 1555 1555 1.33 SITE 1 AC1 13 ALA B 38 LEU B 40 TYR B 53 TRP B 57 SITE 2 AC1 13 TYR B 61 PHE B 62 ASP B 70 TRP B 85 SITE 3 AC1 13 PHE B 101 ALA B 105 MSE B 127 THR B 129 SITE 4 AC1 13 HOH B1027 SITE 1 AC2 16 ALA D 38 LEU D 40 TYR D 53 TRP D 57 SITE 2 AC2 16 TYR D 61 PHE D 62 ASP D 70 VAL D 72 SITE 3 AC2 16 TRP D 85 PHE D 101 TYR D 102 ALA D 105 SITE 4 AC2 16 ILE D 110 MSE D 127 THR D 129 HOH D1024 SITE 1 AC3 15 ALA A 38 LEU A 40 TYR A 53 TRP A 57 SITE 2 AC3 15 TYR A 61 PHE A 62 ASP A 70 VAL A 72 SITE 3 AC3 15 TRP A 85 PHE A 101 TYR A 102 ALA A 105 SITE 4 AC3 15 MSE A 127 THR A 129 HOH A1049 SITE 1 AC4 14 ALA C 38 LEU C 40 TYR C 53 TRP C 57 SITE 2 AC4 14 TYR C 61 PHE C 62 ASP C 70 TRP C 85 SITE 3 AC4 14 PHE C 101 TYR C 102 ALA C 105 MSE C 127 SITE 4 AC4 14 THR C 129 HOH C1060 CRYST1 92.298 58.370 127.453 90.00 102.81 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010834 0.000000 0.002463 0.00000 SCALE2 0.000000 0.017132 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008046 0.00000 MASTER 327 0 26 53 22 0 16 6 0 0 0 80 END